LOCUS Silicibacter 4198931 bp dna linear UNK DEFINITION ACCESSION Silicibacter SOURCE unknown ORGANISM . FEATURES Location/Qualifiers source 1..4198931 /organism="unknown" CDS complement(20494..20718) /locus_tag="Silicibacter_67" /translation="MLHKHGLEKGITISYQSISHEVQKNIKRDNIKLSVAEGLQRSLN EAGVPVYTELIHEAYRYRRPRGGARYQLSS" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(56206..58650) /locus_tag="Silicibacter_68" /function="COG: Superfamily I DNA and RNA helicases" /translation="MSTFDEMDAFEGASLSARAMAARPMPYLDGLNPAQRDAVETLDG PVLMLAGAGTGKTKALTTRIVHLLNTNKARTNEILAVTFTNKAAREMKDRVGRMLGQP AEGMPWLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQLIQAAGIDDKRWP ARMLANIIDDWKNRALTPAKVPAGDAAAYNHRGTEFYDQYQTRLKELNAVDFGDLLLH CVEIFQNNPDLLAQYHRWFRYILVDEYQDTNVAQYLWLRLLASGHKNICCVGDDDQSI YGWRGAEVGNILRFEKDFSGAKVIRLEQNYRSTKHILSAASGVIRGNEGRLGKELWTE AEGGEKVRLIGHWDGEEEARWIGEEIEAMQRGTRGMRQYGLNEMAILVRASHQMRAFE DRFLTIGLPYRVIGGPRFYERLEIRDAMAYFRVVISPEDDLAFERIVNTPKRGLGDKA QQTIQTVARANGVSLLEGARLAVEDGLIKGKGGAALRRLVENIARWGQMTRTVLADPD DPDAVVEGVQSFEAFQARTEVSHVELAEIILDESGYTSMWQADKNPDSPGRLENLKEL VKALENFDNLQGFLEHVSLVMDNDKQDAEQKVSIMTLHAAKGLEFPAVFLPGWEDGLF PSQRSMDESGLKGLEEERRLAYVGITRAEKVCTISFAGNRRVFGQWQSQLPSRFIDEL PEEHVDVLTPPGLYGGGFGAAAPSASAVAEPAVRSTIEERMSNADGYNSPGWKRMQAR TAERGYSKPRKSEAQTIDLAATSSFTVGERVFHQKFGYGAVVGIEGDKLEVDFEKAGP KKVVARFVSASDDIPF" /product="DNA helicase II, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1174 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 59221..60672 /locus_tag="Silicibacter_69" /function="COG: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases" /translation="MKPCRRFLIWRMNLSPLRARPLAICCRGFRNWTPPEPACVLHAS SRPSERSLLRSEAPDPIPIESQTAETHPAQMSLCGLPRAKGIDSASVLQMMAGMTLDQ RYPALDDLRAKARTRLPRFVWEYLDSATGREATQARNRLCLDRIGLMPAILGGPQEVD LGTTLFGTPLPRPFGIAPVGMSGLIWPDAEGHLARHAAQTNIPYGLSTVASQSPEDLA PHLGAQGWFQMYPPKDEGIRKDMLERARAAGFKVLVLTVDVPVASRRERQTRSGLTQP PRLTPRLLAQVAIRPAWALGMARQHRGEGGMPHMRTLDKYIEGAASALSSTAHIGYLL RTAPDWAYLEWLRDHWEGPLVVKGVLDACDAPRLEAAGADAIWISNHAGRQFDAAPAP IEVLEDIRAATTLPLILDSGIEGGLDILRALALGADFVMLGRAWHYALAALGAAGPAH LHDILSKDLTANMGQLGIRTLAEVRDLKRLSLD" /product="FMN-dependent alpha-hydroxy acid dehydrogenase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO1172 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(60815..61249) /locus_tag="Silicibacter_70" /translation="MHRFVYVSTAKQDLTAQQIADIAGACHRNNRRAGLTGMLVAHQG RFLHILEGDEAAIRRRAEKIQHDPRHGDFKVLQAREIQMRAFLDWVFVHETPAALPLF GGVKVQPLRALLPINSPLRGRDLTVRHLVRDFLASFKQLLAA" /product="Hypothetical protein ycgF." /transl_table=11 /note=", BLUF, Sensors of blue-light using FAD" /note="Conserved hypothetical protein" CDS 61688..65128 /locus_tag="Silicibacter_71" /function="COG: Pyruvate carboxylase" /gene="pyc" /transl_table=11 /note="identified by match to putative ortholog SPO1171 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="pyruvate carboxylase" /translation="MTEFNKILIANRGEIAIRVMRAANEMGKRTVAVYAEEDKLGLHR FKADEAYRIGEGLGPVAAYLSIDEIIRVAKECGADAIHPGYGLLSENPDFVDACARNG ITFIGPKAETMRALGDKASARRVAIEAGVPVIPATEVLGDDMDAIRKEAAEVGYPLML KASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGEGYLEKMITRARHVEVQILG DKHGEIYHLYERDCSVQRRNQKVVERAPAPYLTDAQRAEICDLGRKICQHVNYECAGT VEFLMDMETEKFYFIEVNPRVQVEHTVTEEVTGIDIVQAQILIAEGKTLAEATGKASQ EEISLNGHALQTRVTTEDPLNNFIPDYGRITAYRSATGMGIRLDGGTAYAGGVITRYY DSLLTKVTAKAPTPEKAIARMDRALREFRVRGVSTNIAFVENLLKHPTFLNNEYTTKF IDETPELFQFAKRRDRGTKVLTYIADISVNGHPETEGRAAPAADLKEPRAPRADTGNL PYGTRNLLEQKGAKAVADWMKAQRQLLLTDTTMRDGHQSLLATRMRSIDMIKVAPAYA QNLSQLFSVECWGGATFDVAYRFLQECPWQRLRDLREAMPNLMTQMLLRASNGVGYTN YPDNVVQFFVKEAAKGIDVFRVFDSLNWVENMRVAMDAVVESGKICEGTICYTGDILD PARAKYDVKYYVGMAKELEAAGAHVLGLKDMAGLLKPASAKLLIKALKEEVGLPIHFH THDTSGIAGATILAAADAGVDAVDAAMDAFSGGTSQPCLGSIVEALKNTDRDTGLDIG NIREISEYWEQVRAQYAAFESGLQAPASEVYLHEMPGGQFTNLKAQARSLGLEERWHE VAQTYADVNQMFGDIVKVTPSSKVVGDMALMMVSQGLTRAQVEDPKSEVSFPDSVVDM MRGNLGQPPGGFPESIVKKVLKGEAPNVERPGAHLEPVDIESTRAELSKELEGFKVDD EDLNGYLMYPKVFLDYMGRHRQYGPVRALPTKTFFYGMEPGDEITAEIDPGKTLEIRL QAIGETDEKGEVKVFFELNGQPRVIRVPNRLVKSSTTQRPKAEVGNINHIGAPMPGVV ASIGVQVGQQVHEGDLLLTIEAMKMETGLHAERDAVVKAVHVQPGGQIDAKDLLVELE " /EC_number="6.4.1.1" CDS 65200..66108 /locus_tag="Silicibacter_72" /translation="MSEETTGQLPDVLWHYTTFDTLTAILTSQCLLASDFRDTNDREE ILFGFKALRDAFGTHNTWNTTEGFADPVSAAIRENEERIIEDLESSFLHGQMICLSSA RDSLSMWRGYGQLTNGGGNGAVAIGFCAADLQTFCGPSDATLQSSTAHIQQNASGGFE GPSNVDYAFRNFPQLSNALSNEDYSADFHLKWTHYLAHWMKHRKHPAFAEEREYRIWG HAYDGNDKGNSQHVVFVGNHDRRKFHLAPAPDDILGPLTHPLAIQKIMVGPKTDFAKV ERFTRNVFQSYTHDRPDMCASKIPFK" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="unique to TM1040, belas" /note="Hypothetical protein" CDS complement(66109..66594) /locus_tag="Silicibacter_73" /function="COG: Acetyltransferases, including N-acetylases of ribosomal proteins" /translation="MRQPHRPVIRFVRLSEIDPQEITAHMSDPLMAEHMPLLEGVEWN AAQTEQFVAAKEACWARDGLGHWGILSDDAYIGWGGFQKEDEEWDFGLVLRHSAFGRG IQVAKAALAVAAQDTRIPFVTFLLPPSRRHLGALRRLGAERLPDVEHAGRPFMKFRLV L" /product="hypothetical protein" /transl_table=11 /note="Hypothetical protein" tRNA 66886..66957 /locus_tag="Silicibacter_30" /gene="Silicibacter_30" /description="RNA" /note="Created by Search for RNAs Autoannotator" tRNA 67152..67223 /locus_tag="Silicibacter_2" /gene="Silicibacter_2" /description="RNA" /note="Created by Search for RNAs Autoannotator" tRNA 67405..67476 /locus_tag="Silicibacter_18" /gene="Silicibacter_18" /description="RNA" /note="Created by Search for RNAs Autoannotator" CDS 67642..68994 /locus_tag="Silicibacter_74" /function="COG: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase" /translation="MASVIYPTTNFTATEQLCITHGEGIYVYDDTGKQYIEGLAGLWC TSLGYSNTEVVEAITEQLKRLPFQHTFGGKTHAPVMELAEKLKAMVPVEDAYFFFGNS GSDANDSHYKMLRYYFNAIGKPHKRKIITRERGYHGVTVAAGSLTSLPANLAHFDAPL EALSILRTDAPHYYTGRQGNETEAQFVERILQNLEDQILAEDPDTIAAMIIEPITGAS GVIVPPEGYYEGLQALLRKHGILIWADEVICGFGRTGADFGCTTMGIKPDLMTFAKQL SSAYFPISASVIPGWMYKAMVDQTNEVGVFGHGYTYSGHPAACAAALKTLEIYERDKI FDHAAEVGTYLQEQLRATFTDHPLVGEVRGKGLIAALELVSNKTTGATIAGGKGGAAA VKACQTEGVILRAVAGNALAFCPPLIITKPEVDEMLKRTKAGVDAAYEALRSEGLLNS " /product="aminotransferase, class III family" /transl_table=11 /note="identified by match to putative ortholog SPO1166 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 69201..70166 /locus_tag="Silicibacter_75" /function="COG: Imidazoleglycerol-phosphate dehydratase" /gene="hisB" /transl_table=11 /note="identified by match to putative ortholog SPO1163 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="imidazoleglycerol-phosphate dehydratase" /translation="MVVDVFSHILAGGDIELHQQIIFATGGVEFRVDFMQRNILGHLI GGAGFAADLDKDTGGHFSPQLLSGLVGLQPRMWRKKGQSRQIQRRTVRGRSRHHIPPT IGAAPLSLSTSQPYKPSQQIEDFAMRTAQVSRSTAETEISVSVNLDGSGTYDNQTGVG FFDHMLDQLSRHSLIDMTIRAKGDYHIDDHHTVEDTGIALGQALVQALGDKKGINRYG ECHLPMDDAQVRAALDLSARPFLVWNVDLPTQKIGSFDTELVREFFQALATHGGITLH IDQIHGVNSHHIAEAAFKAVARALRTAVEVDPRKADAVPSTKGAL" /EC_number="4.2.1.19" CDS 70273..70911 /locus_tag="Silicibacter_76" /function="COG: Glutamine amidotransferase" /gene="hisH" /transl_table=11 /note="identified by match to putative ortholog SPO1162 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="imidazole glycerol phosphate synthase, glutamine amidotransferase subunit" /translation="MLTAIIDYESGNLHSAEKAFQRMATEVGAGDVVVTSDADVVARA DRLVLPGDGAFPACAAELRGHKGIYDAMVEAVEVKGRPFLGICVGMQLMATTGHEYED TPGLGWVDGDVVKITPAEAHLKVPHMGWNDLVINHPHPVFDGISTGDHCYFVHSYHFR VANPNERLAHVDYAGDVTAVIGRDTMLGMQFHPEKSQHVGLKMIGNFLTWKP" /EC_number="2.4.2.-" CDS complement(71165..71896) /locus_tag="Silicibacter_77" /function="COG: AraC-type DNA-binding domain-containing proteins" /translation="MDRLTTLIDRFRMRVVLAARGAGNLCVMQPEAGRQILVFTPEGW VEDTGAEGVGLALRVDWDGAHNPLVAALPQRVEVDLAEAPALASVLALLRQEREAHRC GAQSVVSSLGQVLMVRLLRHLIEAGTAAPGLLAGLADPRLARAIVAMHDAPGRSWTTS DLAQEAGLSLSRFSELFSAQMNETPMGYLRRWRLTLARQDLIRGDRVEAVARRYAYDS PEGFARAFRKFYGVAPVSLRQSTAA" /product="transcriptional regulator, AraC family" /transl_table=11 /note="identified by match to putative ortholog SPO1161 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 72076..72612 /locus_tag="Silicibacter_78" /function="COG: Peroxiredoxin" /translation="MLIPRQKTPDLTLPLLGGGQFDLASEASERGTVICFYRGLHCPI CANYLKEFEKRVADFAERGVKTIAISSDGEERTRQMAEKIEAENLRFAYDLPLSVAKD WGLYISTSRGKTSIGIEEPALFAEPGLFMVTPEQTLYYGSVQTMPFVRPHFSELVAAL DFAIANSYPARGEYTGAV" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1160 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 72730..72981 /locus_tag="Silicibacter_79" /translation="MYLRFEKFSHRDGQHRYLVLSLTPTLFGDWCVIQSTGPIGQPGG QERRNYCPTLGEAETLFESTRERQVKRGFVPIPVQMGLF" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(73032..73421) /locus_tag="Silicibacter_80" /function="COG: Uncharacterized protein conserved in bacteria" /translation="MKQILASIALIVGMSTAAFAADPIEGTWKTQPDDGSYAHIAMKP CGAALCGTIARTFNDGGEYSSPNLGKTLVMDMVPQGGGAYEGKVWRPSNDKIYIGKMD LNGNSLRLRGCVAGGLICSKQTWTRVK" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1159 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 73733..74455 /locus_tag="Silicibacter_81" /function="COG: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase" /gene="hisA" /transl_table=11 /note="identified by match to putative ortholog SPO1158 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase" /translation="MILYPAIDLKDGQAVRLLHGDMDKTTVFNDNPAAQALEFVAAGC EWLHLVDLNGAFAGEPVNAAPVEEILRQCKVPAQLGGGIRDMATIERWLDKGLARVIL GTVAVENPDLVREAARAFPGKVAVGIDARNGKVATKGWAEETDVEVTDLAKSFEDAGV AAIIYTDIMRDGAMKGPNIDATAALANAVSIPVIASGGVSSLEDLHALKSCGAALNGA ISGRALYDGAIDLAEALAVLKG" /EC_number="5.3.1.16" CDS 74595..75269 /locus_tag="Silicibacter_82" /function="COG: SAM-dependent methyltransferases" /translation="MPDGGSTARAAHRYCGPEPQHRRLPMSDKQTMAVYAKAAEDYAK GFARTKDTVHDRDYATFVAGLPDGGTVLDLGCGPGHWAARFRDEGLHVTAMDASPEMA RYAKDTYGIDVTVATFEDIDTTAHYDGIWAFFSLLHAPRTDFPGHLLRLHRALKPGGM LALGMKLGTGERRDTLGRFYTYYSEDALRALLAEAGFEVLGARCANSKGLAGARETFV VLTAHA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3211 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 75262..75735 /locus_tag="Silicibacter_83" /function="COG: Ribonuclease HI" /gene="rnhA" /translation="MPDLFAYTDGACSGNPGPGGWGALLRAMDGETVLKERELKGGEK ETTNNRMELLAAIHALESLARPSKITVVTDSAYVKNGVTGWIFGWKKNGWKTSAKKPV KNVELWQRLDAAQSRHDVTWEWVKGHAGHPENERADELARAGMAPFKSSGKSSKG" /product="ribonuclease HI" /transl_table=11 /note="identified by match to putative ortholog SPO3212 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 75849..76472 /locus_tag="Silicibacter_84" /function="COG: Predicted membrane protein" /translation="MTILTLLDYASVIVFAASGAMVASRAQLDIVGFAFIACLTAVGG GTVRDLLLDRHPIFWVGDPMPILLASGVAVLVFFTAHLVESRLRWVIWLDTFALAIAV PAGTGAALELGYGPVIIVLMGMATGSLGGLMRDVVCNEVPLVLKQGELYISCAMAGAS TAAILVWLGLPSGTALLACAGTTWVTRAGSLAFGWHLPVYKPRPPRQ" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3213 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(76526..76762) /locus_tag="Silicibacter_85" /translation="MSVVFLIIVGAAAGFIATRLMRIEADLITTIVIGIAGALIGGLV LRTLLAVMGLFAGLVGAILGAVALIFLWQKLQNR" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="unique to TM1040, belas" /note="Hypothetical protein" CDS complement(76844..77080) /locus_tag="Silicibacter_86" /translation="MMLALFGTVVIAGIIGYAAERSGFTQNGVIQSIIICVGGAFLFF FLRLMFGIGFNAPGWNAVVSSIGALIIVPFHWRR" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3215 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(77077..78090) /locus_tag="Silicibacter_87" /function="COG: Methionyl-tRNA formyltransferase" /gene="fmt" /transl_table=11 /note="identified by match to putative ortholog SPO3216 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="methionyl-tRNA formyltransferase" /translation="MARKRVRSGRGVHPALSLRRNGLRHKDSDMRVIFMGTPEFSVPV LDALVEAGHEIAAVYCQPPRPAGRGKKDRPTPVHARAEALGLEVRHPVSLKGSEEQQA FAALNADVAVVVAYGLILPQAVLDAPRAGCLNIHASLLPRWRGAAPIHRAIMAGDTHT GICIMQMEAGLDTGPVLLRKETEIGGEETTAALHDRLSLMGARMIVDALATLPDLKAE PQPEAGVTYASKIDKAEAQIDWSVAAEEVDRKIRGLSPFPGAWFEVDGQRLKVLASRL AEGTGAVGTVLDDKLTVACGSGAVELLRLQRAGKAAQDREVFLRGFTLAKGTNLLTAQ DAE" /EC_number="2.1.2.9" CDS complement(78160..78657) /locus_tag="Silicibacter_88" /function="COG: N-formylmethionyl-tRNA deformylase" /gene="def-1" /transl_table=11 /note="identified by match to putative ortholog SPO3217 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="peptide deformylase" /translation="MTTRTCLPWPDKRLRTKAAEVTEITDEIRAIWVDMIDTMEAMPG VGLAAPQIGVMLRLAVVDGSSERGRAVRLANPEILHASIELREHEEASPNLPGVSAKI KRPRAVTVRFLNEDGVIDRRDFVGIEATSVQHQIDHLNGKMYFDHLSKVKRDMLVKKA RKLAR" /EC_number="3.5.1.88" CDS complement(78654..79163) /locus_tag="Silicibacter_89" /function="COG: N-formylmethionyl-tRNA deformylase" /gene="def-2" /transl_table=11 /note="identified by match to putative ortholog SPO3218 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="peptide deformylase" /translation="MSLLPIVQWPDPRLSTACAPVGAAEDLGTLIDDVLETMYAAPGR GLAAPQVGVLKRVFVMDVDWKEGPRNPVVMIYPEVLWRSDDTTLAKEACLSIPGLSTR ITRPTKIRIRWQDADRAAQEQTFDGFAARCIQHEYDHLDGRVTFDHFSSEERRLLEAQ YLSQNEATA" /EC_number="3.5.1.88" CDS complement(79160..79684) /locus_tag="Silicibacter_90" /function="COG: N-formylmethionyl-tRNA deformylase" /gene="def-3" /transl_table=11 /note="identified by match to putative ortholog SPO3219 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="peptide deformylase" /translation="MKRSILIHPDPRLKKIATDVPDLSDDLRALADDMLETMYAAPGI GLAAPQIGVLDRLIVMDCVKEGEGDARPLVMFNPRVIASSDETNVYEEGCLSIPEQYA EVTRPKVVDVEWMDRDGNLQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITR KMQKLKRERARGTA" /EC_number="3.5.1.88" CDS 79843..81015 /locus_tag="Silicibacter_91" /function="COG: Aspartate/tyrosine/aromatic aminotransferase" /translation="MDFDKIIDRRGTHCAKWDMMEPLYGVTPEDGLAMWVADTDFPVP EAVSAKMREMADHGIYGYVNCEAQYKSAIQWWMESRHGWSVDADAIFTTTGLVNGVGM CLDTFTQPGDGIVLFTPVYHAFAKVIRLAGREVVECPMVQEDGAYKMDFDAYDAQMTG KEKMVILCSPHNPGGRVWTQDELTQVAAFCKRHDLMLISDEIHHDLVFGGRKHLPMAV AAPEISERLIMLTAPSKTFNFAGLHTGQVIIPDETLREQFRRRMMAIYLQGNTAGEFA TIAAYSPDGAAYVEELVPYIEANKRLFDEAVNAIPGLQSMELQSTYLAWVDFSGTGME REEFTRRVEQGARIAANHGTTFGTGGESFLRFNLGTQRARVEEACERLAKAFSDLQ" /product="aminotransferase, classes I and II" /transl_table=11 /note="identified by match to putative ortholog SPO3220 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(81128..81496) /locus_tag="Silicibacter_92" /translation="MTTYVPKSVQEALDKARIQGMKKKNRLRVHVGEEIYPVLRLWDR GFAVEEGAIPQLRGLVDLYEGTRHLSQCLIVAADAEAGEMRYEFKRATAAADSAPLDF YRAPDAPMGLLGHEQHIGDN" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3221 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 81737..82711 /locus_tag="Silicibacter_93" /function="COG: Predicted glutathione S-transferase" /translation="MGLLVDGKWEDVWYDTKSHGGAFKRSEAQFRNWLTADGSPGPDG QTGFKAENGRYHLYVSYACPWAHRTLIFRKLKGLEDHISVSVVHPDMLDKGWEFKTDA DGATGDALFGFDYMHQIYTKADPSYSGRVTVPVLWDKQENTIVSNESAEIIRMFNSAF DEITGNTLDFWPEELREPIETVNKRIYDTVNNGVYKSGFATSQEAYDAAVVPLFDSLD WLEDILSQHRYLMGEHLTEADWRLFTTLVRFDPVYHLHFKCNRRRIIDYPNLWAYTRE LYQMPGVAETVVMPHIVRHYHYSHDTINPNRILPINPVLDWEAPHGRG" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3222 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 82805..83800 /locus_tag="Silicibacter_94" /function="COG: Aspartate/tyrosine/aromatic aminotransferase" /gene="cobC" /translation="MAERSSFAATQDPAQASVSGSPRDHGGNLAAAIAQYGGSREDWI DLSTGINPAPYPLPPLLAEDWTALPDQDAQQALTDAARRFWQVPDSAEILAAPGASAL IARLPVLRPARSVQITTPTYNEHAAAFDNCGWQVLEVGPTDAQVVVHPNNPDGRLWLP EELKAPFCIIDESFCDICPERSLINRAAQPGTVVLKSFGKFWGLAGLRLGFAIGDPEL IAGLRAAMGPWAVSGPALRVGTHALNDQNWAEASRLELADGASRLDQLMQHAGAQTVG GTDLFRLYDVEDARAWQERLARAHIWSRIFPYSTRFLRLGLPPADRWSQLETALT" /product="cobalamin biosynthetic protein CobC" /transl_table=11 /note="identified by match to putative ortholog SPO3224 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 83797..84708 /locus_tag="Silicibacter_95" /function="COG: Cobalamin biosynthesis protein CobD/CbiB" /gene="cobD" /translation="MSTAALLIPAMILDAAFGEPKWLWSRLPHPAVLMGKLVQALDDR LNEGDGRQVKGVIAVAVLVFVGLLLGWILSWFGSLVSVLIAAILIAQRSLIDHVRAVA TGLQNDLDAGRSAVAMIVSRDTATMTGPQIARSAIESGAENFSDGVIAPAFWFLVAGL PGLLIYKLINTADSMIGYRTEAYEDFGWAAARLDDVLNILPARLSALLIALVTGRAGD WGEISADARKHRSPNAGWPEAAMARALGVALAGPRSYDGEMRPFAWVNASGSKSASAH SITRCCEVLWKSWGLALVLVVALGLLF" /product="cobalamin biosynthesis protein CobD" /transl_table=11 /note="identified by match to putative ortholog SPO3225 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 84751..85947 /locus_tag="Silicibacter_96" /function="COG: Membrane-bound lytic murein transglycosylase B" /translation="MRVLPSPNAVLHRIALITLLSAPSLAAAQCGGNFQNFVRGLKDE AVSAGYAINTVNEFFNGVSQDQKVLRADRSQGVFQKPFIEFSRRLISQDRLNRGRRKG EEFDKIFERIETTYGINRGVLLAFWAFETDYGAFQGDFNTRNALVTLAHDCRRPELFR PQIFSALELYRKGDFDPERTTGAWAGEIGMVQMLPGDILEHGVDADGDGHVTLKTSAA DALMSAARMLSHLGWRANEPWLQEVEIPAGMDVSASGPAYKQSVAEWSAMGVAPRSGG FAMKEAQASLLLPQGHNGPAFLAYPNFDIYFEWNQSFTYVLTAAYFATRLEGAQVYDA GNPDQGLSGDQMKELQRRLQARGHDVGDVDGILGANTRLAVQKEQLRLGMPADAWPTP ALLNAL" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3226 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(86008..89463) /locus_tag="Silicibacter_97" /function="COG: Chromosome segregation ATPases" /translation="MRFSKLRLNGFKSFVDPTDLIIADGLTGVVGPNGCGKSNLLEAL RWVMGETRAKAMRGGGMEDVIFAGTATRPARNFAEVSLQIDNSERLAPSGFNDSDQLD IVRRITRDVGSAYKANAKDVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKAR RRVLEEAAGISGLYQRRHEAELKLKNTEQNLLRVDDVIEQLATQLGQLSRQAKQAQRY REIGEKLRLAEGMLLYRRWREADEARLLAEEELRTRVTQAAKAEGSARLAAEKRAEAE EGLPPLREEEAIAAAVLQRLMVQRDALWDQDAQARQNIEHLNNRILQLGKDIERESGL NRDAGETIDRLEWEKRELAKAGEGHDDRMAEAAEIAQESTSILHNGEEHLSQVTEDVA RLAARHQSAQRLVEDCRRALERAQGEGAKSRSAQSAAQEALAASEAAYEAAVEAEEEA REAAEMAEEALAEADELRTETQAHETDARAKRSEAEGELGALRAEVTALAKLVERDTA EGGQVMDDLRVTPGYEKALGAALADDLRAPLADQDGPTGWLTLPSYQRDAPLPDGVEP LGKYVDGPDALWRRIAQIGVVDADEAARLQPLLQPGQRLVTLEGDLWRWDGFRSWAED APSAAAMRLEQMNRLEALKQDMAHATARTEGAQAAHEALVRKLEEVTRADQAARQARR VADQRVADSARALSRAEAERNLAEGKLENFGIAVARHEEDALTASLQLKEAENAQTAL EDLAEARAKVEDIKHRVEAARITMLTHRSALDELRREGEARTKRAQTVAKELSGWRLR LESAGKRIAELEERRETSQEELEDAMAVPGEIAETREELNEQISDAEARKAEATDALV AAEAVLREAVHHERESERLASEAREARARSEARSEAARETVDATAERIDEVMHLQPAE LLEQLQVAPEDMPDAETLEVEVARHKRQRDALGAVNLRAEEDAREVQSEHDALVTEKQ DLEEAVKTLRSGIASLNREGRERLLTAFEQVNSSFAMLFTHLFGGGEANLLMVESDDP LDAGLEIMCQPPGKKLSTLSLLSGGEQTLTAMALIFAVFLSNPAPICVLDEVDAPLDD ANVTRFCDLLDEMCRQTDTRFLIITHHAVTMARMDRLFGVTMQEKGVSQLVSVDLKKA EAMVA" /product="SMC protein" /transl_table=11 /note="identified by match to putative ortholog SPO3228 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(89593..90807) /locus_tag="Silicibacter_98" /function="COG: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs" /translation="MALSAQFASRIGRMKASEIRELLKLLDQPGMLSFAGGIPDPALF PAEAFAEAFQNALSPAHQAQSLQYSVSEGYLPLREWLATYMSKLGVTCGPEHILITSG SQQALDYLGKLFLSPGDTALVGWPTYLGALAAFNAYEPRYDRLRAGENQPTAHYAEAA KAAGGRVKFAYLSPDFANPTGETMTRAERLQVLATAEALDAAVIEDAAYQDLRFDGAA VPPILTLELERNGGDIESCRTIYCGTFSKTLSPGLRVGWLVAATPVVQQLVLMKQASD LHSPTINQIATCQVAEQLFDAHVDTLRSVYGRRRDAMLAALEAHMPEGVIWTKPEGGM FIWVTLPEGMSGAELLEYALSREKVAFVPGQAFYADATGRNTLRLSFSNSNEATIEEG VARLGRVIRSMV" /product="aminotransferase, classes I and II" /transl_table=11 /note="identified by match to putative ortholog SPO3230 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 90962..91729 /locus_tag="Silicibacter_99" /function="COG: Transcriptional regulators" /gene="pdhR" /translation="MPFQKVQPEKLSSAVVRQIEKLILRGILRPGERLPSERELSERL GVSRPSLREALGELQEQGLLCSRAGSGVFVADVLGSAFSPALIQLFASDDEAVFDYLS FRRDLEGMAAERAAKFGSDADLGVIQTIFDKMEAAGDPSVSEAAAELDAQFHSAILEA SHNVVLLHMMRSMFDMLRKGVFYNRRIMFGQHTTYEALLEQHRAINSALQSRDAKAAR AAVETHMDYVKQSLEEQIRAERNAEIAAQRLEHESKR" /product="pyruvate dehydrogenase complex repressor" /transl_table=11 /note="identified by match to putative ortholog SPO3231 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(91726..92547) /locus_tag="Silicibacter_100" /function="COG: ABC-type oligopeptide transport system, ATPase component" /gene="pstB" /transl_table=11 /note=", [EC:3.6.3.27] , Phosphate import ATP-binding protein pstB (EC 3.6.3.27) (Phosphate- transporting ATPase) (ABC phosphate transporter)., ABC transporter related, ABC transporter, 3a0107s01c2: phosphate ABC transporter, ATP-binding protein" /note="High confidence in function and specificity" /product="phosphate ABC transporter, ATP-binding protein" /translation="MFHSLPLLRKPSQIAEDVTPGPTVLRLQDFGLEAGGVQLLSGVT FDLRIGEALGLIGRAGAGKSLLMRAICRLLEQERQVVTRGSLQHRGQEIFGRGFDTPE MRAKVVYIPEVANPFPMSVWDNIAYGVKLNRIATRRREMADHVEAALRRCRLWDELKD VLHTQRATALPPYQQRLLCLARSLALNPDVVMLDQPTGSIDQQENESLHDIAMDLKTD HAVVFATASLADTARLADRVAYLEEGALVEIDSAEMILTAALAPQTRAFLESTSA" /EC_number="3.6.3.27" CDS complement(92787..93344) /locus_tag="Silicibacter_101" /function="COG: F0F1-type ATP synthase, subunit b" /gene="atpF" /transl_table=11 /note="identified by match to putative ortholog SPO3233 from Silicibacter pomeroyi DSS-3" /note="Specificity unclear" /product="ATP synthase F0, B subunit" /translation="MRATLAIALTLATTSPAFAAGGGWNLGNTDFVVILAFLLFIGIL LAAKVPSLIGKQLDNRADSIKSELEEARALREEAQTLLASYERKQQDVQAQAERIVAN ARDEAAAAAEQAKADLAASIARRLTAAEEQIASAEASAVKEVRDRAITIAVEVADQVI SKQMTAADANKLIDAAIQDVEAKLH" /EC_number="3.6.3.14" CDS complement(93347..93892) /locus_tag="Silicibacter_102" /function="COG: F0F1-type ATP synthase, subunit b" /translation="MATTTHDAGHGAAEAAHGSSGMPQLDFSTYGNQIFWLLVTLVVI YLILSRIALPRIAAILNERQGTITNDLAAAEDLKAKAVEAENAYNKALADARAEAQRI AAETRAEIQAEVDEAIAKADAEISAKAAESEKAIAEIRAGALESVKVVAADTASALVA ALGGKDDADAVKAAVAERTEG" /product="ATP synthase F0, B' subunit" /transl_table=11 /EC_number="3.6.3.14" /note="identified by match to putative ortholog SPO3234 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(93979..94203) /locus_tag="Silicibacter_103" /gene="atpE" /translation="MEGDLAYIGAGLAGMGTGIAALGVGNVAANFLAGALRNPSAAAS QTATLFIGIAFAEALGIFSFLVALLLMFAV" /product="ATP synthase F0, C subunit" /transl_table=11 /EC_number="3.6.3.14" /note="identified by match to putative ortholog SPO3235 from Silicibacter pomeroyi DSS-3" /note="Specificity unclear" CDS complement(94260..95063) /locus_tag="Silicibacter_104" /function="COG: F0F1-type ATP synthase, subunit a" /gene="atpB" /transl_table=11 /note="identified by match to putative ortholog SPO3236 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ATP synthase F0, A subunit" /translation="MGKLFFYVALALVLVSGLVFAPEKAELAIHPMDQFTVTPLFGGD HIAWYTPTNVTLWMFLAVAAIIGLLVFGSSNRGIVPSRAQSVAELAYGFIYKMVEDVT GKDAVKFFPYIMTLFMFIVTANFLGLIPMSFTTTSHFAVTAILAMLVFVTVTITGFVL HGAKFLGLFWVSSAPLALRPILAIIELISYFVRPVSHCIRLAGNVMAGHAVLKVFAGF AGALGAGAFLPIFAITAVYALEVLVAFIQAYVFTILTCVYLKDALHPSH" /EC_number="3.6.3.14" CDS complement(95103..95444) /locus_tag="Silicibacter_105" /gene="atpI" /translation="MIDDDQKQRMAQLEEKLAAAKKAHEEPEPRADEHYSMANQAWRM VTELVAGLVIGLGIGYGLDVLLGTTPIFMVLFILLGLAAGVNVMLRSAREIQDKQMAE AEQRADADKDA" /product="ATP synthase F0, subunit I" /transl_table=11 /EC_number="3.6.3.14" /note="identified by match to putative ortholog SPO3237 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(95654..96541) /locus_tag="Silicibacter_106" /function="COG: Permeases of the drug/metabolite transporter (DMT) superfamily" /translation="MALRYWAVIVILGIGWGMSFMFNAVLLRELAPLWVSVGRVGLGA LGCWMFLLARGRDWRISPARALALAGFGALSYAIPFSFYAIGQQHIASGVAGIVNACT PALAVVVTHFWPGGERANWRKSLGVGAGLAGIVILSLPILQSGQSSAIWAVFVTLGAP LCYAFSVNVARQFRDMEPVVLVAWALSGATAFILPVAFWVEGAPQALTAQAWGALLVI GFALTSAAFIAMYWVLPKVGPTNVTLPTLIAPASALTLGVLVLGEPLEISHLTGLSAI LFGLLLIDGRLFKSRVPAV" /product="Hypothetical transport protein yoaV." /transl_table=11 /note=", Protein of unknown function DUF6, Integral membrane protein DUF6" /note="Conserved hypothetical protein" CDS 96641..96970 /locus_tag="Silicibacter_107" /function="COG: Predicted transcriptional regulators" /translation="MNDTLDTVFAALADPTRRAILSMLLEDDMAVTDVAEPFEMSLAA ISKHLTILTRAGLIQQEKRGRVKWCKLQPDALRAASVWMQGFGQFEPVNLDAFERFLE EELRDGE" /product="transcriptional regulator, ArsR family" /transl_table=11 /note="identified by match to putative ortholog SPO3238 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(97013..97924) /locus_tag="Silicibacter_108" /function="COG: Permeases of the drug/metabolite transporter (DMT) superfamily" /translation="MELATRPRGLRDSHKGHLAMLAFSALVAGSFSLGALIANEVTPA ALNAVRFVLAGILIGAAAALGPGLKPQQFEAPWRYVLLGGVFATYFVLMFYGLQTADP VSAAAVFTLTPAMSGVFGWLLLRQITTPRMALALVIGGAGALWVIFRADMEAVLKFEI GQGEMIYFVGCVAHALYTPMVRKLNRGEPALVFTFGVLVAGAILLVALAWRDLAATDW AGLKPIVWIGLLYVSVFASACTFVLLQVATLRLPSAKVMAYTYLVPSWVILWEIALGK GWPPALIFGGIGLTIVALWLLLKDEHG" /product="integral membrane protein" /transl_table=11 /note="identified by match to putative ortholog SPO3239 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(97933..98811) /locus_tag="Silicibacter_109" /function="COG: Transcriptional regulator" /translation="MENWDEVRTAYQVARLGTVSGAADVLGVHHATVIRHIDAIEARL GVKLFQRHARGYTATEAGLDLLRVAQATDDQFSQLVGRLKGQGDEVSGELVVTSLSSM APMLAPALAEFQQLHPDLVIRYLTGDRLFRLEYGEAHVALRAGAAPEQPDNVVQPFVA QRLALYASREYVERHGMLKGQDDMVNHRFIASDNENTRAPFERWLRSTIPAENIVFRC SDAVAGHQAIRAGAGIGFVSLWEAASSPDLVMMMDPHDEWSGKIWLVTHVDLHRTNKV QSFVRFLKEHAKSWPQ" /product="transcriptional regulator, LysR family" /transl_table=11 /note="identified by match to putative ortholog SPO3240 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 98952..99533 /locus_tag="Silicibacter_110" /function="COG: Acyl carrier protein phosphodiesterase" /translation="MTQTVLHIDSSARKTGSISRDLTAQVVARLGAETVLHRDLSTPL PLLDETWIGANFTAPEERTESQKDVLALSDQLIQEIKQADTLVIGVPIYNFAIPTTLK AWIDQIARAGVTFRYTENGPEGLLTGKRAILVVASGGTEAGSDIDYASRYLRHMLGFI GITEVEVVAADQQAIDAEASVQKAKDAIAQLAA" /product="acyl carrier protein phosphodiesterase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO0383 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(99719..100246) /locus_tag="Silicibacter_111" /function="COG: Uncharacterized conserved protein" /translation="MTGKKVLRRRFPISSENLLANFIPGGFPNFCPEHAKLRSVEDAK TVEGALLYWEKQALRLKNLYLRDRKKRNYLVSLEQDRDVALKALGATLGGGGLSLGSA DRLMEFLGVRPGAVTPLAMINGAPKGVRFFMDAQAQHTDSIYMHPLVNTRTLAMPRAD LMVFFERIGVTPEWI" /product="conserved hypothetical protein" /transl_table=11 /note=", YbaK/prolyl-tRNA synthetase associated region" /note="Hypothetical protein" CDS complement(101532..102917) /locus_tag="Silicibacter_112" /function="COG: Cytosine deaminase and related metal-dependent hydrolases" /gene="gda" /transl_table=11 /note=", [EC:3.5.4.3] , Guanine deaminase (EC 3.5.4.3) (Guanase) (Guanine aminase) (Guanine aminohydrolase) (GAH)., Metallo-dependent hydrolase, composite, Amidohydrolase family" /note="High confidence in function and specificity" /product="guanine deaminase" /translation="MRCSQKGRDAGLRWALGLSPSLRKANLMSADAKILRGRTLTFHA EPNGPDDTAAYTCLEDGALLIRDGRIAAHGAYAEVLRAAPEAEVVDHRPHLLMPGFID LHLHFPQVQVVASWGEQLLDWLNTYTFPAEVQFADKTHADRMARAFFDLVLSHGTTTA VAFCSVHPASAEAYFAEAARRNMRMIGGKVMMDRNAPDGLRDTARQGYDETKALIERW HGKGRASYAISPRFAITSTPDQLEMAGALVAEHPDAYVQTHLSENRDEIDFTLSLYPD APDYLGIYERYGLVHDKTLLGHAIHLEPREIDLLAEVGGKPVFCPTSNLFLGSGLFDD GGLRAKGIQNGIATDIGAGTSYSMLQTLNEGYKILQLQNQKLHPLNAFHWITRGNAEV LGQLQEIGTLDVGSEADIVVLDVAATPAMALRAEAATSLSEELFILQMLGDDRAVVET YVAGEAMKPQS" /EC_number="3.5.4.3" CDS complement(102993..104252) /locus_tag="Silicibacter_113" /function="COG: Predicted membrane protein" /translation="MQELVIMWDWLGFAVRWLHVITAIAWIGSSFYFVALDLGLRKVP HLPVGAHGEEWQVHGGGFYHIQKYLVAPANMPDHLIWFKWESYATWLSGAALLMIVYW AGGELYLIDANKADLALWQGILISGASLSVGWLVYDFLCKSPLGEKPTMLMVLLFVLL VAMGYGYNQIFTGRAVMLHLGAFTATIMTANVFFIIMPNQRIVVKDLQEGRTPDAKYG KIAKLRSTHNNYLTLPVIFLMLSNHYPLAFATEYNWLIAALVFLMGVTIRHYFNTRHA GAGNPTWTWPVTILLFIAIMALSQAPLVQDTYEESEARTLTQTELAFAGSEHFEDVMN VVPGRCAMCHAREPYYDGIRRAPKNVLLETPADVAKYARQIYLQAGATHAMPPANVTY MEEDERALIRQWYADGAAELPFYLAGN" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO0869 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 104362..105276 /locus_tag="Silicibacter_114" /function="COG: Transcriptional regulator" /translation="MAYLNNIRTFVRVYELGNMSAAARDMRISAAVASSRISQLEEHL KVRLFQRTTRLLHPTEQGQLFYHGAVKILEAVEEAEADISNVTQTPRGTLYVAAPLGL GQRLIAPAVPQFNAAYPLINIRLRLSDRKLDLAAEGLDAAFFLGLPEDSNLKIRKITD CPRVLCAAPAYLKARGTPTSSAELKTDAHDCLNLRYPGAPEFQWPLHGPDGLRRVAVT GPFESDHGDVLTQWALDGHGIILKPVFEISEHLASGRLVPVLPDEPPATIQMACLYMH RRHQDPKVRLFLDFMVDHILASLPSDAA" /product="transcriptional regulator, LysR family" /transl_table=11 /note="identified by match to putative ortholog SPO0870 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(105349..105705) /locus_tag="Silicibacter_115" /translation="MSGYLTTHVLDTARGCPAEGIEIALYKVSAGAREKVAQTVTNSD GRTDSPILPAERFATGSYELVFFCGDYLRATGQAGEDPLFLDEVPIRFGMSEAESHYH VPLLLSPYGYSTYRGS" /product="transthyretin family protein" /transl_table=11 /note="identified by match to putative ortholog SPO0871 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(105727..105819) /locus_tag="Silicibacter_116" /translation="MMLVRASRAGRAHYGVKFSTKEMAQGRRGR" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 105905..107320 /locus_tag="Silicibacter_117" /function="COG: Predicted xylanase/chitin deacetylase" /translation="MTRYPRDMRGYGATPPHPAWPNGAKIAVQFVLNYEEGGENCTLH GDAASEAFLSDIPGAAQWPGQRHWNMESIYEYGARAGFWRLHRLFTGAGIPLTIYGVA SALARSPEQLKAMKDADWEIASHGLKWVEHKDMAEDDERASIKEAIRLHTEVVGTRPR GWYTGRCSANTVRLVAEEGGFDYISDTYDDDLPYWLEVGARDQLIIPYTLEANDMRFA TAPGWVTGSDFGDYLTDAFDTLYSEGAAGAPKMMTIGLHCRLIGRPGKIAALKRFIDH IQSHPGVWCPRRIDIAEHWATEHPHQRRQRPSQMDRDTFVGAYGSIFEHSPWIADRAF DLELGPAHDCAAGVHNALCRIFRSASEDERLGVLTAHPDLAGKLASAGRLTAESTSEQ ASAGLNLLTDAERETFTALNTAYVEKHGFPFIIAVRDHDKASIMAAFKRRIDNDRAAE FDEACRQVERIAEFRLMDLLP" /product="polysaccharide deacetylase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO0872 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 107317..107823 /locus_tag="Silicibacter_118" /function="COG: Ureidoglycolate hydrolase" /gene="allA" /transl_table=11 /note="identified by match to putative ortholog SPO0873 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="Ureidoglycolate hydrolase" /translation="MSRTLTARPLTAEAFAPYGDLLMPKPEPDKIINQGKCGRHHDLA QLDFADGRAGISLFVSEARHLPYEVELVERHPEGSQAFVPLDGVPMIVIVAPDADGSP GQPEAFLSAPGQSINLHRGTWHGVLAPFQQPGQYIVIDRIGDGANLEEHWFQEPWIVT EISAPAEG" /EC_number="3.5.3.19" CDS 107901..109340 /locus_tag="Silicibacter_119" /function="COG: Xanthine/uracil permeases" /translation="MSDTTIGTPEQLRDPDYMPPLGKAIPLGIQHVLAMFVSNVTPAI IVAGAAGFGFGSNSPDFPELLYLIQMSMLFAGIATLMQTLTLGPVGAKLPIVQGTSFA FLPIMIPLVAGKGVDALAALFGGVLIGGLFHAALGLVIGRIRFALPPLVTGLVVTMIG LALVKVGIQYAAGGVPAIGTPEYGSLLNWSAALVVIVVTLGLKFFTRGMLSVAAVLLG LIVGYIYALMVGMLSFDSIGASWSNAAAFALPQPFKYGFEFSFAAILGFCLMAFVSAV ETVGDVSGITKGGAGREATDKEIEGATFADGFGSALAGAFGAMPNTSFSQNVGLIAMT GVMSRHVVTCGAIFLIICGLIPKVGAVIRTVPIEVLGGGVIVMFGMVVAAGISILSDV DWNRRNMVIFAISLSVGLGLQLEPGALQHMPDTARILLTSGLLPAAVISIALNLILPE ELADESTEEVSGGMSGHSKGSLGTSRDAQ" /product="xanthine/uracil permease family protein" /transl_table=11 /note="identified by match to putative ortholog SPO0874 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(109414..110244) /locus_tag="Silicibacter_120" /function="COG: Uncharacterized protein, possibly involved in glyoxylate utilization" /translation="MTKPTYYAPHGGLPPQTQLLTDRAMFTEAYAVIPKGTNSDIVTS LLPFWEKARFWVIARPLSGFAETFSHYIAEVLPGGGSTRPETEAGVEAVLFVVEGQME LTLDGATHQMREGGYAFVPPASDWSLRNTSDAPVRFHWIRKAYQAVEGLEAPDAFVTN EQEVTPTAMPGTDGKWATSRFVNPEDLRHDMHVTIVTFEPGAVIPFAETHVMEHGLYV LEGKAVYRLNQDWVEVEAGDYMWLRAFCPQACYAGGPGKFRYLLYKDVNRHMPLAPLR " /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO0876 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 110442..111704 /locus_tag="Silicibacter_121" /function="COG: Putative glycerate kinase" /translation="MTQSMQDTALELFHCAIQRADPAAAVAAQLAAEPIAPLAPGGRR IVLAVGKAAVPMMRATLAALAEPPAAALVVTNPENLTDVPGAEVIAGSHPVPDQSSAD AGARVLSLVQTLTAADQLIVLISGGGSALMVAPAPGLSLADKATVNEMLLASGLEINR MNLIRQALSQLKGGGLCRAAAPAEVTALILSDVIGDDLRAIASGPTVAPLGQKADARA LLQAEGLWDALPAAVKTHLETPEDEREMPAAQNVLIGSNRFSLEAMRDHAKALGWHVP DLVDDLTGDVAEAAQRILDTAQTPAPDRPTALLFGGETTVRLSGTGRGGRNQELALRI AQAAKSLAGDWVFLSGGTDGRDGPTDAAGGLVTPDTWAEIARAGADPAALLANNDSYA ALKAADALVTIGGTGTNVADVQILLRRP" /product="MOFRL domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1564 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(111701..112135) /locus_tag="Silicibacter_122" /function="COG: Transcriptional regulators" /translation="MTHALPRTDRSLPIALLRARERVMGPVRQLLNGQDLTEQQWRVL RVVQESGPIDPTQIADQACLLLPSLTRILQKLQEKGLIDRARDETDRRRQVITLTDAG MQVIEANIDDSLALIERTREKMGAEDYEALLDLLRKLNGLDL" /product="transcriptional regulator, MarR family" /transl_table=11 /note="identified by match to putative ortholog SPO3689 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 112264..112659 /locus_tag="Silicibacter_123" /function="COG: 5-carboxymethyl-2-hydroxymuconate isomerase" /gene="hpcD" /transl_table=11 /note="identified by match to putative ortholog SPOA0320 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="5-carboxymethyl-2-hydroxymuconate delta isomerase" /translation="MPHITLDYAPRLAQFVDLPELCDTLRRAAINTGILPMAGVRVRA IAADHISIADGNPDHMYLDISVRLRGGRSLEARKAATQEIFAAARAVLAPVMASHPIA LSLEMRDIDPDLSPKCGSIRDHLSTGDPA" /EC_number="5.3.3.10" CDS 112656..114167 /locus_tag="Silicibacter_124" /function="COG: NAD-dependent aldehyde dehydrogenases" /gene="hpcC" /transl_table=11 /note="identified by match to putative ortholog SPOA0027 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase" /translation="MSDLAVNLDKLAGFLEEYRKSGITNLIGGEARPAASGQTFETTS PVDESVICSVARGGSEDIDAAAQAAKAAFPAWRDLPATERKAILHRIADGIVERAEEI ALCECWDTGQALRFMSKAALRGAENFRFFADRAPSARDGQMLPSPTLMNVTTRVPIGP VGVITPWNTPFMLSTWKIAPALAAGCTVVHKPAEFSPLTARILAEIAHDAGLPPGVWN LVNGLGEEAGKALTEHPDIKAIAFVGESKTGSMIMAQGAPTLKRVHFELGGKNPVVVF DDADLDRALDAAIFMIYSLNGERCTSSSRLLIQDSIAEAFEAKLLARVNSIKVGHPLD PQTEVGPLIHKTHFDKVTSYFDIARHDGATVAAGGSRHGDTGWFVKPTLFTGATNQMT IAREEIFGPVLTAIRFTDEDEALNIANDTQYGLTAYVWTNDVTRAMRFTNQLEAGMIW VNSENVRHLPTPFGGVKASGIGRDGGDWSFEFYMEQKHIGFATGHHKIPRLGA" /EC_number="1.2.1.60" CDS 114266..115246 /locus_tag="Silicibacter_125" /function="COG: Lactoylglutathione lyase and related lyases" /translation="MPIPAANLYPPFNITRLSHVEYGVTDLAASRTFYVDILGLQVTH EDDSRIYLRAMEERGHHCIILRQSDHAGVACLGFKLYDTPDLEKAAAFFEGKSLPVEW IERPFMGPSLRTRDPWGVPLEFYVKMDRLPPIHQQYRLYNGVKPLRIDHFNMFSANVD AAVAFYGEMGFRVTEYTEDDDSGRVWAAWMHRKGGVHDVAFTNGTGPRLHHTAFWVPT PLNIIDLLDLMSTTGYVANIERGPGRHGISNAFFLYVRDPDGHRIEIYCSDYQTCDAD LEPIKWSLTDPQRQTLWGAPAPRSWFEEGSLFDGAETRDSDLKAQPIIAP" /product="extradiol ring-cleavage dioxygenase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3688 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 115324..116736 /locus_tag="Silicibacter_126" /function="COG: Glutamate decarboxylase and related PLP-dependent proteins" /translation="MNWTDFASWGRKVADWAQDYHLTVGERPVRAQTKPGDMLTALPE TPPEQGEGMETIFADFEEKVMPGITHWQHPRFFAYFASNAAAPSVLAEFLTSAIAPQC MLWQTSPAATEMETRMMDWLRQSLGLPSEFRGVIQDSASSATLAAVLTMRERALNWQG NQQGLAGQPTLRIYCSSEVHTSVDRAIWVAGIGQANLVRVPIKGDWRGMDPAALETAI QSDKAAGLQPAGVILCVGGTGTGATDPIADCIKVAQNHGLYTHVDAAWAGSAMICPEF RAYWPGIEGADSIVFNPHKWLGAQFDCSAHFLKNADDLVRTLAISPEYLKTHGHDGII NYSEWSVPLGRRFRALKIWFLIRTYGLEGLRQRIRNHVAWSRQLHDALAQEPDFEIVT PPMWSLWTFRYAPDGATDLDALNLELVNRINDDGRIYLTQTRVDGVLVIRFQAGAFET TEADIMLAHDVITEIARGLT" /product="decarboxylase, pyridoxal-dependent" /transl_table=11 /note="identified by match to putative ortholog SPO3687 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 116736..117593 /locus_tag="Silicibacter_127" /function="COG: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)" /translation="MRFATYTAATETFYGVITDAGAIALSPEFPEWPTLREVIENKGL HTLAQAAKGRDVTHPLDQITYQIPVPRPEKIICVGVNFPNRNAEYKDGQDAPPNMSLF PRFARSFTGANHPLIRPPESPQLDYEGEIAIVIGKGGRRISEADAYDHIAAITLCNEG TIRDWVRHAKFNVTQGKNWDSSGAIGPWLVPFTAPAQLDDVRITTKVNGELRQDDRTS RMLFPIRRQIAYISTFTTLVPGDIIVTGTPTGAGARFDPPKFLKPGDVIEVEGEGIGI LRNAVEDEA" /product="fumarylacetoacetate hydrolase family protein" /transl_table=11 /note="identified by match to putative ortholog SPOA0025 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 117590..118390 /locus_tag="Silicibacter_128" /function="COG: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)" /translation="MTPDQHAEAAAQLLRAEETRQQCGLLSLAYPGMTLEDAYAVQKA LVTQKLAQGRRKIGWKIGLTSRAMQQALNITTPDSGVLLDDMVFENASTVPEGRFIQP RVEAEIAFVMKAPLAGRDCTHDDILKATEYVAPSLEILDTRILRADPATGQARIITDT ISDNAANAGIVMGKAKHAIDAFDLRRVGAILKRDGVVEETGLGAGVLDDPVTSVLWLA RRMADYGQQIEAGDIVLSGSFIRPVECPPGTQIHADFADFGSVEISFS" /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase, putative" /transl_table=11 /note="identified by match to putative ortholog SPOA0024 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 118403..119167 /locus_tag="Silicibacter_129" /function="COG: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase" /translation="MAAPINRFKEALKDGQRQIGCWCSFGEAVTTEVMGTAGFDWLVV DGEHAPNDIRSIRDQLVALATSPAEPVVRVPIGEAWIIKQVLDAGAQTVLVPMVETAE QAAELVRACHYPPHGTRGVGAAGARATRFGTTPDYIATADAQICVLLQVENRKGIENL DHILAVEGIDGIFIGPADLSTDMGHQGNSAHPEVRAVIADAISRIKAAGKAPGILGVT DEATQAYSDMGAQFLAVGLDVLVLAQGARTLAAKWR" /product="HpcH/HpaI aldolase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3686 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(119211..121163) /locus_tag="Silicibacter_130" /function="COG: Predicted metal-dependent hydrolase with the TIM-barrel fold" /translation="MLGTHLKLGLMSLCAATVAMGAAAQDVADTIYTGGPVLTMDDSA PRAEALAVREGRIAAVGSTEAVMALRGESTRVIDLEGATLLPGFVDAHGHVAAIGLQA MAANLLPAPDGRGNSIAELQDILRDFIDAQPERVERFGAVIGFGYDDSQLSELAHPTR HDLDAVAADIPVYIVHQSGHLAVANTAALALAGITAESEEMPGGVIRREADGKTPDGV LEETPHFVALGRILGGLDAEGSIEMVRAGVDLVASYGYTTAQEGRASTGQVQMMQALA AQPDGLKVDVVAYPDILIDRDFILEEQSFDYENGLRVGGAKLTIDGSPQGFTAWRDKP YYAPPPQMRSDYVGYPAASPDQVFDAIDWAYENDVQILTHSNGEAASDLLLAATGAAA EKHGNDDRRSVLIHGQFLREDQVDRIKALDIFPSLFPMHTFYWGDWHRDRTVGPEAAD NISPTGWVLKRGMRFSTHHDAPVAFPDSMRVLDATVTRRSRSGDIIGAAHRVDPMTAL KAMTIWPAWQHFEENTKGSLEVGKLADLVVLSADPTAIDPETIDQIRVLRTIKEDEVV YDASERDEGSLLQWRPVPGRIDTGSEMLRRAALMREIPQDLSGVRRRVALRAGSGPTH GATCVSGYLFATLTPGFERAKDRLIP" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2830 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(121307..121630) /locus_tag="Silicibacter_131" /translation="MTYRDDKTDNEDLAYGQTPWGCASTRKRLDSESMMLLRANLSEP LNRADSWPTLRELLRGKGFDMKRREGRLRLVDLQSRVEICTFGLLGHPRAELEKRFGA PMQAH" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(121799..123442) /locus_tag="Silicibacter_132" /function="COG: ATPases with chaperone activity, ATP-binding subunit" /translation="MRFVLSSVLVGAAALLSTTALAETFTAASRVSAVTVYPSEALMT RTAEVTLPAGRHRIIITGMPFVDEVETLQVTHPGVRRVGLYLRESFPVLEETATPEQA TAEARVAEIEDQIDALRQTAEEARLAAQGAEAAIAFLSALNRGEGAALPDPDQLRALV STVREETSEARETILRAKAQERGFQRQMKDLEAELARAQAELRALSQQDEEQMFLALD VEADEEVTVPLSLSYPNDAVSWGPSYAFNLQTGTSPEVTLRRDVMIQQATGEDWVDVA LRVSTSTPDQRINPHDLRPNRRWIEDEQQAKQRFTSESRVMSAAEPIVEAPIIVEDTG ASFGVVASEAGVSYSFDVPVSLRSGAELAYLTLPDVTFEAEVFAQAVPRRDPTAFRIA RIVNTSGEELLASSTTRYFVDGDLVGSGHFAGLTPDAELDLGFGPIDGLRLKRDLLDQ SEGGRGVISRSNQRDMVAEIEVENLTGQDWPLRVLDLVPFSDQEDLEITWSATPAPSE ENVDKQRGILAWDLDVSAGKTRTISLKTRLSWPEGMVLR" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3713 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(123608..124630) /locus_tag="Silicibacter_133" /function="COG: Aspartate-semialdehyde dehydrogenase" /gene="asd" /transl_table=11 /note="identified by match to putative ortholog SPO3712 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="aspartate-semialdehyde dehydrogenase" /translation="MGYRVVVAGATGNVGREMLNILAERQFPVDEIAVLASRRSLGTE VTFGDKTLKTQDLDTFDFTGWDMALFAIGSDATKKYAPKAAAAGCVVIDNSSLYRYDP DIPLIVPEVNPEAVHGYSKKNIIANPNCSTAQMVVALKPLHDRAKIKRVVVSTYQSVS GSGKDAIDELWDQTKAHYNPTDDYQRKVYPKDIAFNVIPHIDVFLDDGSTKEEWKMVA ETKKIVDPSIKLTATCVRVPVFVGHSEAINIEFEDFLDEDEARDILREAPGIMVIDKR EDGGYVTPKECVGDFATFISRIRQDSTLDNGLNLWCVSDNLRKGAALNAVQIAELLGR EVLKKG" /EC_number="1.2.1.11" CDS complement(124698..124796) /locus_tag="Silicibacter_134" /translation="MKPHRVGTFVMKSEIYVEQNRRPRSFGPNRAF" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 124895..126046 /locus_tag="Silicibacter_135" /translation="MTRADPFYDSLQKVQTFENLTGGTRFTPLPEEWYVGCCDIVDST GLLARGQYKTVNMIGASAIAALMNAFDHAPFPFVFGGDGTSFAVPPHLADRARQELAK LRAWVAQEFDVALRAALLPVADLRDAGRDVRVARFAASSHLDYAMFDGGGLAWLEEEM KAGRYEIPAADPVAPPDLEGLSCRWDNVPAVNGEILSLLVLPHANTDPAAFDALVARI LSEVSQTERAGHPLPAIGPKLRFPPPGLGIEARLLRGNAPAILRKLMLFFQSAFAGLI FLRGRPAGSFDPIHYRSTIATNADFRKFDDGLKMTLDCDAKTRTTLERLLKQAQAEGV ARYGLHVQAEALVTCIVPSPLQDDHMHFVDGASGGYAQAAQMLKGAARD" /product="hypothetical protein" /transl_table=11 /note="Hypothetical protein" CDS 126914..127294 /locus_tag="Silicibacter_137" /translation="MANILTVKHRENVHLDPKKLSELYSQLGETSAEDVVCRAIEELA VRLTHCERLWRQDDIDNLRKSARSLIAISEQIGMMAMANIARDVTDAIDADDSPAVAA TLFRLIRVGESSLTAVWEQHDLTV" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3716 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(126110..126955) /locus_tag="Silicibacter_136" /function="COG: Carbonic anhydrase" /gene="cah" /transl_table=11 /note=", [EC:4.2.1.1] , Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase)., Carbonic anhydrase, prokaryotic and plant, Carbonic anhydrase" /note="High confidence in function and specificity" /product="carbonate dehydratase" /translation="MDVFPMFDCQYVSHHNSPRIRYAPTACVQFAPHWLSKGFQALRK SLEFGENCGYQPRQSTTRGELMDYAKPLPHYLVTRYHGWKATSYEENQGWYRRLAKEG QRPRAMVISCCDSRVHVTSIFGADQGEFFIHRNIANLVPPYAPDGDHHGTSATVEYAV TVLKVAHLIVLGHSQCGGVQGCIDMCKGHAPALEEKTSFVGRWMDILKPRFASVEDIA DPDEQARQFERQAVVASLENLMTFPFIDNAVKAGELSLHGLWTDIGEGGLECYDPKSN SFLQV" /EC_number="4.2.1.1" CDS 127426..128844 /locus_tag="Silicibacter_138" /function="COG: Leucyl aminopeptidase" /translation="MQPHFAVPNLAVPTFAAATDAALPLHIVTERTLDAWLAEQDGAT AGWVRSMGFRASWGQVVVLPGPDGSLRGALIGAGTPKSRQRQRFLLAAAAAKLPESTY SLASELPADLSLEVECFGWLMAQYAFDRYAKNTGAKARLVAPDGVDAARIEAMAAGET FTRTLINTPAEHMGPAELQGAVESLAEAHGAEVRSIVGADLLEQNFPLIHTVGRAAER APRLIDLRWGSEGPTLTLVGKGVCFDTGGLNLKPGASMALMKKDMGGAANVLGLAHMI MATGLKLRLRVLIPAVENAISGPAFRPGDILTSRKGLTVEINNTDAEGRLVLADALAF AQEETPDLLISMATLTGAARVAVGADIAPFFTDREGDAVTLSSTAQDAADPVWRLPFH DAYEAMIEPGIADLDNAPAGGFAGAITAALFLRRFADEARYMHFDVFGWSQSNQPARP KGGVGQGTRALYQALPELLGLS" /product="cytosol aminopeptidase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3717 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 128841..129581 /locus_tag="Silicibacter_139" /function="COG: Cell wall-associated hydrolases (invasion-associated proteins)" /translation="MTRARIDRPVVDLCAAPAGARDRQLLLGDTVEILATSDGWCHLR AEKDGYQGWVPGTALAEPLTPTHWVSAPATHAYTKADFKSPDLVSLSLGSQVVVSGSE GRFAQTDQGFVPLAHLMPLAQRASDPVAVAETLLGTPYLWGGNSRFGIDCSGLVQLSC HACAIACPGDSGPQETALGQTLPDGTPYERGDLLFWKGHVGWVRDPLTLLHANAFSMA VTLEPLQSAITRIAEQGDGPVTAHKRLT" /product="NLP/P60 family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3718 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(130012..130296) /locus_tag="Silicibacter_140" /function="COG: FOG: GGDEF domain" /translation="MLLAEKAFESMREAQEENAWSARHDKLTGLGNRKYLEEVAVETS TGPLGATLLIAIDLDRFKEINDTYRHEAGDVVLEHTAQRLSEKIKTGP" /product="Hypothetical protein ydaM." /transl_table=11 /note="GGDEF, belas" /note="Conserved hypothetical protein" CDS complement(130381..130911) /locus_tag="Silicibacter_141" /function="COG: Prolyl-tRNA synthetase" /translation="MDATHAASEEGLPISCEDLLSQLNSWGISYVLHEHAPLRTVEDA KAVEGALLRPGEQALRLKNLYLRDRKKRNYLVSLEQDRDVDLKALGATLGGGGLSFGS ADRLMEFLGVRPGAVTPLAMINGAPKGVRFFMDAQAQHADSIYMHPLVNTRTLAMPRA DLMVFFERIGVTPEWI" /product="YbaK/prolyl-tRNA synthetase domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO3242 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(130999..131784) /locus_tag="Silicibacter_142" /translation="MPACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAM RAVDWDGGLFDYILAIEEAWHLRPDWTHMLHSDSLAPDDRPVLLEAGQQVVTEADYEP VLTHFGGAAYTGSDLVLAASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSN GARDLTAKARRLEYFASLCGCAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMV ARQLEQQYGDPASPNAQYPCAQGMAEIDAAWRRCFTLRDAAVA" /transl_table=11 /note="unique gene of TM1040" /note="Hypothetical protein" CDS 132101..133687 /locus_tag="Silicibacter_143" /function="COG: Signal recognition particle GTPase" /gene="ffh" /translation="MRGTRHKPAKEAEGMFENLSERLSGVFDRLTKQGALSEDDVKTA LREVRVALLEADVSLPVARDFVKKVQEQATGQAVTKSVTPGQQVVKIVHDALVETLRG DEDPGALKIDNPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLLASLDVYRPAAM DQLAVLGTQIGVDTLPIVKGQSPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDETLMK EVEDVRDVVSPRETLLVVDGLTGQVAVEVAEEFDNKIGISGVVLTRMDGDGRGGAALS MRAVTGKPIRFVGLGEKMDAIETFEPDRIAGRILGMGDIVALVEKAQETIEAEQAERM MKRMMKGQFNMNDLRMQLEQMQQMGGMQGMMQMMPGMGKMAKQVEESGFDDKMVKRQI AMIQSMTKKERANPALLQASRKKRIAAGSGMEVSDLNKLLKMHRQMADVMKKMGKMGK GKMLKQAMKGMFGKGGMPEMPGGMPGGMDPSQMDPKALEAAAKAMGGKGGLPGGLGGL GGLGGGMGLPGGLSGFGKKK" /product="Signal recognition particle 54 kDa protein 2" /transl_table=11 /note=", Signal recognition particle 54 kDa protein 2 (SRP54)., Signal recognition particle protein, SRP54-type protein, GTPase domain, ffh: signal recognition particle protein" /note="High confidence in function and specificity" CDS 133697..134227 /locus_tag="Silicibacter_144" /function="COG: Acetyltransferases, including N-acetylases of ribosomal proteins" /gene="rimL" /transl_table=11 /note=", Probable GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) (Glutamine amidotransferase) (GMP synthetase)., GCN5-related N-acetyltransferase" /note="High confidence in function and specificity" /product="Probable GMP synthase" /translation="MSSAPTIETDRLILRPHVAADLEAFWSFYQSDRSRYMDVPTSRS QLWAGMLAEVGSWEIFGWGGLAIETKDGQLAGQVCISQPPHFPELELGWIVFDGFEGF GYAFEAASAMRDYAFEILEVPTLVSYIDGNNQRSVALAKRMGAVEDLNARTYDAADQV YRHSPDSSGPGLEAYA" /EC_number="6.3.5.2" CDS 134224..134829 /locus_tag="Silicibacter_145" /function="COG: Acetyltransferases, including N-acetylases of ribosomal proteins" /translation="MSTPSIPVIETKRLILRGPEAEDYPNFKATFTSYRARFMGGPLN TYEAWMLYAAEIGHWQVRGFGMWMIHDKITDETYGMAGGWQPAGWPEREIAWIIWPEK AGKGYALEATHAARNYFYTQAGWDGAVSYIDPKNLDSIRLAERLGAKKDHEAQTIDGN DAVYRHPTPAQLRDSQLTHGIEMEIGHYADPLFKPKGWAID" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3251 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 134759..135130 /locus_tag="Silicibacter_146" /translation="MASRWKSAITPTRCSNRKDGPLTETTTDPVARAAALLKEHRESI DRLDAIIVYTLGERFKRTQAVGKLKATHDLPPSDPAREAKQIERLEDLAREADLDPEF AKAFLNFIIDEVIRHHKKHQE" /product="chorismate mutase" /transl_table=11 /EC_number="5.4.99.5" /note="identified by match to putative ortholog SPO3252 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 135190..135555 /locus_tag="Silicibacter_147" /function="COG: Ribosomal protein S16" /gene="rpsP" /translation="MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLL PKDSEERVKMDIEKIQAWLDKGAQPTDRVARMLEAAGVREKTERNNPNKAKPGKKAQE RAEEKAAKAAEAAEAADAE" /product="ribosomal protein S16" /transl_table=11 /note="identified by match to putative ortholog SPO3253 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 135560..136213 /locus_tag="Silicibacter_148" /function="COG: Nitroreductase" /gene="bluB" /translation="MTGPVQEAKGCFPQAFRAELDLLMKLRRDVRRFRTDPVDEAVLT RCLSAISLAPSVGLSEPWRIIRVESETARAAALQNFETANAEALADYSEDRAATYARL KLSGMREAPVQIAFFCDDETGKGHGLGARSMPEMRRYSVVTAVTLFWLALRAEGLGLG WVSVLDPARMARDLDVPQSWSLIGYFCIGHPERLSDTPELEQEGWEQRFAALPIETR" /product="cobalamin biosynthesis protein BluB" /transl_table=11 /note="identified by match to putative ortholog SPO3254 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 136252..136401 /locus_tag="Silicibacter_149" /translation="MGLIRMVIFTLVAFGAGVLYERSGARERCAAAGGDWTRTETGTG MICRM" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 136403..136918 /locus_tag="Silicibacter_150" /function="COG: RimM protein, required for 16S rRNA processing" /gene="rimM" /translation="MSDVSEDLICVGALAGSFGVRGEVRLKSFCANAEEIEDYSPLLG ADGQTRYTLAITRAIKGGFAARIVDVETKEQADALKGVQLYAPRDRLPSLPDDEFYHA DLIGLEVYDTGGTLLGRVKAVQNYGADDLLELHGPGLSATVLLPFTKAAVPTVDLSQG RIIADPPAGVF" /product="16S rRNA processing protein RimM" /transl_table=11 /note="identified by match to putative ortholog SPO3255 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(136919..137929) /locus_tag="Silicibacter_151" /translation="MEQRPGGHMSDTSNQSGPDLDRERVAQALGIATDRARWRLIKST AAREVFLLEGTDCDPLVVKYDDDVSQVRFGELLSCYRSLERVMGRDGAFRMVPLVWAD AENRVLALKYVPGLTAYARLEAAEIDFDSRADVLRHCGAWLRQLHQSASDTPQPFDGE GMLKRVRRVAKTIRSGSQEVAYPKKFLGICAFMHHVTRGAQGRPCRHGTRHGDFHSRN VVFGRDGPLYALDPAPRDTGPVAFDVARFMTRLGYSFGLARTQTRGLAGLPAADWVAL SAGYGHPCQDDPVVHFLLCHQLFNDWLQMPVEKEHRSASQQRRIERIVSMFEVLRQQL QT" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 137992..138792 /locus_tag="Silicibacter_152" /function="COG: tRNA-(guanine-N1)-methyltransferase" /gene="trmD" /transl_table=11 /note="identified by match to putative ortholog SPO3259 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="tRNA (guanine-N1)-methyltransferase" /translation="MSKPTKSHGRLSIGASLKPRELMSDTPDLAGVWKAKILTLFPEA FPGVLGESLTGKALQQGLWQLETVDLRPFGIGKHKNVDDTPAGGGAGMVLRADVLGDA IEHAMQGTAGNWPLIYLSPRGRRMDQQMMQTFARCDGLTLLCGRFEGVDERVLEHYGI QEVSLGDFVMTGGELAAQALIDATVRLIPGVLGNQASTEEESFSSGLLEHPQYTRPAD WKGRAIPDVLMSGHHGKIAEWRQDMSEKITQERRPDLWAAYQARKSKT" /EC_number="2.1.1.31" CDS complement(138793..139185) /locus_tag="Silicibacter_153" /translation="MILRHCFVLGFSALVVAGCDYAGPTSDAAVQKRAQNDALWAERV TVRDGAKPYAFSADRARGVALIAPAAAGFAYTVADLERITAAQTECKAVFQDGILDLL KGYSETTNLRSTQEQLDSFNRWQLKLDC" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 139342..139674 /locus_tag="Silicibacter_154" /gene="yegP" /translation="MAAKFELYTDNAGEFRFRLKAGNGENILASEGYKQKASAENGIE SVKKNAADEARFERKETAAGKHMFNLKASNGQVIGTSQSYASASGRDGGIESVMRNAP EARIEDLT" /product="Hypothetical 12.7 kDa protein in ptx operon 5'region" /transl_table=11 /note=", Hypothetical 12.7 kDa protein in ptx operon 5'region (ORF117)., Protein of unknown function DUF1508, Domain of unknown function (DUF1508)" /note="High confidence in function and specificity" CDS complement(139751..140176) /locus_tag="Silicibacter_155" /function="COG: Predicted transcriptional regulators" /translation="MKLLDIGEVAKQSGTKPSTLRYYEDKGLIQSLSRNGLRRQYGPM VLEQLALIALGKQGGFSLDEIGAMFGPEGQPEIARTELDARADEIQRQAQRLEALSDM MRHVATCPASNHMECDKFQRLLRLATRIQRRGGTPKGKS" /product="HTH-type transcriptional regulator hmrR" /transl_table=11 /note=", HTH-type transcriptional regulator hmrR (Copper efflux regulator) (Copper export regulator)., Putative DNA binding" /note="High confidence in function and specificity" CDS 140244..141458 /locus_tag="Silicibacter_156" /function="COG: Sugar phosphate permease" /translation="MTAAPSTLPALDRRAVALLLAATLTTMANAAISPALPGLEARFA DHPQAALLTRFLVPAPSVAVVLIAGWAGVLADRLGRRPMLIGGVLLFALAGSLGMVLG SLEAILLSRLALGVAVALIMTAQTALIADYFDGAARSRVLGLQISARNLGGLVSITLA GVLALMSPMHAFAIHGLALLILPILWCAISEPKRPSPATTARGAPPATTQRLGLGLWA IAGLQMLTTICFFTMPTQVPFFVASHGIKNTAIIGSVMGALTLAGMLAATRYSTLKPR LGHARLFLLGYGLMGLGMAVLALAPGLAMIFLGAALVGLGFATVSPNFNEIALRAAPA DLRGRAAGIMTTSVFLGQIVSPFLTLPMVRHAGYSGTFATLAVLLGLAALVALLAYGV TRGATDAAERAS" /product="major facilitator family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3735 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 141722..142093 /locus_tag="Silicibacter_157" /function="COG: Ribosomal protein L19" /gene="rplS" /translation="MDLIAQLEAEQIAALGKEIPDFKAGDTIRVGYKVTEGTRTRVQA YEGVCISRKNGSGIAGSFTVRKISFGEGVERVFPLYSTNIESIEVVRRGRVRRAKLYY LRSRRGKSARIAEDANYKAKA" /product="ribosomal protein L19" /transl_table=11 /note="identified by match to putative ortholog SPO3257 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 142105..142326 /locus_tag="Silicibacter_158" /function="COG: Ribosomal protein L31" /gene="rpmE" /translation="MKKDIHPDYHFIDVKMTDGTVVKMRSTWGNEGDQLALDIDPSAH PAWTGGSSRLMDTGGRVSKFKKKYEGLGF" /product="ribosomal protein L31" /transl_table=11 /note="identified by match to putative ortholog SPO3256 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 142611..143420 /locus_tag="Silicibacter_159" /function="COG: ATPases involved in chromosome partitioning" /translation="MAHIIVVGNEKGGAGKSTVSMHVATTLARLGYKVAGLDLDLRQR SLGRYLENRLAFIAASDLNLPMVSLHELPEIDPDTLQPGENIYDLRLSAAISELEPIY DFILIDCPGSHTRLSQVAHSLADTLITPLNDSFVDFDLLAHTDEKGEKIKGPSVYSEM VWNARQLRAQAGLPPIDWIVIRNRVGTQRMVNKEKMERAINMLSKRIGFRVAPGFSER VIFRELFPRGLTLLDLKDVGVKQLNISNIAARQELRDMMKALELPEVEIDI" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO0689 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(143611..144924) /locus_tag="Silicibacter_160" /function="COG: Adenylate cyclase, family 3 (some proteins contain HAMP domain)" /translation="MLRSCAECCGNWPAWSRRLTARLDQQQGDGAIHAATEDLKNWLT EQGLKAVGREELLRRFCEELVNHGVPLLRMQLSQRALHPEFGGIGFTWTRQDGLNSEY FERVDHKEPRNEWVQSPFFALISSGEAEYYSRFSREDEARFPIFTRLKEMGATSYFAH WQPFGDFSQAQFDPDSPNAEGLVASWSFDGPPEEAEPCLALLRNVFGTLALVLAAAGN REMGRALLQVYLGRDAGARVLSGEIARGSSQRIDAVICLFDLRGFTALSESLPGEELV DLLNDYFGHVVQLIQSHGGNILKFMGDAVMAMFNLGTLQEDAQAALRAVAELGPRMRA VNEVRAAEGLPLAEYTMALHAGEILYGNIGAPNRLDFTVIGPAVNLTARIADMHRAVE RSIILSEDVRDAAGADGADLVSVGRYMLRGVAEPIELFTLYQPET" /product="adenylate/guanylate cyclase" /transl_table=11 /note="identified by match to putative ortholog SPO0688 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(144854..145312) /locus_tag="Silicibacter_161" /function="COG: Transcriptional regulators" /translation="MSKNDDFAVQDFLPFLLNRAAEDSSLEFQKLYKGRYGMLRTEWR VLFHLGMYTRMTASDISQRARIHKTKISRAVAKLAARRWVSRSRDESDRRSEHLELTA AGRSVYEDLRQQAQVYDQRLTQGFSAEDVALLRRMLRQLASMEPPADRTP" /product="transcriptional regulator, MarR family" /transl_table=11 /note="identified by match to putative ortholog SPO0687 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 145389..146744 /locus_tag="Silicibacter_162" /gene="hmgA" /translation="MTRHALPDQMIQAPSNQGTHEGYMPGFGNDFETEALPGALPQGM NSPQKCEYGLYGEQLSGTAFTAERPERTWCYRIRPSVKHSHRYEKIDLPYWKSAPHIP EDVISLGQYRWDPVPHTEEGLTWLTGMRTMTTAGDVNTQVGMATHIYLVTESMKDEYF FSADSELLVVPQEGRLRFATELGIIDIEPKEIAILPRGLVYRVEVLEGPARGFVCENY GQKFDLPGRGPIGANCMANPRDFKAPVAAFEDREAPSTLTVKWCGQFHETKIGQSPLD VVAWHGNYAPYKYDLRTYCPVGAILFDHPDPSIFTVLTAPSGQPGTANIDFVLFRERW MVAENTFRPPWYHKNIMSELMGNIYGQYDAKPQGFVPGGVSLHNMMLPHGPDREAFEG ASNSNLGPEKLDNTMSFMFETRFPQHLTEFAAKEAPLQDTYIDCWSDLEKKFDGTPGK K" /product="homogentisate 1,2-dioxygenase" /transl_table=11 /EC_number="1.13.11.5" /note="identified by match to putative ortholog SPO0686 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 146862..148118 /locus_tag="Silicibacter_163" /function="COG: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)" /gene="hmgB" /transl_table=11 /note="identified by match to putative ortholog SPO0685 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="fumarylacetoacetase" /translation="MPLKKSWVTSANSADHPFPLNNLPYGVFSTPDSDPRCGVAIGDM ILDLAAAEAAGLIDLADEPMFEMPFWNEFMEEGPAVWAALRTRLIALLEEGSDAQNKV EPCLVPMSGAEMHMPIMVSEYTDFYAGRHHATNVGTMFRGAENALPPNWLHIPIGYNG RASSVVVSGTDVRRPWGQLKGPNDDAPRWAPCARFDIELEMGAIVGTPSDGPITVQDA DDHIFGYVLLNDWSARDIQAWEYQPLGPFQAKATATTISPWIVTKAALEPFRCDTPAR EVELLDHLKDCGPMLYDIDLAVTLRPEGGEEATIARTNYKEMYYSAAQQLAHHTTSGC PMNAGDLLGSGTISGPNKDERGSLLELSWGGKEPLTLPSGDTRSFIEDGDTLTLKGAA KGEGYTIGFGDCTGTVLPALSDPFAR" /EC_number="3.7.1.2" CDS 148201..149151 /locus_tag="Silicibacter_164" /function="COG: Zn-dependent hydrolases, including glyoxylases" /translation="MAKAFASQGDMSEKKISFTEVGEGLYAFTAEGDPNSGVIIGDDS VMIVEAQATPRLANKVIECVRSVTDKPISHVVLTHYHAVRVLGASAFGAQNIIMSDTA RAMVVERGQEDWDSEFQRFPRLFEGHESIPGLTWPTTTFSDSMTVYLGNRRVDIKHLG RAHTAGDAVIHVPDQNVMFTGDIVEYHSACYCGDGHFGDWGKTLDNIKAYDVDAIAPG RGDALVGKDMVNAAIENTRDFVESTYRPAAKVAARGGSLKEAWDAVRDACDPKFKDYA IYEHCLPFNVARAYDEARGIDTPRIWTAQRDLEMWEALQS" /product="metallo-beta-lactamase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO0683 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 149274..150881 /locus_tag="Silicibacter_165" /function="COG: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases" /translation="MNKIFEVPLYPYARHADQDAQPPARHKVVVVGAGPVGLAAAIDL AQSGVPVVVLDDNDKVSFGSRAICFAKRTLEIADRLGVGHAMADKGEEWNVGKVFFGD RKVYDFNLLPEDGHQFPAFVNLQQYYIEEYLVDRVRALRDEGAPIEIRGKNRVTHVED LGGHVALTVDTPDGAYQLETGWLIACDGAGSPLRAQMGLDFVGRVFEDNFLIADVVME ADFPTERWFWFDPPFNKGQSALLHKQPDGVWRIDLQLGWDIDKEEEKRPENVIPRLKA MLGEDVQFELEWVSIYTFQCRRMEKFRHGRVIFAGDSAHQVSPFGARGANSGLQDTDN LIWKLKLVLDGVADESLLESYNAERIAAADENILNSSRSTDFITPKSDMSRIFRDAVL DLSEHHSFARPLVNSGRLSLPSVYDGSRLNSADRLPGAPTRTRPGAPCPDVPLEGGYL LPQLASGFTLLAINAEVPDGFEEAGVFVPALRLNGEASAPLAERYLGEASSAVYLIRP DQHVATRMDHFDPAHFHAALRRAIGKE" /product="monooxygenase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO0682 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 150887..151093 /locus_tag="Silicibacter_166" /translation="MSDDLTLTPNLAQPDDAYALLLSAHEGLSKAQSDALNARLILLL ANHIGDAEVLKQALTQAKQGLTDG" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO0681 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 151086..151733 /locus_tag="Silicibacter_167" /function="COG: Glutathione S-transferase" /gene="hmgC" /transl_table=11 /note="identified by match to putative ortholog SPO0679 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="maleylacetoacetate isomerase" /translation="MADVVLYDYWRSSASYRLRIALNLAGIAYESRSVDLVAGAQRSP EHLARNPQGFVPVLEIDGERFTQSLACLTYLDSTRGLGLLPQEPVARAHVEALAQSIA VDLHPVCNLSVARFGVTSSGGSLQMGDWMRQFIGPGLEAFDRLLARWPEPGEGSFCTG ARPGLADICLMPQLYNARRWEVDLNPFPRLQRIEASCAAHPAFAAAHPDHHQPAQ" /EC_number="5.2.1.2" CDS 151870..153084 /locus_tag="Silicibacter_168" /function="COG: Uncharacterized conserved protein" /gene="yvcK" /translation="MSKTAPSPPAPASAPGSDPGSDPGPAHVRPPGRDATQGPRLLFF SGGTALNEISRRLKAYTQNSVHLITPFDSGGSSQVLRKAFGMPAVGDLRSRLMALADE TDRGQPEILRLFTHRFAKHASERNVTQDAARLFEGTHPLLQGIPTPVRQQIREDLRQF QDAAPADLDYRNASIGNLILAGGYLRHGRQLEPVLAQMSRMVAVRGTVRPIADVNLEI GAELRDGRRVIGQRRMTGKEHAPLTSPIARLFLSDGTRELPADAVPLPQSNQDLIAGA DLICYPPGSLYSSVICNLLPKGVGQAIAARNVPKVYVPSLGTDPECLAMTLSDQISAL LAPLRRDAGDVATSAFLSHVICDLSVSEAARAEVLRDHGIPCIARPLAVSSGKSPCYA PDALCRQLLALA" /product="Hypothetical UPF0052 protein sll0154." /transl_table=11 /note=", Protein of unknown function UPF0052 and CofD, Uncharacterised protein family UPF0052, CofD_related: conserved hypothetical protein" /note="Conserved hypothetical protein" CDS complement(153160..155367) /locus_tag="Silicibacter_169" /function="COG: Membrane carboxypeptidase (penicillin-binding protein)" /translation="MTQGRNSGRGTGRGRGPLVAEKRNLGGNQRKPAKKAPRKRAPQK AKRGWSLFGRRKTARPQRRRGLLGWLLLPFQIVARVIWAVSWRMGVVGGLFLAGAVAF HYTKLPEYQALLDGRHQGSVTLLDRNGKTFAWRGDQFGGVVTADTVSPHLKNAIVATE DKRFYRHFGISPRGIASAVRINLSEGRGPLSGHGGSTITQQTAKLMCLGVEYDPDIWE SEAAYESDCRQSSLWRKGKEAIFALAMEVKYTKNEILSIYMNRAYMGGGAHGVEAAAQ RYFGKSANQVNPPEAAMLAGLLTAPSTLAPTNNIERSRNRAATVLRLMEEQGYLSPKE RQMAAANPAELSEAAAARAGGYFADWIMDTVPSFLGDQTTEDVVIRTTLDQRLQQAAE DAVNYVFENKVRAGSKAQTAVVVMSADGAVRAMVGGRKVRASGVFNRATQAKRQTGSA FKPFVYAAALELGYSPYDRVLDAEYCLDIPGSGPWCPQNYTRKFYGEVTLARALRDSL NVPAVKVSEAVGRDKVRLVAGEFGIESDLADGPSLALGVSESTLLEMTGAYAGILNGG SSVTPYGVEALTLVGDSEPLMGASGGMGERVIRPVAAQELIWMMEKVIAEGTGQRAQI PGWQAAGKSGTTSSAKDAWFIGFTADYVAGVWMGYDDNTPLTGVTGGGLPAEIWRETM VRVHDGLAPQPLPMAAPEPIVVPEPQPQRRNGGGFGRELERTLNGVLQDIFGN" /product="penicillin-binding protein, 1A family" /transl_table=11 /note="identified by match to putative ortholog SPO3725 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 155657..155995 /locus_tag="Silicibacter_170" /function="COG: Nitrogen regulatory protein PII" /gene="glnB-2" /translation="MKLIIAAIKPFKLEEVREALTKLGVSGLMVTEIKGFGAQAGHTE IYRGAEYEVNFVPKVKLEIVVPSDLADQVVETITQASRTGKIGDGKIFVLDVAQAVRV RTGETNQDAL" /product="nitrogen regulatory protein P-II" /transl_table=11 /note="identified by match to putative ortholog SPO3724 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 156025..157347 /locus_tag="Silicibacter_171" /function="COG: Ammonia permease" /gene="amt-2" /translation="MKKLTVTLAATALATLPGLAFAQEAAAETPDINPYIFTTLLFLI GGFLVFWMAAGFAMLEAGLVRSKNVTMQLTKNVALFSIAAIMYWLVGFNLMYPGDGWI IPGVMGPLFATTSLEPVGLGADAAALDYASVGSDFFFQLMFCATTASIVSGTLAERIK LWPFLIFVAILTGVIYPIEASWVWGEGFLDGLGFSDFAGSTLVHAAGGFAALAGALIL GPRIGKYKDGRTIPMPGSNLALATLGTFILWLGWFGFNGGSQLAMGTVGDVTDVSRIF ANTNMAAAAGAVTALILTQLLFKKPDLTMILNGALAGLVSITAGPLDPTLFGALLIGA VGGVIVVFTVPMLDKMKIDDVVGAIPVHLLAGLWGTFAVPFYTEGTSFITQIVGFATI GIFTFVVSGVVWMILKATMGIRVSEEDEINGLDMAELGMEAYPEFKGS" /product="ammonium transporter" /transl_table=11 /note="identified by match to putative ortholog SPO3723 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(157420..158064) /locus_tag="Silicibacter_172" /translation="MRGVFFTVLTAAGLVAGAAQAEGERAGAFDYYVMALSWSPNWCA IEGDAKGSEQCDDRHDYGWTLHGLWPQFHRGWPSYCRTTEAPPTRRQTGEMRDIMGSP GLAWHQWKKHGTCSGLSARDYFALSRQAYDTVTRPEVFRRLDKAVRLPASVVEEAFLK ANPSLTADSLTITCRDGFIQEARVCLSRDLDPVPCGRDVIRDCTLSNATFEPVR" /product="ribonuclease T2 family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3567 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 158234..159001 /locus_tag="Silicibacter_173" /translation="MAKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDV AAGVKGFDPIANNQLTQEEITTAENNPLHKLKLKFNAAAAGEEKRRGPRYTPLSKRQD RPNSILWLVKFHPELADAQIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQ SELDAAVQKAAKKRAAEGGVMNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGS SDEDDKKEDEIVDADSFFNLPASSDEDEDDDSDDPRY" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3566 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 159213..159713 /locus_tag="Silicibacter_174" /translation="MTLQVTLTPDLVQAPLVTFGFDPFEARLVSIMRHFVAAANAPGS QAWHRAFVIAAENWGEAHGLAVAHTLWPVVRELLELREGDFTSNDPLDLDTRDLLTTD EAQFIAMLHHMRRDHTAKARDAVEALTHGQMNPDLIRAGLSFADRFPSGARQRLRGTP ALRVVG" /transl_table=11 /note="unique gene to TM1040, might have function in sulfur transfer, belas" /note="Hypothetical protein" CDS 159842..160693 /locus_tag="Silicibacter_175" /function="COG: Rhodanese-related sulfurtransferase" /translation="MDDPKTLVSTDWLAAHLKDPDLRILDASWYLPQMERDAKAEYDA EHIPGARFFDIDEISDHRSDLPHMAPPVEKFMSRLRAMGVGDGHQVVIYDGAGLFSAA RVWWLFRLMGQVNVAVLDGGLPKWKAEGRPLEDLPPVIRDRHMTVRVQNHLVRDVTQV SSAAKLGDHEIIDARAAERFRGEAPEPRPGMRAGHIPGSKNVPFTTLLNDDGTMKDAE TLRSLFEAAGVDLTKPAITSCGSGVTAAVLSLAMERMGKHDHALYDGSWSEWGAFPTL PVATGDN" /product="thiosulfate sulfurtransferase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3719 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 160697..161881 /locus_tag="Silicibacter_176" /function="COG: Aspartate/tyrosine/aromatic aminotransferase" /gene="tyrB" /transl_table=11 /note="identified by match to putative ortholog SPO3720 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="aromatic amino acid aminotransferase" /translation="MFENLKPQPADKILALMQMYREDPRDQKVDLGVGVYKNAEGVTP VMRAVKAAEQRIIDEQTTKAYTGLAGDPAYADAMIDLILGTSVERSKIAAVATPGGTG AVRQAFELIKMANPEARVFVSDPTWPNHVSILKYVGIETVVYRYFDTETRAVNFDGMI EDLKGAKTGDVVLLHGCCHNPTGANLNISQWQAVVELLNERGLIPMIDIAYQGFGDGL EEDAAGVRLVASSVPECLIAASCSKNFGIYRERTGLLMAISQKGDEAGLNQKTLAYLN RQNYSFPPDHGARVVTTILNDPELRADWQKELEETRLGMLALRQQLADELQRLSGSDR FGFIAEHRGMFSLLGTTPELVEKMRVDAGIYMVGDSRLNIAGLNAQTVPILAKAIIDA GV" /EC_number="2.6.1.57" CDS complement(161983..162597) /locus_tag="Silicibacter_177" /function="COG: Enoyl-CoA hydratase/carnithine racemase" /translation="MIDHHQDSRGLLTLRLNRPEKANALTPEMLAQMIEILRTATEAR ALILTGTGKVFSAGADLDAAKAGLATSPLWEELSGALAALPCLKVAALNGTLAGGANG MALACDLRIAVPTAKVFYPVMQLGYLPQPSDAKRMRALVGPARTKLILAAGQKITAEE AYGFGLIDRIVAPEELMAEAEALVAPALAAEPDVARAILRAADA" /product="enoyl-CoA hydratase/isomerase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3439 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(162594..163343) /locus_tag="Silicibacter_178" /function="COG: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /translation="MKFANKTIVISGASRGIGASAAKEFAAEGANVVLLARSADALEA LAQEIGEKALALACDVADYAAVEATFARARDHFGSLDVLICNAGMIDPIARLEEADPA GWAQLINVNITGVFNMMRAGLPHLKAAGGGAVLTIGSGASQRPLEGWSAYCTSKAGAA MLTEALHLEEGENGIRVMGLSPGTVATQMQREIKASGINPVSQLAWEDHIPAEWPART LMWMLSADADEFVGTEIALRDEGIRKRVGLI" /product="20-beta-hydroxysteroid dehydrogenase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3440 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 163478..164992 /locus_tag="Silicibacter_179" /translation="MSISFVRKLGAVAPVLLIAQAAHADVTAQDVWADWKDYMSSTGY EITATETESSGKLTVSDITMSMDVEGDSFSMTMGSLDFIENGNGTVNVVMPTTFPMSF NVNADGDAISGDLLYTHDGSPMVVSGDTSEMAYNYTGATSAISLANLVIDGDAVPADA IMLNVNVTDMVSNTLMKIGDVRSYSQTMTMASVAYDFMFQEPEGDDGAAFNGALQGLE FTGDMTIPEVDDPSDLAAMLKAGMAYVGGFTFESGNTNVKGSDGPDNFDFQTSSNGGA INIGLSPAGLNYDVTQRDTTLNMMGSDIPFPVSLSMKEMGMNFAMPLTKSDEEQDFAL GIALREFAVPDMLWGLIDPAGELPRDPANLVVDLSGKGKLFFDLVDEEQMAAVESGEE MPGEVNSLSINEILLSVAGAELTGDGAFTFDNTDLESFDGMPAPEGEASLKLVGANAL IDKLIGMGLVSEDDAMGARMMMGMFTVPAGDDTVTSKIEVNEEGHVLANGQRLK" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO3441 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 165054..166475 /locus_tag="Silicibacter_180" /function="COG: Predicted Zn-dependent proteases and their inactivated homologs" /translation="MAQSPCDTAALWLALVQCHPFAKVPMTQTPETLCHALLDAAQKA GADSADAMAAEGSSLSIEVREGALEHAERSEGVDIGLRVFVGQRQAQVSSSDTRPETL TAMAERAVAMAKEAPEDPYAGLADPAQLAKSWDLDALEMADPSAEPAPDQLQQDALAA ESACAAIDGISQVQSAAAGYGRHDIHMAASNGFSGGYARTSRSISCVGIAGTGTGMER DYDGDSRIYQTDLRSAEEIGRTAGERAIERVNARRPKTGAYPVLFDERISSSLIGHLL GAANGASVARGSSWLKDSLGAQILPEAFSVIEDPLRPRVSGSRPFDGEGLPTQRRAIV DKGVLTGWTMDLASARKLGLESTGNAARGIGSVPSPSNWNIALTQGQQTREELLRDMG TGLLVTSMIGSTINPNTGDYSRGASGFWVENGEIQYPVNEVTIAGNLLDMLKTLVAAN DARTHLSRVVPSLLVEGLTLAGE" /product="PmbA" /transl_table=11 /note="identified by match to putative ortholog SPO3442 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 166462..167262 /locus_tag="Silicibacter_181" /function="COG: 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase" /translation="MPENDLSLLIGAAQKAGEIAGQFTGTEAQKWDKPDGAGPVTEAD LAVNRYLEDSLRAARPDYGWLSEESEDDPTRQSRARVFVIDPIDGTRSFADGSRTWAH SLAIVEQGTPIAAVVYLPQRDLLFAAASGQGATCNGARLQTTRAQNPETAHILSAKPT LEAKHWQGGTPPGFQRSHRPSLAYRMSRVADGSYDAMLTLRPTWEWDIAAGVLIVQES GGRATDRDGAPLRFNRADALQNGVVAGGPKMHRALLNRLVYGAQGSKP" /product="inositol monophosphatase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3443 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 167262..168458 /locus_tag="Silicibacter_182" /function="COG: 3-deoxy-D-manno-octulosonic-acid transferase" /translation="MFGPGGTQIPNPLRLKRPEGELVWAHATTQERLLGLCDVGCRLK MMRPDLSVMLTWEEDMRPAKLPEGCDIPLGPLTVEQPNDIRNFLDNWSPDVCVWAGGR LRRLLMRHMREREMPALLCDIDADELPSRASRWLPDQRHRLLNGFAAILVPGTEVSER LKRAGVAPERIHPAGRLFQSSTPPSCNDDELAQMQKQFASRPLWLAAHVSLSELPAVL KAHRGALRLLHRLLLVLTVDTFEDLDAARSLLRKEGLSFADWDMGEDPEDHTQVAIGL TENLGLWYRLCPISFLGNSLIRGAQGTNPLDAAALGSAILHGPGVVAHAQAYQRLAAL DAAERIHGEEELADAVFRLSSPDRAAEMALAGWQVVTEGAVMTDTLLERIQDLLDQSE LSHAPA" /product="3-deoxy-D-manno-octulosonic-acid transferase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3444 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 168445..169446 /locus_tag="Silicibacter_183" /function="COG: Tetraacyldisaccharide-1-P 4'-kinase" /gene="lpxK" /transl_table=11 /note="identified by match to putative ortholog SPO3445 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="tetraacyldisaccharide 4'-kinase" /translation="MRPPEFWNKPPSHFDLRACLLSPLGALYAKGTATRLRKGAPTRA PVPVICVGNLNAGGTGKTPTVIWLMEQLGAAGHEVHVVSRGYGGRLEGPVQVDPRRHS AADVGDEPLLMAAFGEVWVARDRGAGVTEAAAAGASVIVMDDGFQNPSVAKDFSIIVV DAKRGFGNGRCLPAGPLREPVATGLSRADLVLSLGDARAQETFQSIWGAEIPVPHLTG HVEPLPTGMPWQGTKVLAFAGIGHPEKFFATLRGLGAELCRAEALEDHQTLAPALLTR LEQEARLLGAQLVTTEKDAVRLPLSFRPKVITLPVRLRVAQGDTLLARLKDIAPPPD" /EC_number="2.7.1.130" CDS complement(169483..170184) /locus_tag="Silicibacter_184" /function="COG: Thiol-disulfide isomerase and thioredoxins" /translation="MTRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANA QESSQGAEAAEVDTSTIMEMVQGAEDAPVTLIEYSSYTCPHCANFHADAYKKLKAEYI DTGKVKLVYREVYFDRFGLWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVE ALKKIGRVAGVDGDALEACLQDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQ PYEDLKALIDAELEG" /product="thiol:disulfide interchange protein, DsbA family" /transl_table=11 /note="identified by match to putative ortholog SPO3446 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(170181..170708) /locus_tag="Silicibacter_185" /translation="MAYRHSSTRGFKRTGSLLNDQIRKAGESRGFAVSRLLTHWEEIV GPELAAMARPVKVGYGRGGFGATLTVLTTGAMAPMLEMQKAALREKVNAVYGYNAISK LHITQTAPIGFADGQVDFRYAPKTRKQEEPAPEDVAAAKETATGVENDDLRAALERLG RNVLTRQKSLRKGYK" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3447 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 170794..171855 /locus_tag="Silicibacter_186" /function="COG: A/G-specific DNA glycosylase" /gene="mutY" /transl_table=11 /note="identified by match to putative ortholog SPO3448 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="A/G-specific adenine glycosylase" /translation="MRDHPVSAEQLSQDLLVWYDTHAREMPWRVGPAARASGVRPDPY RIWLSEVMLQQTTVAAVKDYFERFTRRWPRVGDLAAAEDGDVMAEWAGLGYYARARNL LKCARVVAEEFEGVFPDAYEGLIALPGIGPYTAAAISAIAFDRPETVLDGNVERVMAR LHDEHEPLPAVKPVLKAHAAHLTPSARPGDYAQAVMDLGATICTPKSPACGICPWRDP CRARVKGTAPELPKKTPKKPKPTRYGFVYLARSAEGDWLLERRPDKGLLGGMLGWPGS EWNDAPTETPPFDADWQDLGAEVRHTFTHFHLILQVRSAELPADFEPRAGQELVRRHD FRPSSLPTVMRKAFDLTHR" /EC_number="3.2.2.-" CDS 171936..173078 /locus_tag="Silicibacter_187" /translation="MTEFIPTEKLRDWRHALPFWLSLALVPLVWAGAYLGSWWVLMTP LATWYLFAVLDGVLGLELENADPQTAEADLKWYVRLTSVWVPIHVLCLFGLIAYVSDA THLSRLEKIGVFFGMGVISGTIGINYSHELMHQRSRLERWLADILLAMVLYSHFRSEH LLVHHRYVGTPRDPVTARYNEGFHRFYPRVLWQCWRSAFGAEADRLARKSLPWTHRSN PFWRYWALQLGMLALAFALGGLSGVLLFLVQASAAIWQLELVNYIEHYGLTRKHLGDG KYEHVKPHHSWNAAHKASNWLLINLQRHSDHHYKPDRRFPLLQNYSASEAPQLPYGYP VMSIAAMIPPLWQRIMNPRVRRWRKQYYPEITDWKPYNRHQTPMPR" /product="fatty acid desaturase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3449 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(173284..174780) /locus_tag="Silicibacter_188" /function="COG: Methyl-accepting chemotaxis protein" /gene="mcp" /translation="MVTSPFQKVYVMSQIHRDELLFWFGLGEEDRSSIVGMAPLVERH IDAVLDDFYDLCLSRPETKGYFPTEQIVAHAKAAQRAHWVKLFSGRFDDSYMSSADKV GRVHFEVDLPFHLFLGGYATVGDRILKVVLTQKNGWRGTKARMKQARALQRLILFDCE RVIAGYIDAQLQEREKALTVMTQGIQRLESGDLTTEMPSGDKGGLPERYDNVRLSYNH LLRHWSGILSDATRRAHSVDAKMAETARMTREMAHRSGEQASTLNETVTSVNSMTCST RLTSEKVNDAAKQIEANRLVAEEGGAVVRDAITAVERIEQSSSQINKIVDVIDEISFQ TTLLALNAGVEAARAGEAGKGFAVVASEVRALASRATDAADDIKKLIATSSDQVLEGC QLVHQTGERLDSIRSSADNVARIMQEVDGVIFEQTGQLENISERMERLDRYTQDSADQ ANEVSSTADALAQDSAALKASMDGFKTGDIALREAAQDKEFERLANRG" /product="Heme-based aerotactic transducer hemAT" /transl_table=11 /note="Bacterial chemotaxis sensory transducer, Methyl-accepting chemotaxis protein (MCP) signaling domain, Heme-based aerotactic transducer hemAT (Transducer HtB protein)., , belas" /note="High confidence in function and specificity" CDS complement(174808..176202) /locus_tag="Silicibacter_189" /function="COG: Adenylate cyclase, family 3 (some proteins contain HAMP domain)" /translation="MADVALTKADPPARASLDPILQDDALQSQHIHAALEEHKKRGVE MAVLARWIIMPMVAVFLIAVYPEPSQLYYVALLALLCVNGFFIRRFARVGRSRAELGL IMLDLVLMTFGMVVPNPFDPNEMPVPMLYQYDNFMYFFIILATGALAYSWRTVMAIGV WASVIWLGAAGLMWAFMTPDEELARRLSEVLVDWPHVQDLYNPNDVGFRFRIQEAMVF LMVAAILAQSTRRFYLMLDQNADLARERANLSRYFSPNVVDQLSQNDEAISQVRTSRI AILFVDIVGFTRLAEHRDAVEVIELLRGFHGRMEAEVFRHGGTLDKYLGDGLMATFGT PAPGPQDASDALACARAMCAVLDQWNAERRATGEPEIHAGIGIHFGEAVQGDIGANRL EYAVIGTAVNIASRLEGMTRPMQARIVMSDALYRRVQEEGGAAALLRGFHCTPEQTIR GLQEPMPVWALTSL" /product="adenylate/guanylate cyclase" /transl_table=11 /note="identified by match to putative ortholog SPO3450 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 176269..176361 /locus_tag="Silicibacter_190" /translation="MSRHMQKTPPDRRGKVQRAEPLGSALSAFE" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(176386..177555) /locus_tag="Silicibacter_191" /function="COG: DNA modification methylase" /translation="MTHLVDNQNERKSAVVIEAEQMNKTIAKGAATALPLNTILDGDC IERMASLPSNSIDMIFADPPYNLQLKGQLHRPDNSKVDAVDDEWDQFSSFGVYDQFTR AWLKEARRILKPNGALWVIGSYHNIFRVGTALQDEGFWILNDVVWRKSNPMPNFRGKR YTNAHETMIWASKSEGAKYTFNYEALKALNEGIQMRSDWVMPICTGHERLKDANGDKA HPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRKVA EERIKNVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQA" /product="modification methylase" /transl_table=11 /note="identified by match to putative ortholog SPO3451 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(177601..178290) /locus_tag="Silicibacter_192" /function="COG: Ribonuclease HII" /gene="rnhB" /transl_table=11 /note="identified by match to putative ortholog SPO3452 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ribonuclease HII" /translation="MRPFFCAAFGAPSCMRAANALSGGMDYPDLSLEEAAQARGYTRI AGVDEVGRGPLAGPVTAAAVVLDLADLPEGLNDSKKLTPRRRAALEPEIMARASYAVA HASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIPRALHIPAEAVVKGDGR SLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHRDALIKIGVTPHHRRS FKPVHKILYQE" /EC_number="3.1.26.4" CDS complement(178334..178801) /locus_tag="Silicibacter_193" /translation="MTRLASSTRNLHRKFIAAVIATALVITGFSAAPARADSDDIAKF IAGAAILGIIGAAINDHKKDRHRPPHVDPTPAPKPLPPRVRRYDLPAQCLTSIRVHGK ERNLLGMHCLRRNYTHVNTLPNRCYREFDNRTQSRRGYRPACLRQYGYRLVRL" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 178980..179273 /locus_tag="Silicibacter_194" /translation="MKHTRLLPALLLLLLALAQPAQAAGCYADYKAKQDQPLKLHYGV MELSGDCSKAAAKGEVAERLSRAGWTLLNVLTVFGPEGLEQRKADAGRNFLRF" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3453 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 179245..179946 /locus_tag="Silicibacter_195" /translation="MPDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDG NAFNARIERLFVENDLTTQAEIKLLEILAQSGTAFADTLASYRMVIFVLLVFATAMMI AALVVLAMLVMLNRRMAQIERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVL AEARLDDDVLSGAEIEAVISGKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAK RGYVLAINKDVIRMV" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3454 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 180524..181714 /locus_tag="Silicibacter_196" /function="COG: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis" /gene="spsC" /translation="MHQGEPIPEAARDAIEALMQSGDLFRYTAPQDAPVSLLETEFAE LLGSKYALAVSSCSAALFLSLKALDLPRDARVLIPGFTFAAVPSSVVHADCVPVLCEV GENYRINMADFEAKLDQDIAAVIISHMRGHTSDMDAIMALCEARDIPVVEDAAHSLGT TWHGRNIGTIGKVGCFSFQSYKMLNAGEGGILVTNDADVVARAVIMSGAYEHNWQKHK PARGDNGTALAEAFGRWQNLLPLYNLRMSNLSAAVIRPQIPELARRVADGLKNHDYVA AKLNAHANFHVPAPLAPERRAPDSIQFNLVGMDDAQIEAFAKATADKGVKVQIFGRST DNARAFWNWQFLKDLPELPETRAMLMRACDVRLPVRLTQDELDVIAQILLSSVEETMA RAAA" /product="Spore coat polysaccharide biosynthesis protein spsC." /transl_table=11 /note=", DegT/DnrJ/EryC1/StrS aminotransferase, DegT/DnrJ/EryC1/StrS aminotransferase family" /note="Conserved hypothetical protein" CDS complement(181780..181911) /locus_tag="Silicibacter_197" /translation="MRLGVRVDMLRGSAPARLRHIKMWRRPLGRAPRCRAAGDRALM" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(181964..182521) /locus_tag="Silicibacter_198" /translation="MAEQDKPLLIKRYASRRLYNTETSDYVTLEDIAGFIRDGREVQI IDLKTGDDLTRQYLLQIIAEHESRGENVLPVNVLNDLVRSYMVPGGGVMPQFLQASFD MFRDSQSKMMENMNAMNPMAQMPGFEAMKAQQEAFLKAMTGGFGGGWTGGGGEDGSPA AEGEEDLGDIKRQLAELQEKLSKLS" /product="polyhydroxyalkanoate synthesis repressor PhaR" /transl_table=11 /note="identified by match to putative ortholog SPO1294 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(182849..183295) /locus_tag="Silicibacter_199" /gene="phaP" /translation="MAKTQDFSAMMKDMMASFPVDTSAMEGFFKSSAALNEKLSAVAL DAAEKNAEISSKWTKDTLTKMGEISKAKTEPADYAKAATDFASASAEVAAENMAAFAE VAKKVQMDTVELLMAAGKDMSEEASAVVKKATEEVSTAAKKAAAAK" /product="phasin, PhaP" /transl_table=11 /note="identified by match to putative ortholog SPO1293 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 183731..184069 /locus_tag="Silicibacter_200" /translation="MRASPAPSLRLPGDCISGGGAAISLFMPSGLISATKRPRHRDPA LRRGTQTTDRQTTSGSITSTGQKRRVCLDGPHWRSRGARASGFSMRAVRHGRFAAPGL WSPRDARPRN" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 184165..184935 /locus_tag="Silicibacter_201" /translation="MPPAPASKCSLLLARFQPRRVSRGASWLGLSLTFCLLALLLSAC GRSPTEREQMFLGKIHGESLDYSRLRLVEGAPLRAVTFRRPQRPRVTCRERILPPRPA GELVTASPAALALFNHIFFTRDWFLPDYTPEYPEALHLVEAMLLAHEATHVWQWQNRA VTGYTPLKALGEHSRSSDPYLFDLDGPADFLAYGYEQQGTIVEEYVCCRALAPDAART QRLHAMLARVMPVSDLPQSRESDVYLPWKDAKVAGICD" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1128 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(185102..185785) /locus_tag="Silicibacter_202" /function="COG: ABC-type spermidine/putrescine transport systems, ATPase components" /gene="lolD" /translation="MSEVTLKIEGLRKTYLAGTPGEVAVLRGVDLTLHAGEVVALVAP SGAGKSTLLQIAGLLDVADAGRVEIAGQDMAGARDRKRTRVRRQDVGFVYQFHHLLPE FSALENIVLPQLANGISQRDAEARGAELLALVGLETRAAHRPAALSGGEQQRVAFCRA LANRPRLLLADEPTGNLDPATSDQVFEVLMQLVSETGLSALIATHNLELAARMDRVLH LEDGVLVER" /product="lipoprotein releasing system ATP-binding protein" /transl_table=11 /note="identified by match to putative ortholog SPO1124 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(185778..187061) /locus_tag="Silicibacter_203" /function="COG: ABC-type transport system, involved in lipoprotein release, permease component" /gene="lolE" /translation="MAATAPFSRFEWMIAWRYLRARRSEGGVSVMTWISLIGITLAVF ALIATLAVRSGFRSEFVGTILGANAHATVYAHGTVTAAGTLDRRITDYAALAEAVGQV PGVLQAAPLIKGQVMASRGDRNAGVQVYGIHAEDLAKIPGVAQSDVAYGDLGRFDDGI ALGSGVARTLGLGIGDKVKLISPNGVKTAFGTSPRVNAYEVVYVFTAGRYDIDNTRAY LPFAEAQSYFNREGVADEIEVMVADPEAVDQYVLPLLQAAGQGYGVWSWRDSSGGFLR ALEVEDNVMFVILSILVLIATMNIVSGLIMLVKNKGRDIGILRTIGLSEGSVMRVFFI CGSITGVIGTVLGVILGCLFAIYIDPIFSFVNYVMGGGVWDPSIRGIYALPAELRAGD VISAVSLSLGLSFVVTIFPARRAARLNPVEALRYE" /product="lipoprotein releasing system transmembrane protein LolE" /transl_table=11 /note="identified by match to putative ortholog SPO1123 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(187150..187662) /locus_tag="Silicibacter_204" /translation="MITRMVTLLGGAGAGLGLSQFPAYAQAYLQRLGGHVDALRRTVA EFDADAAALGLERHAALVQLAQGGEMGAARAETMAATIDRYGRLSSDLHELSAMAPVE RALHLGRFAEAEIASATLSAFEPAVAVSLDALLLAAIGALVGGGLIWGMMAGGRRVLA RRPAGRDRLA" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(187951..188373) /locus_tag="Silicibacter_205" /function="COG: Predicted thioesterase" /translation="MPAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGL TASDMREGRRLSFAVVNVQSNFRAELAAGDAIRLETSIIDVGTKSMTFRHRMFRADEN LLAFETVFKCVMFDLEARISRDIPDEVRARASQFLEEA" /product="hypothetical protein" /transl_table=11 /note=", Thioesterase superfamily" /note="Hypothetical protein" CDS complement(188400..189194) /locus_tag="Silicibacter_206" /translation="MDRSPYYGTDKIMALQRARDAQVADFADLAGAVIHARTFSSDDP AALGWDYLKKVMADEGMVTLRGADQATIAAAKSELSDFDPRLHVWDLFMADAETIRRV CDPIVQNSLPAGMRQISEAEMTPEKAREVQVFLTQQGVSPFSTDALLGRLFPARLIAL QNASDRIAAAGFAAMTHNRHSPFFNSAWVGLIAVDPELRGLGLGKHVDAICNLVAVTE LGAAATMEFVAPDNAPSRAMLESCGLRQVEGKSVVMFSTSTDRLTR" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(189399..189929) /locus_tag="Silicibacter_207" /function="COG: Dihydrofolate reductase" /translation="MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYK LALMGRKTYEFGYEFGMEPGQNPYPHMRSIVVSDSLQLPETSEVTVLKRPGAEGLRAE IARAEGPVYLCGGGAFAGWMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTA TTPYQNGYLLERFLLR" /product="Hypothetical protein yyaP." /transl_table=11 /note=", Bacterial bifunctional deaminase-reductase, C-terminal" /note="Conserved hypothetical protein" CDS complement(190583..191359) /locus_tag="Silicibacter_208" /translation="MQLSLDDPLWDHLPGAHGVEDVRGPLSSLLAEWDPELCNMLLWD RLYHQESLYPATWAALPWLWQIAGRHADAVAPLFDFFAHLLALAKRTPASYCAYEGLP LSGADLGHWHVSAPPAMIPPADALFEALVVWIEPWAVQVCRALNTLIEGADRAQAAHY LRGVTAWEHPEHESFERALGFLADGWSIEEMLETLEADEDVPFHMSARDISFAAQEAA RLQGLCPDLATDIRALVDAVSTDRPETPTQPHPDQKSLFR" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(191474..192829) /locus_tag="Silicibacter_209" /function="COG: Prolyl-tRNA synthetase" /gene="proS" /transl_table=11 /note=", [EC:6.1.1.15] , Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS)., Prolyl-tRNA synthetase, bacterial, tRNA synthetase class II core domain (G, H, P, S and T), proS_fam_II: prolyl-tRNA synthetase" /note="High confidence in function and specificity" /product="prolyl-tRNA synthetase" /translation="MRLSRYFLPVLKETPSEAQVVSHRYMLRAGMIKQSAAGIYSWLP LGYRVLKKIEGIVHEEQMRAGHIPMLMPTIQSADLWRESGRYDAYGEEMLRIRDRHDR DMLFTPTAEELITDIFRANVSSYKDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDG YNFDLTKEDALHAYNRHLVTYLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGE SEVFYDSEITDLTFGAREIDYDNVEQCQAVLEEFTSRYARTDETHDEALFNAVPEERR RVARGIEVGQIFYFGTKYSEALGATVQTADGQSVPVHMGSHGIGVSRLLGAIIEASHD DKGIIWPEGVTPFHCGIVNLKQGDDEADAACEQLYAALTAIGLEPLYDDRKERAGGKF ASMDLIGLPWRITVGPRGLKNGVVEVTSRRTGESEEMSPEDAVKKIAAIYANHPTPRG F" /EC_number="6.1.1.15" CDS complement(192900..193025) /locus_tag="Silicibacter_210" /translation="MSCDIFAQSLLNSQNRAASAPARQAQAQVRGLRDAGSGCLA" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 193691..195430 /locus_tag="Silicibacter_211" /function="COG: Signal transduction histidine kinase" /translation="MTRAAKLTPDPYDVQLRELGLVQRQPDSDIDNLTRLAAQVLDAP TALVSVVQRSLDRQFFKSCVGLPELSSVLRQTPLSHSFCQFVQDANQPLIVPDSRNDA QLRDNAAVIDLKMVAYLGVPIHLPDGTPIGALCVIDRVPRQWSSDNLKTLQHLAVAVD NVIALKHARELAAEAERTAKREAEARKTYLAHMSHEIRTPLNGIIGSVDLLLREASRV NLDPREQNDLLRTINRSARNLQHLLNDALDIAKIDAGKLELAPAAFDLHETVDDVMKL FSAQACEKGVELNHSFRGIEAQEQRYGDRFRLAQILGNLLSNAIKFTDDGSVSLQING TPDALHLTLRDSGCGIAPDRLDKLFLPYTQASADVAQTKGGTGLGLTIVHQMVELMQG RIRAESVPGRGTVFHLYLPLPLTTSAPEAEKVHDPARDGIGDTAPVASPPPAPSNAPL SGKRVLIADDSPANRLVLQKMLENLGATVDKAFDGGDAFGRAVARAYDVLLLDIHMPG QTGTEVVKKLRADPRHQAHDALCIAVTGSTEKQEVEHYLDSGFDAWIGKPLRQSDLMR VLSPLLLEPPSRA" /product="sensor histidine kinase/response regulator" /transl_table=11 /EC_number="2.7.3.-" /note=", Histidine kinase, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /note="High confidence in function and specificity" CDS 195529..196671 /locus_tag="Silicibacter_212" /function="COG: Predicted permease" /translation="MALPARKQLKYWGIAAVLFAVVMWALGNVLMPFILGGAIAYIID PLADRLERAGLSREGATAVITVGAVLIFLILLLLIVPALINQMIDLVQTLPQALSNLR AFAQERFPSLFEDNSQLREALAGLWQIIQDKSVTLLQTFVGSAMSLLNIVVLLVIVPV VAVYLLVDWDRMVARIDELLPRDHAPVVRHLASEIDRVLSSFIRGMGLVCVILGTYYA VALMLVGLNFGLAVGFVAGLVTFIPYLGAIIGGVLAIGLALFQFWGALEGADGEMIRQ GTDWLRIALVAGIFAIGQMVEGNFLTPKLVGNSVGLHPVWLLLALSVFGALFGFVGML VAVPVAAVIGVVARFAVEQYLHSRLYQGLSHRDANVRTSEDTPTDI" /product="membrane protein" /transl_table=11 /note="identified by match to putative ortholog SPO1119 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 196725..197402 /locus_tag="Silicibacter_213" /function="COG: ATPase involved in DNA replication initiation" /translation="MSEQLSFDLPAKPALGRDDFFVAPSNAMAVALIDPAFAWPSGKL VLTGPKGSGKTHLAHVWAKESGARVVPAHALTEADVPELASGPVAIEDVPDIAEDALA QKALFHLHNMVLTHGHRLMLTGRPAPNLWGLGLADLQSRVQAATHAALEAPDDALLAV VLAKLFNDRQITPKPDVIPYLVGRM