LOCUS Silicibacter 4198931 bp dna linear UNK DEFINITION ACCESSION Silicibacter SOURCE unknown ORGANISM . FEATURES Location/Qualifiers source 1..4198931 /organism="unknown" CDS complement(20494..20718) /locus_tag="Silicibacter_67" /translation="MLHKHGLEKGITISYQSISHEVQKNIKRDNIKLSVAEGLQRSLN EAGVPVYTELIHEAYRYRRPRGGARYQLSS" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(56206..58650) /locus_tag="Silicibacter_68" /function="COG: Superfamily I DNA and RNA helicases" /translation="MSTFDEMDAFEGASLSARAMAARPMPYLDGLNPAQRDAVETLDG PVLMLAGAGTGKTKALTTRIVHLLNTNKARTNEILAVTFTNKAAREMKDRVGRMLGQP AEGMPWLGTFHSICVKLLRRHAELVGLKSNFTILDTDDQIRLLKQLIQAAGIDDKRWP ARMLANIIDDWKNRALTPAKVPAGDAAAYNHRGTEFYDQYQTRLKELNAVDFGDLLLH CVEIFQNNPDLLAQYHRWFRYILVDEYQDTNVAQYLWLRLLASGHKNICCVGDDDQSI YGWRGAEVGNILRFEKDFSGAKVIRLEQNYRSTKHILSAASGVIRGNEGRLGKELWTE AEGGEKVRLIGHWDGEEEARWIGEEIEAMQRGTRGMRQYGLNEMAILVRASHQMRAFE DRFLTIGLPYRVIGGPRFYERLEIRDAMAYFRVVISPEDDLAFERIVNTPKRGLGDKA QQTIQTVARANGVSLLEGARLAVEDGLIKGKGGAALRRLVENIARWGQMTRTVLADPD DPDAVVEGVQSFEAFQARTEVSHVELAEIILDESGYTSMWQADKNPDSPGRLENLKEL VKALENFDNLQGFLEHVSLVMDNDKQDAEQKVSIMTLHAAKGLEFPAVFLPGWEDGLF PSQRSMDESGLKGLEEERRLAYVGITRAEKVCTISFAGNRRVFGQWQSQLPSRFIDEL PEEHVDVLTPPGLYGGGFGAAAPSASAVAEPAVRSTIEERMSNADGYNSPGWKRMQAR TAERGYSKPRKSEAQTIDLAATSSFTVGERVFHQKFGYGAVVGIEGDKLEVDFEKAGP KKVVARFVSASDDIPF" /product="DNA helicase II, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1174 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 59221..60672 /locus_tag="Silicibacter_69" /function="COG: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases" /translation="MKPCRRFLIWRMNLSPLRARPLAICCRGFRNWTPPEPACVLHAS SRPSERSLLRSEAPDPIPIESQTAETHPAQMSLCGLPRAKGIDSASVLQMMAGMTLDQ RYPALDDLRAKARTRLPRFVWEYLDSATGREATQARNRLCLDRIGLMPAILGGPQEVD LGTTLFGTPLPRPFGIAPVGMSGLIWPDAEGHLARHAAQTNIPYGLSTVASQSPEDLA PHLGAQGWFQMYPPKDEGIRKDMLERARAAGFKVLVLTVDVPVASRRERQTRSGLTQP PRLTPRLLAQVAIRPAWALGMARQHRGEGGMPHMRTLDKYIEGAASALSSTAHIGYLL RTAPDWAYLEWLRDHWEGPLVVKGVLDACDAPRLEAAGADAIWISNHAGRQFDAAPAP IEVLEDIRAATTLPLILDSGIEGGLDILRALALGADFVMLGRAWHYALAALGAAGPAH LHDILSKDLTANMGQLGIRTLAEVRDLKRLSLD" /product="FMN-dependent alpha-hydroxy acid dehydrogenase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO1172 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(60815..61249) /locus_tag="Silicibacter_70" /translation="MHRFVYVSTAKQDLTAQQIADIAGACHRNNRRAGLTGMLVAHQG RFLHILEGDEAAIRRRAEKIQHDPRHGDFKVLQAREIQMRAFLDWVFVHETPAALPLF GGVKVQPLRALLPINSPLRGRDLTVRHLVRDFLASFKQLLAA" /product="Hypothetical protein ycgF." /transl_table=11 /note=", BLUF, Sensors of blue-light using FAD" /note="Conserved hypothetical protein" CDS 61688..65128 /locus_tag="Silicibacter_71" /function="COG: Pyruvate carboxylase" /gene="pyc" /transl_table=11 /note="identified by match to putative ortholog SPO1171 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="pyruvate carboxylase" /translation="MTEFNKILIANRGEIAIRVMRAANEMGKRTVAVYAEEDKLGLHR FKADEAYRIGEGLGPVAAYLSIDEIIRVAKECGADAIHPGYGLLSENPDFVDACARNG ITFIGPKAETMRALGDKASARRVAIEAGVPVIPATEVLGDDMDAIRKEAAEVGYPLML KASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGEGYLEKMITRARHVEVQILG DKHGEIYHLYERDCSVQRRNQKVVERAPAPYLTDAQRAEICDLGRKICQHVNYECAGT VEFLMDMETEKFYFIEVNPRVQVEHTVTEEVTGIDIVQAQILIAEGKTLAEATGKASQ EEISLNGHALQTRVTTEDPLNNFIPDYGRITAYRSATGMGIRLDGGTAYAGGVITRYY DSLLTKVTAKAPTPEKAIARMDRALREFRVRGVSTNIAFVENLLKHPTFLNNEYTTKF IDETPELFQFAKRRDRGTKVLTYIADISVNGHPETEGRAAPAADLKEPRAPRADTGNL PYGTRNLLEQKGAKAVADWMKAQRQLLLTDTTMRDGHQSLLATRMRSIDMIKVAPAYA QNLSQLFSVECWGGATFDVAYRFLQECPWQRLRDLREAMPNLMTQMLLRASNGVGYTN YPDNVVQFFVKEAAKGIDVFRVFDSLNWVENMRVAMDAVVESGKICEGTICYTGDILD PARAKYDVKYYVGMAKELEAAGAHVLGLKDMAGLLKPASAKLLIKALKEEVGLPIHFH THDTSGIAGATILAAADAGVDAVDAAMDAFSGGTSQPCLGSIVEALKNTDRDTGLDIG NIREISEYWEQVRAQYAAFESGLQAPASEVYLHEMPGGQFTNLKAQARSLGLEERWHE VAQTYADVNQMFGDIVKVTPSSKVVGDMALMMVSQGLTRAQVEDPKSEVSFPDSVVDM MRGNLGQPPGGFPESIVKKVLKGEAPNVERPGAHLEPVDIESTRAELSKELEGFKVDD EDLNGYLMYPKVFLDYMGRHRQYGPVRALPTKTFFYGMEPGDEITAEIDPGKTLEIRL QAIGETDEKGEVKVFFELNGQPRVIRVPNRLVKSSTTQRPKAEVGNINHIGAPMPGVV ASIGVQVGQQVHEGDLLLTIEAMKMETGLHAERDAVVKAVHVQPGGQIDAKDLLVELE " /EC_number="6.4.1.1" CDS 65200..66108 /locus_tag="Silicibacter_72" /translation="MSEETTGQLPDVLWHYTTFDTLTAILTSQCLLASDFRDTNDREE ILFGFKALRDAFGTHNTWNTTEGFADPVSAAIRENEERIIEDLESSFLHGQMICLSSA RDSLSMWRGYGQLTNGGGNGAVAIGFCAADLQTFCGPSDATLQSSTAHIQQNASGGFE GPSNVDYAFRNFPQLSNALSNEDYSADFHLKWTHYLAHWMKHRKHPAFAEEREYRIWG HAYDGNDKGNSQHVVFVGNHDRRKFHLAPAPDDILGPLTHPLAIQKIMVGPKTDFAKV ERFTRNVFQSYTHDRPDMCASKIPFK" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="unique to TM1040, belas" /note="Hypothetical protein" CDS complement(66109..66594) /locus_tag="Silicibacter_73" /function="COG: Acetyltransferases, including N-acetylases of ribosomal proteins" /translation="MRQPHRPVIRFVRLSEIDPQEITAHMSDPLMAEHMPLLEGVEWN AAQTEQFVAAKEACWARDGLGHWGILSDDAYIGWGGFQKEDEEWDFGLVLRHSAFGRG IQVAKAALAVAAQDTRIPFVTFLLPPSRRHLGALRRLGAERLPDVEHAGRPFMKFRLV L" /product="hypothetical protein" /transl_table=11 /note="Hypothetical protein" tRNA 66886..66957 /locus_tag="Silicibacter_30" /gene="Silicibacter_30" /description="RNA" /note="Created by Search for RNAs Autoannotator" tRNA 67152..67223 /locus_tag="Silicibacter_2" /gene="Silicibacter_2" /description="RNA" /note="Created by Search for RNAs Autoannotator" tRNA 67405..67476 /locus_tag="Silicibacter_18" /gene="Silicibacter_18" /description="RNA" /note="Created by Search for RNAs Autoannotator" CDS 67642..68994 /locus_tag="Silicibacter_74" /function="COG: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase" /translation="MASVIYPTTNFTATEQLCITHGEGIYVYDDTGKQYIEGLAGLWC TSLGYSNTEVVEAITEQLKRLPFQHTFGGKTHAPVMELAEKLKAMVPVEDAYFFFGNS GSDANDSHYKMLRYYFNAIGKPHKRKIITRERGYHGVTVAAGSLTSLPANLAHFDAPL EALSILRTDAPHYYTGRQGNETEAQFVERILQNLEDQILAEDPDTIAAMIIEPITGAS GVIVPPEGYYEGLQALLRKHGILIWADEVICGFGRTGADFGCTTMGIKPDLMTFAKQL SSAYFPISASVIPGWMYKAMVDQTNEVGVFGHGYTYSGHPAACAAALKTLEIYERDKI FDHAAEVGTYLQEQLRATFTDHPLVGEVRGKGLIAALELVSNKTTGATIAGGKGGAAA VKACQTEGVILRAVAGNALAFCPPLIITKPEVDEMLKRTKAGVDAAYEALRSEGLLNS " /product="aminotransferase, class III family" /transl_table=11 /note="identified by match to putative ortholog SPO1166 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 69201..70166 /locus_tag="Silicibacter_75" /function="COG: Imidazoleglycerol-phosphate dehydratase" /gene="hisB" /transl_table=11 /note="identified by match to putative ortholog SPO1163 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="imidazoleglycerol-phosphate dehydratase" /translation="MVVDVFSHILAGGDIELHQQIIFATGGVEFRVDFMQRNILGHLI GGAGFAADLDKDTGGHFSPQLLSGLVGLQPRMWRKKGQSRQIQRRTVRGRSRHHIPPT IGAAPLSLSTSQPYKPSQQIEDFAMRTAQVSRSTAETEISVSVNLDGSGTYDNQTGVG FFDHMLDQLSRHSLIDMTIRAKGDYHIDDHHTVEDTGIALGQALVQALGDKKGINRYG ECHLPMDDAQVRAALDLSARPFLVWNVDLPTQKIGSFDTELVREFFQALATHGGITLH IDQIHGVNSHHIAEAAFKAVARALRTAVEVDPRKADAVPSTKGAL" /EC_number="4.2.1.19" CDS 70273..70911 /locus_tag="Silicibacter_76" /function="COG: Glutamine amidotransferase" /gene="hisH" /transl_table=11 /note="identified by match to putative ortholog SPO1162 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="imidazole glycerol phosphate synthase, glutamine amidotransferase subunit" /translation="MLTAIIDYESGNLHSAEKAFQRMATEVGAGDVVVTSDADVVARA DRLVLPGDGAFPACAAELRGHKGIYDAMVEAVEVKGRPFLGICVGMQLMATTGHEYED TPGLGWVDGDVVKITPAEAHLKVPHMGWNDLVINHPHPVFDGISTGDHCYFVHSYHFR VANPNERLAHVDYAGDVTAVIGRDTMLGMQFHPEKSQHVGLKMIGNFLTWKP" /EC_number="2.4.2.-" CDS complement(71165..71896) /locus_tag="Silicibacter_77" /function="COG: AraC-type DNA-binding domain-containing proteins" /translation="MDRLTTLIDRFRMRVVLAARGAGNLCVMQPEAGRQILVFTPEGW VEDTGAEGVGLALRVDWDGAHNPLVAALPQRVEVDLAEAPALASVLALLRQEREAHRC GAQSVVSSLGQVLMVRLLRHLIEAGTAAPGLLAGLADPRLARAIVAMHDAPGRSWTTS DLAQEAGLSLSRFSELFSAQMNETPMGYLRRWRLTLARQDLIRGDRVEAVARRYAYDS PEGFARAFRKFYGVAPVSLRQSTAA" /product="transcriptional regulator, AraC family" /transl_table=11 /note="identified by match to putative ortholog SPO1161 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 72076..72612 /locus_tag="Silicibacter_78" /function="COG: Peroxiredoxin" /translation="MLIPRQKTPDLTLPLLGGGQFDLASEASERGTVICFYRGLHCPI CANYLKEFEKRVADFAERGVKTIAISSDGEERTRQMAEKIEAENLRFAYDLPLSVAKD WGLYISTSRGKTSIGIEEPALFAEPGLFMVTPEQTLYYGSVQTMPFVRPHFSELVAAL DFAIANSYPARGEYTGAV" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1160 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 72730..72981 /locus_tag="Silicibacter_79" /translation="MYLRFEKFSHRDGQHRYLVLSLTPTLFGDWCVIQSTGPIGQPGG QERRNYCPTLGEAETLFESTRERQVKRGFVPIPVQMGLF" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(73032..73421) /locus_tag="Silicibacter_80" /function="COG: Uncharacterized protein conserved in bacteria" /translation="MKQILASIALIVGMSTAAFAADPIEGTWKTQPDDGSYAHIAMKP CGAALCGTIARTFNDGGEYSSPNLGKTLVMDMVPQGGGAYEGKVWRPSNDKIYIGKMD LNGNSLRLRGCVAGGLICSKQTWTRVK" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1159 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 73733..74455 /locus_tag="Silicibacter_81" /function="COG: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase" /gene="hisA" /transl_table=11 /note="identified by match to putative ortholog SPO1158 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase" /translation="MILYPAIDLKDGQAVRLLHGDMDKTTVFNDNPAAQALEFVAAGC EWLHLVDLNGAFAGEPVNAAPVEEILRQCKVPAQLGGGIRDMATIERWLDKGLARVIL GTVAVENPDLVREAARAFPGKVAVGIDARNGKVATKGWAEETDVEVTDLAKSFEDAGV AAIIYTDIMRDGAMKGPNIDATAALANAVSIPVIASGGVSSLEDLHALKSCGAALNGA ISGRALYDGAIDLAEALAVLKG" /EC_number="5.3.1.16" CDS 74595..75269 /locus_tag="Silicibacter_82" /function="COG: SAM-dependent methyltransferases" /translation="MPDGGSTARAAHRYCGPEPQHRRLPMSDKQTMAVYAKAAEDYAK GFARTKDTVHDRDYATFVAGLPDGGTVLDLGCGPGHWAARFRDEGLHVTAMDASPEMA RYAKDTYGIDVTVATFEDIDTTAHYDGIWAFFSLLHAPRTDFPGHLLRLHRALKPGGM LALGMKLGTGERRDTLGRFYTYYSEDALRALLAEAGFEVLGARCANSKGLAGARETFV VLTAHA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3211 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 75262..75735 /locus_tag="Silicibacter_83" /function="COG: Ribonuclease HI" /gene="rnhA" /translation="MPDLFAYTDGACSGNPGPGGWGALLRAMDGETVLKERELKGGEK ETTNNRMELLAAIHALESLARPSKITVVTDSAYVKNGVTGWIFGWKKNGWKTSAKKPV KNVELWQRLDAAQSRHDVTWEWVKGHAGHPENERADELARAGMAPFKSSGKSSKG" /product="ribonuclease HI" /transl_table=11 /note="identified by match to putative ortholog SPO3212 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 75849..76472 /locus_tag="Silicibacter_84" /function="COG: Predicted membrane protein" /translation="MTILTLLDYASVIVFAASGAMVASRAQLDIVGFAFIACLTAVGG GTVRDLLLDRHPIFWVGDPMPILLASGVAVLVFFTAHLVESRLRWVIWLDTFALAIAV PAGTGAALELGYGPVIIVLMGMATGSLGGLMRDVVCNEVPLVLKQGELYISCAMAGAS TAAILVWLGLPSGTALLACAGTTWVTRAGSLAFGWHLPVYKPRPPRQ" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3213 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(76526..76762) /locus_tag="Silicibacter_85" /translation="MSVVFLIIVGAAAGFIATRLMRIEADLITTIVIGIAGALIGGLV LRTLLAVMGLFAGLVGAILGAVALIFLWQKLQNR" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="unique to TM1040, belas" /note="Hypothetical protein" CDS complement(76844..77080) /locus_tag="Silicibacter_86" /translation="MMLALFGTVVIAGIIGYAAERSGFTQNGVIQSIIICVGGAFLFF FLRLMFGIGFNAPGWNAVVSSIGALIIVPFHWRR" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3215 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(77077..78090) /locus_tag="Silicibacter_87" /function="COG: Methionyl-tRNA formyltransferase" /gene="fmt" /transl_table=11 /note="identified by match to putative ortholog SPO3216 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="methionyl-tRNA formyltransferase" /translation="MARKRVRSGRGVHPALSLRRNGLRHKDSDMRVIFMGTPEFSVPV LDALVEAGHEIAAVYCQPPRPAGRGKKDRPTPVHARAEALGLEVRHPVSLKGSEEQQA FAALNADVAVVVAYGLILPQAVLDAPRAGCLNIHASLLPRWRGAAPIHRAIMAGDTHT GICIMQMEAGLDTGPVLLRKETEIGGEETTAALHDRLSLMGARMIVDALATLPDLKAE PQPEAGVTYASKIDKAEAQIDWSVAAEEVDRKIRGLSPFPGAWFEVDGQRLKVLASRL AEGTGAVGTVLDDKLTVACGSGAVELLRLQRAGKAAQDREVFLRGFTLAKGTNLLTAQ DAE" /EC_number="2.1.2.9" CDS complement(78160..78657) /locus_tag="Silicibacter_88" /function="COG: N-formylmethionyl-tRNA deformylase" /gene="def-1" /transl_table=11 /note="identified by match to putative ortholog SPO3217 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="peptide deformylase" /translation="MTTRTCLPWPDKRLRTKAAEVTEITDEIRAIWVDMIDTMEAMPG VGLAAPQIGVMLRLAVVDGSSERGRAVRLANPEILHASIELREHEEASPNLPGVSAKI KRPRAVTVRFLNEDGVIDRRDFVGIEATSVQHQIDHLNGKMYFDHLSKVKRDMLVKKA RKLAR" /EC_number="3.5.1.88" CDS complement(78654..79163) /locus_tag="Silicibacter_89" /function="COG: N-formylmethionyl-tRNA deformylase" /gene="def-2" /transl_table=11 /note="identified by match to putative ortholog SPO3218 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="peptide deformylase" /translation="MSLLPIVQWPDPRLSTACAPVGAAEDLGTLIDDVLETMYAAPGR GLAAPQVGVLKRVFVMDVDWKEGPRNPVVMIYPEVLWRSDDTTLAKEACLSIPGLSTR ITRPTKIRIRWQDADRAAQEQTFDGFAARCIQHEYDHLDGRVTFDHFSSEERRLLEAQ YLSQNEATA" /EC_number="3.5.1.88" CDS complement(79160..79684) /locus_tag="Silicibacter_90" /function="COG: N-formylmethionyl-tRNA deformylase" /gene="def-3" /transl_table=11 /note="identified by match to putative ortholog SPO3219 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="peptide deformylase" /translation="MKRSILIHPDPRLKKIATDVPDLSDDLRALADDMLETMYAAPGI GLAAPQIGVLDRLIVMDCVKEGEGDARPLVMFNPRVIASSDETNVYEEGCLSIPEQYA EVTRPKVVDVEWMDRDGNLQTETFDGLWATCVQHEIDHLDGKLFIDYLKPLKRQMITR KMQKLKRERARGTA" /EC_number="3.5.1.88" CDS 79843..81015 /locus_tag="Silicibacter_91" /function="COG: Aspartate/tyrosine/aromatic aminotransferase" /translation="MDFDKIIDRRGTHCAKWDMMEPLYGVTPEDGLAMWVADTDFPVP EAVSAKMREMADHGIYGYVNCEAQYKSAIQWWMESRHGWSVDADAIFTTTGLVNGVGM CLDTFTQPGDGIVLFTPVYHAFAKVIRLAGREVVECPMVQEDGAYKMDFDAYDAQMTG KEKMVILCSPHNPGGRVWTQDELTQVAAFCKRHDLMLISDEIHHDLVFGGRKHLPMAV AAPEISERLIMLTAPSKTFNFAGLHTGQVIIPDETLREQFRRRMMAIYLQGNTAGEFA TIAAYSPDGAAYVEELVPYIEANKRLFDEAVNAIPGLQSMELQSTYLAWVDFSGTGME REEFTRRVEQGARIAANHGTTFGTGGESFLRFNLGTQRARVEEACERLAKAFSDLQ" /product="aminotransferase, classes I and II" /transl_table=11 /note="identified by match to putative ortholog SPO3220 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(81128..81496) /locus_tag="Silicibacter_92" /translation="MTTYVPKSVQEALDKARIQGMKKKNRLRVHVGEEIYPVLRLWDR GFAVEEGAIPQLRGLVDLYEGTRHLSQCLIVAADAEAGEMRYEFKRATAAADSAPLDF YRAPDAPMGLLGHEQHIGDN" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3221 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 81737..82711 /locus_tag="Silicibacter_93" /function="COG: Predicted glutathione S-transferase" /translation="MGLLVDGKWEDVWYDTKSHGGAFKRSEAQFRNWLTADGSPGPDG QTGFKAENGRYHLYVSYACPWAHRTLIFRKLKGLEDHISVSVVHPDMLDKGWEFKTDA DGATGDALFGFDYMHQIYTKADPSYSGRVTVPVLWDKQENTIVSNESAEIIRMFNSAF DEITGNTLDFWPEELREPIETVNKRIYDTVNNGVYKSGFATSQEAYDAAVVPLFDSLD WLEDILSQHRYLMGEHLTEADWRLFTTLVRFDPVYHLHFKCNRRRIIDYPNLWAYTRE LYQMPGVAETVVMPHIVRHYHYSHDTINPNRILPINPVLDWEAPHGRG" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3222 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 82805..83800 /locus_tag="Silicibacter_94" /function="COG: Aspartate/tyrosine/aromatic aminotransferase" /gene="cobC" /translation="MAERSSFAATQDPAQASVSGSPRDHGGNLAAAIAQYGGSREDWI DLSTGINPAPYPLPPLLAEDWTALPDQDAQQALTDAARRFWQVPDSAEILAAPGASAL IARLPVLRPARSVQITTPTYNEHAAAFDNCGWQVLEVGPTDAQVVVHPNNPDGRLWLP EELKAPFCIIDESFCDICPERSLINRAAQPGTVVLKSFGKFWGLAGLRLGFAIGDPEL IAGLRAAMGPWAVSGPALRVGTHALNDQNWAEASRLELADGASRLDQLMQHAGAQTVG GTDLFRLYDVEDARAWQERLARAHIWSRIFPYSTRFLRLGLPPADRWSQLETALT" /product="cobalamin biosynthetic protein CobC" /transl_table=11 /note="identified by match to putative ortholog SPO3224 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 83797..84708 /locus_tag="Silicibacter_95" /function="COG: Cobalamin biosynthesis protein CobD/CbiB" /gene="cobD" /translation="MSTAALLIPAMILDAAFGEPKWLWSRLPHPAVLMGKLVQALDDR LNEGDGRQVKGVIAVAVLVFVGLLLGWILSWFGSLVSVLIAAILIAQRSLIDHVRAVA TGLQNDLDAGRSAVAMIVSRDTATMTGPQIARSAIESGAENFSDGVIAPAFWFLVAGL PGLLIYKLINTADSMIGYRTEAYEDFGWAAARLDDVLNILPARLSALLIALVTGRAGD WGEISADARKHRSPNAGWPEAAMARALGVALAGPRSYDGEMRPFAWVNASGSKSASAH SITRCCEVLWKSWGLALVLVVALGLLF" /product="cobalamin biosynthesis protein CobD" /transl_table=11 /note="identified by match to putative ortholog SPO3225 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 84751..85947 /locus_tag="Silicibacter_96" /function="COG: Membrane-bound lytic murein transglycosylase B" /translation="MRVLPSPNAVLHRIALITLLSAPSLAAAQCGGNFQNFVRGLKDE AVSAGYAINTVNEFFNGVSQDQKVLRADRSQGVFQKPFIEFSRRLISQDRLNRGRRKG EEFDKIFERIETTYGINRGVLLAFWAFETDYGAFQGDFNTRNALVTLAHDCRRPELFR PQIFSALELYRKGDFDPERTTGAWAGEIGMVQMLPGDILEHGVDADGDGHVTLKTSAA DALMSAARMLSHLGWRANEPWLQEVEIPAGMDVSASGPAYKQSVAEWSAMGVAPRSGG FAMKEAQASLLLPQGHNGPAFLAYPNFDIYFEWNQSFTYVLTAAYFATRLEGAQVYDA GNPDQGLSGDQMKELQRRLQARGHDVGDVDGILGANTRLAVQKEQLRLGMPADAWPTP ALLNAL" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3226 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(86008..89463) /locus_tag="Silicibacter_97" /function="COG: Chromosome segregation ATPases" /translation="MRFSKLRLNGFKSFVDPTDLIIADGLTGVVGPNGCGKSNLLEAL RWVMGETRAKAMRGGGMEDVIFAGTATRPARNFAEVSLQIDNSERLAPSGFNDSDQLD IVRRITRDVGSAYKANAKDVRARDVQMLFADASTGAHSPALVRQGQISELINAKPKAR RRVLEEAAGISGLYQRRHEAELKLKNTEQNLLRVDDVIEQLATQLGQLSRQAKQAQRY REIGEKLRLAEGMLLYRRWREADEARLLAEEELRTRVTQAAKAEGSARLAAEKRAEAE EGLPPLREEEAIAAAVLQRLMVQRDALWDQDAQARQNIEHLNNRILQLGKDIERESGL NRDAGETIDRLEWEKRELAKAGEGHDDRMAEAAEIAQESTSILHNGEEHLSQVTEDVA RLAARHQSAQRLVEDCRRALERAQGEGAKSRSAQSAAQEALAASEAAYEAAVEAEEEA REAAEMAEEALAEADELRTETQAHETDARAKRSEAEGELGALRAEVTALAKLVERDTA EGGQVMDDLRVTPGYEKALGAALADDLRAPLADQDGPTGWLTLPSYQRDAPLPDGVEP LGKYVDGPDALWRRIAQIGVVDADEAARLQPLLQPGQRLVTLEGDLWRWDGFRSWAED APSAAAMRLEQMNRLEALKQDMAHATARTEGAQAAHEALVRKLEEVTRADQAARQARR VADQRVADSARALSRAEAERNLAEGKLENFGIAVARHEEDALTASLQLKEAENAQTAL EDLAEARAKVEDIKHRVEAARITMLTHRSALDELRREGEARTKRAQTVAKELSGWRLR LESAGKRIAELEERRETSQEELEDAMAVPGEIAETREELNEQISDAEARKAEATDALV AAEAVLREAVHHERESERLASEAREARARSEARSEAARETVDATAERIDEVMHLQPAE LLEQLQVAPEDMPDAETLEVEVARHKRQRDALGAVNLRAEEDAREVQSEHDALVTEKQ DLEEAVKTLRSGIASLNREGRERLLTAFEQVNSSFAMLFTHLFGGGEANLLMVESDDP LDAGLEIMCQPPGKKLSTLSLLSGGEQTLTAMALIFAVFLSNPAPICVLDEVDAPLDD ANVTRFCDLLDEMCRQTDTRFLIITHHAVTMARMDRLFGVTMQEKGVSQLVSVDLKKA EAMVA" /product="SMC protein" /transl_table=11 /note="identified by match to putative ortholog SPO3228 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(89593..90807) /locus_tag="Silicibacter_98" /function="COG: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs" /translation="MALSAQFASRIGRMKASEIRELLKLLDQPGMLSFAGGIPDPALF PAEAFAEAFQNALSPAHQAQSLQYSVSEGYLPLREWLATYMSKLGVTCGPEHILITSG SQQALDYLGKLFLSPGDTALVGWPTYLGALAAFNAYEPRYDRLRAGENQPTAHYAEAA KAAGGRVKFAYLSPDFANPTGETMTRAERLQVLATAEALDAAVIEDAAYQDLRFDGAA VPPILTLELERNGGDIESCRTIYCGTFSKTLSPGLRVGWLVAATPVVQQLVLMKQASD LHSPTINQIATCQVAEQLFDAHVDTLRSVYGRRRDAMLAALEAHMPEGVIWTKPEGGM FIWVTLPEGMSGAELLEYALSREKVAFVPGQAFYADATGRNTLRLSFSNSNEATIEEG VARLGRVIRSMV" /product="aminotransferase, classes I and II" /transl_table=11 /note="identified by match to putative ortholog SPO3230 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 90962..91729 /locus_tag="Silicibacter_99" /function="COG: Transcriptional regulators" /gene="pdhR" /translation="MPFQKVQPEKLSSAVVRQIEKLILRGILRPGERLPSERELSERL GVSRPSLREALGELQEQGLLCSRAGSGVFVADVLGSAFSPALIQLFASDDEAVFDYLS FRRDLEGMAAERAAKFGSDADLGVIQTIFDKMEAAGDPSVSEAAAELDAQFHSAILEA SHNVVLLHMMRSMFDMLRKGVFYNRRIMFGQHTTYEALLEQHRAINSALQSRDAKAAR AAVETHMDYVKQSLEEQIRAERNAEIAAQRLEHESKR" /product="pyruvate dehydrogenase complex repressor" /transl_table=11 /note="identified by match to putative ortholog SPO3231 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(91726..92547) /locus_tag="Silicibacter_100" /function="COG: ABC-type oligopeptide transport system, ATPase component" /gene="pstB" /transl_table=11 /note=", [EC:3.6.3.27] , Phosphate import ATP-binding protein pstB (EC 3.6.3.27) (Phosphate- transporting ATPase) (ABC phosphate transporter)., ABC transporter related, ABC transporter, 3a0107s01c2: phosphate ABC transporter, ATP-binding protein" /note="High confidence in function and specificity" /product="phosphate ABC transporter, ATP-binding protein" /translation="MFHSLPLLRKPSQIAEDVTPGPTVLRLQDFGLEAGGVQLLSGVT FDLRIGEALGLIGRAGAGKSLLMRAICRLLEQERQVVTRGSLQHRGQEIFGRGFDTPE MRAKVVYIPEVANPFPMSVWDNIAYGVKLNRIATRRREMADHVEAALRRCRLWDELKD VLHTQRATALPPYQQRLLCLARSLALNPDVVMLDQPTGSIDQQENESLHDIAMDLKTD HAVVFATASLADTARLADRVAYLEEGALVEIDSAEMILTAALAPQTRAFLESTSA" /EC_number="3.6.3.27" CDS complement(92787..93344) /locus_tag="Silicibacter_101" /function="COG: F0F1-type ATP synthase, subunit b" /gene="atpF" /transl_table=11 /note="identified by match to putative ortholog SPO3233 from Silicibacter pomeroyi DSS-3" /note="Specificity unclear" /product="ATP synthase F0, B subunit" /translation="MRATLAIALTLATTSPAFAAGGGWNLGNTDFVVILAFLLFIGIL LAAKVPSLIGKQLDNRADSIKSELEEARALREEAQTLLASYERKQQDVQAQAERIVAN ARDEAAAAAEQAKADLAASIARRLTAAEEQIASAEASAVKEVRDRAITIAVEVADQVI SKQMTAADANKLIDAAIQDVEAKLH" /EC_number="3.6.3.14" CDS complement(93347..93892) /locus_tag="Silicibacter_102" /function="COG: F0F1-type ATP synthase, subunit b" /translation="MATTTHDAGHGAAEAAHGSSGMPQLDFSTYGNQIFWLLVTLVVI YLILSRIALPRIAAILNERQGTITNDLAAAEDLKAKAVEAENAYNKALADARAEAQRI AAETRAEIQAEVDEAIAKADAEISAKAAESEKAIAEIRAGALESVKVVAADTASALVA ALGGKDDADAVKAAVAERTEG" /product="ATP synthase F0, B' subunit" /transl_table=11 /EC_number="3.6.3.14" /note="identified by match to putative ortholog SPO3234 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(93979..94203) /locus_tag="Silicibacter_103" /gene="atpE" /translation="MEGDLAYIGAGLAGMGTGIAALGVGNVAANFLAGALRNPSAAAS QTATLFIGIAFAEALGIFSFLVALLLMFAV" /product="ATP synthase F0, C subunit" /transl_table=11 /EC_number="3.6.3.14" /note="identified by match to putative ortholog SPO3235 from Silicibacter pomeroyi DSS-3" /note="Specificity unclear" CDS complement(94260..95063) /locus_tag="Silicibacter_104" /function="COG: F0F1-type ATP synthase, subunit a" /gene="atpB" /transl_table=11 /note="identified by match to putative ortholog SPO3236 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ATP synthase F0, A subunit" /translation="MGKLFFYVALALVLVSGLVFAPEKAELAIHPMDQFTVTPLFGGD HIAWYTPTNVTLWMFLAVAAIIGLLVFGSSNRGIVPSRAQSVAELAYGFIYKMVEDVT GKDAVKFFPYIMTLFMFIVTANFLGLIPMSFTTTSHFAVTAILAMLVFVTVTITGFVL HGAKFLGLFWVSSAPLALRPILAIIELISYFVRPVSHCIRLAGNVMAGHAVLKVFAGF AGALGAGAFLPIFAITAVYALEVLVAFIQAYVFTILTCVYLKDALHPSH" /EC_number="3.6.3.14" CDS complement(95103..95444) /locus_tag="Silicibacter_105" /gene="atpI" /translation="MIDDDQKQRMAQLEEKLAAAKKAHEEPEPRADEHYSMANQAWRM VTELVAGLVIGLGIGYGLDVLLGTTPIFMVLFILLGLAAGVNVMLRSAREIQDKQMAE AEQRADADKDA" /product="ATP synthase F0, subunit I" /transl_table=11 /EC_number="3.6.3.14" /note="identified by match to putative ortholog SPO3237 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(95654..96541) /locus_tag="Silicibacter_106" /function="COG: Permeases of the drug/metabolite transporter (DMT) superfamily" /translation="MALRYWAVIVILGIGWGMSFMFNAVLLRELAPLWVSVGRVGLGA LGCWMFLLARGRDWRISPARALALAGFGALSYAIPFSFYAIGQQHIASGVAGIVNACT PALAVVVTHFWPGGERANWRKSLGVGAGLAGIVILSLPILQSGQSSAIWAVFVTLGAP LCYAFSVNVARQFRDMEPVVLVAWALSGATAFILPVAFWVEGAPQALTAQAWGALLVI GFALTSAAFIAMYWVLPKVGPTNVTLPTLIAPASALTLGVLVLGEPLEISHLTGLSAI LFGLLLIDGRLFKSRVPAV" /product="Hypothetical transport protein yoaV." /transl_table=11 /note=", Protein of unknown function DUF6, Integral membrane protein DUF6" /note="Conserved hypothetical protein" CDS 96641..96970 /locus_tag="Silicibacter_107" /function="COG: Predicted transcriptional regulators" /translation="MNDTLDTVFAALADPTRRAILSMLLEDDMAVTDVAEPFEMSLAA ISKHLTILTRAGLIQQEKRGRVKWCKLQPDALRAASVWMQGFGQFEPVNLDAFERFLE EELRDGE" /product="transcriptional regulator, ArsR family" /transl_table=11 /note="identified by match to putative ortholog SPO3238 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(97013..97924) /locus_tag="Silicibacter_108" /function="COG: Permeases of the drug/metabolite transporter (DMT) superfamily" /translation="MELATRPRGLRDSHKGHLAMLAFSALVAGSFSLGALIANEVTPA ALNAVRFVLAGILIGAAAALGPGLKPQQFEAPWRYVLLGGVFATYFVLMFYGLQTADP VSAAAVFTLTPAMSGVFGWLLLRQITTPRMALALVIGGAGALWVIFRADMEAVLKFEI GQGEMIYFVGCVAHALYTPMVRKLNRGEPALVFTFGVLVAGAILLVALAWRDLAATDW AGLKPIVWIGLLYVSVFASACTFVLLQVATLRLPSAKVMAYTYLVPSWVILWEIALGK GWPPALIFGGIGLTIVALWLLLKDEHG" /product="integral membrane protein" /transl_table=11 /note="identified by match to putative ortholog SPO3239 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(97933..98811) /locus_tag="Silicibacter_109" /function="COG: Transcriptional regulator" /translation="MENWDEVRTAYQVARLGTVSGAADVLGVHHATVIRHIDAIEARL GVKLFQRHARGYTATEAGLDLLRVAQATDDQFSQLVGRLKGQGDEVSGELVVTSLSSM APMLAPALAEFQQLHPDLVIRYLTGDRLFRLEYGEAHVALRAGAAPEQPDNVVQPFVA QRLALYASREYVERHGMLKGQDDMVNHRFIASDNENTRAPFERWLRSTIPAENIVFRC SDAVAGHQAIRAGAGIGFVSLWEAASSPDLVMMMDPHDEWSGKIWLVTHVDLHRTNKV QSFVRFLKEHAKSWPQ" /product="transcriptional regulator, LysR family" /transl_table=11 /note="identified by match to putative ortholog SPO3240 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 98952..99533 /locus_tag="Silicibacter_110" /function="COG: Acyl carrier protein phosphodiesterase" /translation="MTQTVLHIDSSARKTGSISRDLTAQVVARLGAETVLHRDLSTPL PLLDETWIGANFTAPEERTESQKDVLALSDQLIQEIKQADTLVIGVPIYNFAIPTTLK AWIDQIARAGVTFRYTENGPEGLLTGKRAILVVASGGTEAGSDIDYASRYLRHMLGFI GITEVEVVAADQQAIDAEASVQKAKDAIAQLAA" /product="acyl carrier protein phosphodiesterase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO0383 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(99719..100246) /locus_tag="Silicibacter_111" /function="COG: Uncharacterized conserved protein" /translation="MTGKKVLRRRFPISSENLLANFIPGGFPNFCPEHAKLRSVEDAK TVEGALLYWEKQALRLKNLYLRDRKKRNYLVSLEQDRDVALKALGATLGGGGLSLGSA DRLMEFLGVRPGAVTPLAMINGAPKGVRFFMDAQAQHTDSIYMHPLVNTRTLAMPRAD LMVFFERIGVTPEWI" /product="conserved hypothetical protein" /transl_table=11 /note=", YbaK/prolyl-tRNA synthetase associated region" /note="Hypothetical protein" CDS complement(101532..102917) /locus_tag="Silicibacter_112" /function="COG: Cytosine deaminase and related metal-dependent hydrolases" /gene="gda" /transl_table=11 /note=", [EC:3.5.4.3] , Guanine deaminase (EC 3.5.4.3) (Guanase) (Guanine aminase) (Guanine aminohydrolase) (GAH)., Metallo-dependent hydrolase, composite, Amidohydrolase family" /note="High confidence in function and specificity" /product="guanine deaminase" /translation="MRCSQKGRDAGLRWALGLSPSLRKANLMSADAKILRGRTLTFHA EPNGPDDTAAYTCLEDGALLIRDGRIAAHGAYAEVLRAAPEAEVVDHRPHLLMPGFID LHLHFPQVQVVASWGEQLLDWLNTYTFPAEVQFADKTHADRMARAFFDLVLSHGTTTA VAFCSVHPASAEAYFAEAARRNMRMIGGKVMMDRNAPDGLRDTARQGYDETKALIERW HGKGRASYAISPRFAITSTPDQLEMAGALVAEHPDAYVQTHLSENRDEIDFTLSLYPD APDYLGIYERYGLVHDKTLLGHAIHLEPREIDLLAEVGGKPVFCPTSNLFLGSGLFDD GGLRAKGIQNGIATDIGAGTSYSMLQTLNEGYKILQLQNQKLHPLNAFHWITRGNAEV LGQLQEIGTLDVGSEADIVVLDVAATPAMALRAEAATSLSEELFILQMLGDDRAVVET YVAGEAMKPQS" /EC_number="3.5.4.3" CDS complement(102993..104252) /locus_tag="Silicibacter_113" /function="COG: Predicted membrane protein" /translation="MQELVIMWDWLGFAVRWLHVITAIAWIGSSFYFVALDLGLRKVP HLPVGAHGEEWQVHGGGFYHIQKYLVAPANMPDHLIWFKWESYATWLSGAALLMIVYW AGGELYLIDANKADLALWQGILISGASLSVGWLVYDFLCKSPLGEKPTMLMVLLFVLL VAMGYGYNQIFTGRAVMLHLGAFTATIMTANVFFIIMPNQRIVVKDLQEGRTPDAKYG KIAKLRSTHNNYLTLPVIFLMLSNHYPLAFATEYNWLIAALVFLMGVTIRHYFNTRHA GAGNPTWTWPVTILLFIAIMALSQAPLVQDTYEESEARTLTQTELAFAGSEHFEDVMN VVPGRCAMCHAREPYYDGIRRAPKNVLLETPADVAKYARQIYLQAGATHAMPPANVTY MEEDERALIRQWYADGAAELPFYLAGN" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO0869 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 104362..105276 /locus_tag="Silicibacter_114" /function="COG: Transcriptional regulator" /translation="MAYLNNIRTFVRVYELGNMSAAARDMRISAAVASSRISQLEEHL KVRLFQRTTRLLHPTEQGQLFYHGAVKILEAVEEAEADISNVTQTPRGTLYVAAPLGL GQRLIAPAVPQFNAAYPLINIRLRLSDRKLDLAAEGLDAAFFLGLPEDSNLKIRKITD CPRVLCAAPAYLKARGTPTSSAELKTDAHDCLNLRYPGAPEFQWPLHGPDGLRRVAVT GPFESDHGDVLTQWALDGHGIILKPVFEISEHLASGRLVPVLPDEPPATIQMACLYMH RRHQDPKVRLFLDFMVDHILASLPSDAA" /product="transcriptional regulator, LysR family" /transl_table=11 /note="identified by match to putative ortholog SPO0870 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(105349..105705) /locus_tag="Silicibacter_115" /translation="MSGYLTTHVLDTARGCPAEGIEIALYKVSAGAREKVAQTVTNSD GRTDSPILPAERFATGSYELVFFCGDYLRATGQAGEDPLFLDEVPIRFGMSEAESHYH VPLLLSPYGYSTYRGS" /product="transthyretin family protein" /transl_table=11 /note="identified by match to putative ortholog SPO0871 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(105727..105819) /locus_tag="Silicibacter_116" /translation="MMLVRASRAGRAHYGVKFSTKEMAQGRRGR" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 105905..107320 /locus_tag="Silicibacter_117" /function="COG: Predicted xylanase/chitin deacetylase" /translation="MTRYPRDMRGYGATPPHPAWPNGAKIAVQFVLNYEEGGENCTLH GDAASEAFLSDIPGAAQWPGQRHWNMESIYEYGARAGFWRLHRLFTGAGIPLTIYGVA SALARSPEQLKAMKDADWEIASHGLKWVEHKDMAEDDERASIKEAIRLHTEVVGTRPR GWYTGRCSANTVRLVAEEGGFDYISDTYDDDLPYWLEVGARDQLIIPYTLEANDMRFA TAPGWVTGSDFGDYLTDAFDTLYSEGAAGAPKMMTIGLHCRLIGRPGKIAALKRFIDH IQSHPGVWCPRRIDIAEHWATEHPHQRRQRPSQMDRDTFVGAYGSIFEHSPWIADRAF DLELGPAHDCAAGVHNALCRIFRSASEDERLGVLTAHPDLAGKLASAGRLTAESTSEQ ASAGLNLLTDAERETFTALNTAYVEKHGFPFIIAVRDHDKASIMAAFKRRIDNDRAAE FDEACRQVERIAEFRLMDLLP" /product="polysaccharide deacetylase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO0872 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 107317..107823 /locus_tag="Silicibacter_118" /function="COG: Ureidoglycolate hydrolase" /gene="allA" /transl_table=11 /note="identified by match to putative ortholog SPO0873 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="Ureidoglycolate hydrolase" /translation="MSRTLTARPLTAEAFAPYGDLLMPKPEPDKIINQGKCGRHHDLA QLDFADGRAGISLFVSEARHLPYEVELVERHPEGSQAFVPLDGVPMIVIVAPDADGSP GQPEAFLSAPGQSINLHRGTWHGVLAPFQQPGQYIVIDRIGDGANLEEHWFQEPWIVT EISAPAEG" /EC_number="3.5.3.19" CDS 107901..109340 /locus_tag="Silicibacter_119" /function="COG: Xanthine/uracil permeases" /translation="MSDTTIGTPEQLRDPDYMPPLGKAIPLGIQHVLAMFVSNVTPAI IVAGAAGFGFGSNSPDFPELLYLIQMSMLFAGIATLMQTLTLGPVGAKLPIVQGTSFA FLPIMIPLVAGKGVDALAALFGGVLIGGLFHAALGLVIGRIRFALPPLVTGLVVTMIG LALVKVGIQYAAGGVPAIGTPEYGSLLNWSAALVVIVVTLGLKFFTRGMLSVAAVLLG LIVGYIYALMVGMLSFDSIGASWSNAAAFALPQPFKYGFEFSFAAILGFCLMAFVSAV ETVGDVSGITKGGAGREATDKEIEGATFADGFGSALAGAFGAMPNTSFSQNVGLIAMT GVMSRHVVTCGAIFLIICGLIPKVGAVIRTVPIEVLGGGVIVMFGMVVAAGISILSDV DWNRRNMVIFAISLSVGLGLQLEPGALQHMPDTARILLTSGLLPAAVISIALNLILPE ELADESTEEVSGGMSGHSKGSLGTSRDAQ" /product="xanthine/uracil permease family protein" /transl_table=11 /note="identified by match to putative ortholog SPO0874 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(109414..110244) /locus_tag="Silicibacter_120" /function="COG: Uncharacterized protein, possibly involved in glyoxylate utilization" /translation="MTKPTYYAPHGGLPPQTQLLTDRAMFTEAYAVIPKGTNSDIVTS LLPFWEKARFWVIARPLSGFAETFSHYIAEVLPGGGSTRPETEAGVEAVLFVVEGQME LTLDGATHQMREGGYAFVPPASDWSLRNTSDAPVRFHWIRKAYQAVEGLEAPDAFVTN EQEVTPTAMPGTDGKWATSRFVNPEDLRHDMHVTIVTFEPGAVIPFAETHVMEHGLYV LEGKAVYRLNQDWVEVEAGDYMWLRAFCPQACYAGGPGKFRYLLYKDVNRHMPLAPLR " /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO0876 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 110442..111704 /locus_tag="Silicibacter_121" /function="COG: Putative glycerate kinase" /translation="MTQSMQDTALELFHCAIQRADPAAAVAAQLAAEPIAPLAPGGRR IVLAVGKAAVPMMRATLAALAEPPAAALVVTNPENLTDVPGAEVIAGSHPVPDQSSAD AGARVLSLVQTLTAADQLIVLISGGGSALMVAPAPGLSLADKATVNEMLLASGLEINR MNLIRQALSQLKGGGLCRAAAPAEVTALILSDVIGDDLRAIASGPTVAPLGQKADARA LLQAEGLWDALPAAVKTHLETPEDEREMPAAQNVLIGSNRFSLEAMRDHAKALGWHVP DLVDDLTGDVAEAAQRILDTAQTPAPDRPTALLFGGETTVRLSGTGRGGRNQELALRI AQAAKSLAGDWVFLSGGTDGRDGPTDAAGGLVTPDTWAEIARAGADPAALLANNDSYA ALKAADALVTIGGTGTNVADVQILLRRP" /product="MOFRL domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1564 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(111701..112135) /locus_tag="Silicibacter_122" /function="COG: Transcriptional regulators" /translation="MTHALPRTDRSLPIALLRARERVMGPVRQLLNGQDLTEQQWRVL RVVQESGPIDPTQIADQACLLLPSLTRILQKLQEKGLIDRARDETDRRRQVITLTDAG MQVIEANIDDSLALIERTREKMGAEDYEALLDLLRKLNGLDL" /product="transcriptional regulator, MarR family" /transl_table=11 /note="identified by match to putative ortholog SPO3689 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 112264..112659 /locus_tag="Silicibacter_123" /function="COG: 5-carboxymethyl-2-hydroxymuconate isomerase" /gene="hpcD" /transl_table=11 /note="identified by match to putative ortholog SPOA0320 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="5-carboxymethyl-2-hydroxymuconate delta isomerase" /translation="MPHITLDYAPRLAQFVDLPELCDTLRRAAINTGILPMAGVRVRA IAADHISIADGNPDHMYLDISVRLRGGRSLEARKAATQEIFAAARAVLAPVMASHPIA LSLEMRDIDPDLSPKCGSIRDHLSTGDPA" /EC_number="5.3.3.10" CDS 112656..114167 /locus_tag="Silicibacter_124" /function="COG: NAD-dependent aldehyde dehydrogenases" /gene="hpcC" /transl_table=11 /note="identified by match to putative ortholog SPOA0027 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase" /translation="MSDLAVNLDKLAGFLEEYRKSGITNLIGGEARPAASGQTFETTS PVDESVICSVARGGSEDIDAAAQAAKAAFPAWRDLPATERKAILHRIADGIVERAEEI ALCECWDTGQALRFMSKAALRGAENFRFFADRAPSARDGQMLPSPTLMNVTTRVPIGP VGVITPWNTPFMLSTWKIAPALAAGCTVVHKPAEFSPLTARILAEIAHDAGLPPGVWN LVNGLGEEAGKALTEHPDIKAIAFVGESKTGSMIMAQGAPTLKRVHFELGGKNPVVVF DDADLDRALDAAIFMIYSLNGERCTSSSRLLIQDSIAEAFEAKLLARVNSIKVGHPLD PQTEVGPLIHKTHFDKVTSYFDIARHDGATVAAGGSRHGDTGWFVKPTLFTGATNQMT IAREEIFGPVLTAIRFTDEDEALNIANDTQYGLTAYVWTNDVTRAMRFTNQLEAGMIW VNSENVRHLPTPFGGVKASGIGRDGGDWSFEFYMEQKHIGFATGHHKIPRLGA" /EC_number="1.2.1.60" CDS 114266..115246 /locus_tag="Silicibacter_125" /function="COG: Lactoylglutathione lyase and related lyases" /translation="MPIPAANLYPPFNITRLSHVEYGVTDLAASRTFYVDILGLQVTH EDDSRIYLRAMEERGHHCIILRQSDHAGVACLGFKLYDTPDLEKAAAFFEGKSLPVEW IERPFMGPSLRTRDPWGVPLEFYVKMDRLPPIHQQYRLYNGVKPLRIDHFNMFSANVD AAVAFYGEMGFRVTEYTEDDDSGRVWAAWMHRKGGVHDVAFTNGTGPRLHHTAFWVPT PLNIIDLLDLMSTTGYVANIERGPGRHGISNAFFLYVRDPDGHRIEIYCSDYQTCDAD LEPIKWSLTDPQRQTLWGAPAPRSWFEEGSLFDGAETRDSDLKAQPIIAP" /product="extradiol ring-cleavage dioxygenase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3688 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 115324..116736 /locus_tag="Silicibacter_126" /function="COG: Glutamate decarboxylase and related PLP-dependent proteins" /translation="MNWTDFASWGRKVADWAQDYHLTVGERPVRAQTKPGDMLTALPE TPPEQGEGMETIFADFEEKVMPGITHWQHPRFFAYFASNAAAPSVLAEFLTSAIAPQC MLWQTSPAATEMETRMMDWLRQSLGLPSEFRGVIQDSASSATLAAVLTMRERALNWQG NQQGLAGQPTLRIYCSSEVHTSVDRAIWVAGIGQANLVRVPIKGDWRGMDPAALETAI QSDKAAGLQPAGVILCVGGTGTGATDPIADCIKVAQNHGLYTHVDAAWAGSAMICPEF RAYWPGIEGADSIVFNPHKWLGAQFDCSAHFLKNADDLVRTLAISPEYLKTHGHDGII NYSEWSVPLGRRFRALKIWFLIRTYGLEGLRQRIRNHVAWSRQLHDALAQEPDFEIVT PPMWSLWTFRYAPDGATDLDALNLELVNRINDDGRIYLTQTRVDGVLVIRFQAGAFET TEADIMLAHDVITEIARGLT" /product="decarboxylase, pyridoxal-dependent" /transl_table=11 /note="identified by match to putative ortholog SPO3687 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 116736..117593 /locus_tag="Silicibacter_127" /function="COG: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)" /translation="MRFATYTAATETFYGVITDAGAIALSPEFPEWPTLREVIENKGL HTLAQAAKGRDVTHPLDQITYQIPVPRPEKIICVGVNFPNRNAEYKDGQDAPPNMSLF PRFARSFTGANHPLIRPPESPQLDYEGEIAIVIGKGGRRISEADAYDHIAAITLCNEG TIRDWVRHAKFNVTQGKNWDSSGAIGPWLVPFTAPAQLDDVRITTKVNGELRQDDRTS RMLFPIRRQIAYISTFTTLVPGDIIVTGTPTGAGARFDPPKFLKPGDVIEVEGEGIGI LRNAVEDEA" /product="fumarylacetoacetate hydrolase family protein" /transl_table=11 /note="identified by match to putative ortholog SPOA0025 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 117590..118390 /locus_tag="Silicibacter_128" /function="COG: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)" /translation="MTPDQHAEAAAQLLRAEETRQQCGLLSLAYPGMTLEDAYAVQKA LVTQKLAQGRRKIGWKIGLTSRAMQQALNITTPDSGVLLDDMVFENASTVPEGRFIQP RVEAEIAFVMKAPLAGRDCTHDDILKATEYVAPSLEILDTRILRADPATGQARIITDT ISDNAANAGIVMGKAKHAIDAFDLRRVGAILKRDGVVEETGLGAGVLDDPVTSVLWLA RRMADYGQQIEAGDIVLSGSFIRPVECPPGTQIHADFADFGSVEISFS" /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase, putative" /transl_table=11 /note="identified by match to putative ortholog SPOA0024 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 118403..119167 /locus_tag="Silicibacter_129" /function="COG: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase" /translation="MAAPINRFKEALKDGQRQIGCWCSFGEAVTTEVMGTAGFDWLVV DGEHAPNDIRSIRDQLVALATSPAEPVVRVPIGEAWIIKQVLDAGAQTVLVPMVETAE QAAELVRACHYPPHGTRGVGAAGARATRFGTTPDYIATADAQICVLLQVENRKGIENL DHILAVEGIDGIFIGPADLSTDMGHQGNSAHPEVRAVIADAISRIKAAGKAPGILGVT DEATQAYSDMGAQFLAVGLDVLVLAQGARTLAAKWR" /product="HpcH/HpaI aldolase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3686 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(119211..121163) /locus_tag="Silicibacter_130" /function="COG: Predicted metal-dependent hydrolase with the TIM-barrel fold" /translation="MLGTHLKLGLMSLCAATVAMGAAAQDVADTIYTGGPVLTMDDSA PRAEALAVREGRIAAVGSTEAVMALRGESTRVIDLEGATLLPGFVDAHGHVAAIGLQA MAANLLPAPDGRGNSIAELQDILRDFIDAQPERVERFGAVIGFGYDDSQLSELAHPTR HDLDAVAADIPVYIVHQSGHLAVANTAALALAGITAESEEMPGGVIRREADGKTPDGV LEETPHFVALGRILGGLDAEGSIEMVRAGVDLVASYGYTTAQEGRASTGQVQMMQALA AQPDGLKVDVVAYPDILIDRDFILEEQSFDYENGLRVGGAKLTIDGSPQGFTAWRDKP YYAPPPQMRSDYVGYPAASPDQVFDAIDWAYENDVQILTHSNGEAASDLLLAATGAAA EKHGNDDRRSVLIHGQFLREDQVDRIKALDIFPSLFPMHTFYWGDWHRDRTVGPEAAD NISPTGWVLKRGMRFSTHHDAPVAFPDSMRVLDATVTRRSRSGDIIGAAHRVDPMTAL KAMTIWPAWQHFEENTKGSLEVGKLADLVVLSADPTAIDPETIDQIRVLRTIKEDEVV YDASERDEGSLLQWRPVPGRIDTGSEMLRRAALMREIPQDLSGVRRRVALRAGSGPTH GATCVSGYLFATLTPGFERAKDRLIP" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2830 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(121307..121630) /locus_tag="Silicibacter_131" /translation="MTYRDDKTDNEDLAYGQTPWGCASTRKRLDSESMMLLRANLSEP LNRADSWPTLRELLRGKGFDMKRREGRLRLVDLQSRVEICTFGLLGHPRAELEKRFGA PMQAH" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(121799..123442) /locus_tag="Silicibacter_132" /function="COG: ATPases with chaperone activity, ATP-binding subunit" /translation="MRFVLSSVLVGAAALLSTTALAETFTAASRVSAVTVYPSEALMT RTAEVTLPAGRHRIIITGMPFVDEVETLQVTHPGVRRVGLYLRESFPVLEETATPEQA TAEARVAEIEDQIDALRQTAEEARLAAQGAEAAIAFLSALNRGEGAALPDPDQLRALV STVREETSEARETILRAKAQERGFQRQMKDLEAELARAQAELRALSQQDEEQMFLALD VEADEEVTVPLSLSYPNDAVSWGPSYAFNLQTGTSPEVTLRRDVMIQQATGEDWVDVA LRVSTSTPDQRINPHDLRPNRRWIEDEQQAKQRFTSESRVMSAAEPIVEAPIIVEDTG ASFGVVASEAGVSYSFDVPVSLRSGAELAYLTLPDVTFEAEVFAQAVPRRDPTAFRIA RIVNTSGEELLASSTTRYFVDGDLVGSGHFAGLTPDAELDLGFGPIDGLRLKRDLLDQ SEGGRGVISRSNQRDMVAEIEVENLTGQDWPLRVLDLVPFSDQEDLEITWSATPAPSE ENVDKQRGILAWDLDVSAGKTRTISLKTRLSWPEGMVLR" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3713 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(123608..124630) /locus_tag="Silicibacter_133" /function="COG: Aspartate-semialdehyde dehydrogenase" /gene="asd" /transl_table=11 /note="identified by match to putative ortholog SPO3712 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="aspartate-semialdehyde dehydrogenase" /translation="MGYRVVVAGATGNVGREMLNILAERQFPVDEIAVLASRRSLGTE VTFGDKTLKTQDLDTFDFTGWDMALFAIGSDATKKYAPKAAAAGCVVIDNSSLYRYDP DIPLIVPEVNPEAVHGYSKKNIIANPNCSTAQMVVALKPLHDRAKIKRVVVSTYQSVS GSGKDAIDELWDQTKAHYNPTDDYQRKVYPKDIAFNVIPHIDVFLDDGSTKEEWKMVA ETKKIVDPSIKLTATCVRVPVFVGHSEAINIEFEDFLDEDEARDILREAPGIMVIDKR EDGGYVTPKECVGDFATFISRIRQDSTLDNGLNLWCVSDNLRKGAALNAVQIAELLGR EVLKKG" /EC_number="1.2.1.11" CDS complement(124698..124796) /locus_tag="Silicibacter_134" /translation="MKPHRVGTFVMKSEIYVEQNRRPRSFGPNRAF" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 124895..126046 /locus_tag="Silicibacter_135" /translation="MTRADPFYDSLQKVQTFENLTGGTRFTPLPEEWYVGCCDIVDST GLLARGQYKTVNMIGASAIAALMNAFDHAPFPFVFGGDGTSFAVPPHLADRARQELAK LRAWVAQEFDVALRAALLPVADLRDAGRDVRVARFAASSHLDYAMFDGGGLAWLEEEM KAGRYEIPAADPVAPPDLEGLSCRWDNVPAVNGEILSLLVLPHANTDPAAFDALVARI LSEVSQTERAGHPLPAIGPKLRFPPPGLGIEARLLRGNAPAILRKLMLFFQSAFAGLI FLRGRPAGSFDPIHYRSTIATNADFRKFDDGLKMTLDCDAKTRTTLERLLKQAQAEGV ARYGLHVQAEALVTCIVPSPLQDDHMHFVDGASGGYAQAAQMLKGAARD" /product="hypothetical protein" /transl_table=11 /note="Hypothetical protein" CDS 126914..127294 /locus_tag="Silicibacter_137" /translation="MANILTVKHRENVHLDPKKLSELYSQLGETSAEDVVCRAIEELA VRLTHCERLWRQDDIDNLRKSARSLIAISEQIGMMAMANIARDVTDAIDADDSPAVAA TLFRLIRVGESSLTAVWEQHDLTV" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3716 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(126110..126955) /locus_tag="Silicibacter_136" /function="COG: Carbonic anhydrase" /gene="cah" /transl_table=11 /note=", [EC:4.2.1.1] , Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase)., Carbonic anhydrase, prokaryotic and plant, Carbonic anhydrase" /note="High confidence in function and specificity" /product="carbonate dehydratase" /translation="MDVFPMFDCQYVSHHNSPRIRYAPTACVQFAPHWLSKGFQALRK SLEFGENCGYQPRQSTTRGELMDYAKPLPHYLVTRYHGWKATSYEENQGWYRRLAKEG QRPRAMVISCCDSRVHVTSIFGADQGEFFIHRNIANLVPPYAPDGDHHGTSATVEYAV TVLKVAHLIVLGHSQCGGVQGCIDMCKGHAPALEEKTSFVGRWMDILKPRFASVEDIA DPDEQARQFERQAVVASLENLMTFPFIDNAVKAGELSLHGLWTDIGEGGLECYDPKSN SFLQV" /EC_number="4.2.1.1" CDS 127426..128844 /locus_tag="Silicibacter_138" /function="COG: Leucyl aminopeptidase" /translation="MQPHFAVPNLAVPTFAAATDAALPLHIVTERTLDAWLAEQDGAT AGWVRSMGFRASWGQVVVLPGPDGSLRGALIGAGTPKSRQRQRFLLAAAAAKLPESTY SLASELPADLSLEVECFGWLMAQYAFDRYAKNTGAKARLVAPDGVDAARIEAMAAGET FTRTLINTPAEHMGPAELQGAVESLAEAHGAEVRSIVGADLLEQNFPLIHTVGRAAER APRLIDLRWGSEGPTLTLVGKGVCFDTGGLNLKPGASMALMKKDMGGAANVLGLAHMI MATGLKLRLRVLIPAVENAISGPAFRPGDILTSRKGLTVEINNTDAEGRLVLADALAF AQEETPDLLISMATLTGAARVAVGADIAPFFTDREGDAVTLSSTAQDAADPVWRLPFH DAYEAMIEPGIADLDNAPAGGFAGAITAALFLRRFADEARYMHFDVFGWSQSNQPARP KGGVGQGTRALYQALPELLGLS" /product="cytosol aminopeptidase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3717 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 128841..129581 /locus_tag="Silicibacter_139" /function="COG: Cell wall-associated hydrolases (invasion-associated proteins)" /translation="MTRARIDRPVVDLCAAPAGARDRQLLLGDTVEILATSDGWCHLR AEKDGYQGWVPGTALAEPLTPTHWVSAPATHAYTKADFKSPDLVSLSLGSQVVVSGSE GRFAQTDQGFVPLAHLMPLAQRASDPVAVAETLLGTPYLWGGNSRFGIDCSGLVQLSC HACAIACPGDSGPQETALGQTLPDGTPYERGDLLFWKGHVGWVRDPLTLLHANAFSMA VTLEPLQSAITRIAEQGDGPVTAHKRLT" /product="NLP/P60 family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3718 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(130012..130296) /locus_tag="Silicibacter_140" /function="COG: FOG: GGDEF domain" /translation="MLLAEKAFESMREAQEENAWSARHDKLTGLGNRKYLEEVAVETS TGPLGATLLIAIDLDRFKEINDTYRHEAGDVVLEHTAQRLSEKIKTGP" /product="Hypothetical protein ydaM." /transl_table=11 /note="GGDEF, belas" /note="Conserved hypothetical protein" CDS complement(130381..130911) /locus_tag="Silicibacter_141" /function="COG: Prolyl-tRNA synthetase" /translation="MDATHAASEEGLPISCEDLLSQLNSWGISYVLHEHAPLRTVEDA KAVEGALLRPGEQALRLKNLYLRDRKKRNYLVSLEQDRDVDLKALGATLGGGGLSFGS ADRLMEFLGVRPGAVTPLAMINGAPKGVRFFMDAQAQHADSIYMHPLVNTRTLAMPRA DLMVFFERIGVTPEWI" /product="YbaK/prolyl-tRNA synthetase domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO3242 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(130999..131784) /locus_tag="Silicibacter_142" /translation="MPACYLLVPYCFICPCRVEREGACLEARVVVVKVLILGVAQDAM RAVDWDGGLFDYILAIEEAWHLRPDWTHMLHSDSLAPDDRPVLLEAGQQVVTEADYEP VLTHFGGAAYTGSDLVLAASYWALAALEPAQVFCMGCEFDSPGAPIEGDARAGASRSN GARDLTAKARRLEYFASLCGCAIANLSSESSVLPFQRATFDGLDQVRPAYPSEEASMV ARQLEQQYGDPASPNAQYPCAQGMAEIDAAWRRCFTLRDAAVA" /transl_table=11 /note="unique gene of TM1040" /note="Hypothetical protein" CDS 132101..133687 /locus_tag="Silicibacter_143" /function="COG: Signal recognition particle GTPase" /gene="ffh" /translation="MRGTRHKPAKEAEGMFENLSERLSGVFDRLTKQGALSEDDVKTA LREVRVALLEADVSLPVARDFVKKVQEQATGQAVTKSVTPGQQVVKIVHDALVETLRG DEDPGALKIDNPPAPILMVGLQGSGKTTTTGKLAKRLKEKEGKKVLLASLDVYRPAAM DQLAVLGTQIGVDTLPIVKGQSPVDIAKRAKQQAALGGYDVYMLDTAGRLQIDETLMK EVEDVRDVVSPRETLLVVDGLTGQVAVEVAEEFDNKIGISGVVLTRMDGDGRGGAALS MRAVTGKPIRFVGLGEKMDAIETFEPDRIAGRILGMGDIVALVEKAQETIEAEQAERM MKRMMKGQFNMNDLRMQLEQMQQMGGMQGMMQMMPGMGKMAKQVEESGFDDKMVKRQI AMIQSMTKKERANPALLQASRKKRIAAGSGMEVSDLNKLLKMHRQMADVMKKMGKMGK GKMLKQAMKGMFGKGGMPEMPGGMPGGMDPSQMDPKALEAAAKAMGGKGGLPGGLGGL GGLGGGMGLPGGLSGFGKKK" /product="Signal recognition particle 54 kDa protein 2" /transl_table=11 /note=", Signal recognition particle 54 kDa protein 2 (SRP54)., Signal recognition particle protein, SRP54-type protein, GTPase domain, ffh: signal recognition particle protein" /note="High confidence in function and specificity" CDS 133697..134227 /locus_tag="Silicibacter_144" /function="COG: Acetyltransferases, including N-acetylases of ribosomal proteins" /gene="rimL" /transl_table=11 /note=", Probable GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) (Glutamine amidotransferase) (GMP synthetase)., GCN5-related N-acetyltransferase" /note="High confidence in function and specificity" /product="Probable GMP synthase" /translation="MSSAPTIETDRLILRPHVAADLEAFWSFYQSDRSRYMDVPTSRS QLWAGMLAEVGSWEIFGWGGLAIETKDGQLAGQVCISQPPHFPELELGWIVFDGFEGF GYAFEAASAMRDYAFEILEVPTLVSYIDGNNQRSVALAKRMGAVEDLNARTYDAADQV YRHSPDSSGPGLEAYA" /EC_number="6.3.5.2" CDS 134224..134829 /locus_tag="Silicibacter_145" /function="COG: Acetyltransferases, including N-acetylases of ribosomal proteins" /translation="MSTPSIPVIETKRLILRGPEAEDYPNFKATFTSYRARFMGGPLN TYEAWMLYAAEIGHWQVRGFGMWMIHDKITDETYGMAGGWQPAGWPEREIAWIIWPEK AGKGYALEATHAARNYFYTQAGWDGAVSYIDPKNLDSIRLAERLGAKKDHEAQTIDGN DAVYRHPTPAQLRDSQLTHGIEMEIGHYADPLFKPKGWAID" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3251 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 134759..135130 /locus_tag="Silicibacter_146" /translation="MASRWKSAITPTRCSNRKDGPLTETTTDPVARAAALLKEHRESI DRLDAIIVYTLGERFKRTQAVGKLKATHDLPPSDPAREAKQIERLEDLAREADLDPEF AKAFLNFIIDEVIRHHKKHQE" /product="chorismate mutase" /transl_table=11 /EC_number="5.4.99.5" /note="identified by match to putative ortholog SPO3252 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 135190..135555 /locus_tag="Silicibacter_147" /function="COG: Ribosomal protein S16" /gene="rpsP" /translation="MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLL PKDSEERVKMDIEKIQAWLDKGAQPTDRVARMLEAAGVREKTERNNPNKAKPGKKAQE RAEEKAAKAAEAAEAADAE" /product="ribosomal protein S16" /transl_table=11 /note="identified by match to putative ortholog SPO3253 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 135560..136213 /locus_tag="Silicibacter_148" /function="COG: Nitroreductase" /gene="bluB" /translation="MTGPVQEAKGCFPQAFRAELDLLMKLRRDVRRFRTDPVDEAVLT RCLSAISLAPSVGLSEPWRIIRVESETARAAALQNFETANAEALADYSEDRAATYARL KLSGMREAPVQIAFFCDDETGKGHGLGARSMPEMRRYSVVTAVTLFWLALRAEGLGLG WVSVLDPARMARDLDVPQSWSLIGYFCIGHPERLSDTPELEQEGWEQRFAALPIETR" /product="cobalamin biosynthesis protein BluB" /transl_table=11 /note="identified by match to putative ortholog SPO3254 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 136252..136401 /locus_tag="Silicibacter_149" /translation="MGLIRMVIFTLVAFGAGVLYERSGARERCAAAGGDWTRTETGTG MICRM" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 136403..136918 /locus_tag="Silicibacter_150" /function="COG: RimM protein, required for 16S rRNA processing" /gene="rimM" /translation="MSDVSEDLICVGALAGSFGVRGEVRLKSFCANAEEIEDYSPLLG ADGQTRYTLAITRAIKGGFAARIVDVETKEQADALKGVQLYAPRDRLPSLPDDEFYHA DLIGLEVYDTGGTLLGRVKAVQNYGADDLLELHGPGLSATVLLPFTKAAVPTVDLSQG RIIADPPAGVF" /product="16S rRNA processing protein RimM" /transl_table=11 /note="identified by match to putative ortholog SPO3255 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(136919..137929) /locus_tag="Silicibacter_151" /translation="MEQRPGGHMSDTSNQSGPDLDRERVAQALGIATDRARWRLIKST AAREVFLLEGTDCDPLVVKYDDDVSQVRFGELLSCYRSLERVMGRDGAFRMVPLVWAD AENRVLALKYVPGLTAYARLEAAEIDFDSRADVLRHCGAWLRQLHQSASDTPQPFDGE GMLKRVRRVAKTIRSGSQEVAYPKKFLGICAFMHHVTRGAQGRPCRHGTRHGDFHSRN VVFGRDGPLYALDPAPRDTGPVAFDVARFMTRLGYSFGLARTQTRGLAGLPAADWVAL SAGYGHPCQDDPVVHFLLCHQLFNDWLQMPVEKEHRSASQQRRIERIVSMFEVLRQQL QT" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 137992..138792 /locus_tag="Silicibacter_152" /function="COG: tRNA-(guanine-N1)-methyltransferase" /gene="trmD" /transl_table=11 /note="identified by match to putative ortholog SPO3259 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="tRNA (guanine-N1)-methyltransferase" /translation="MSKPTKSHGRLSIGASLKPRELMSDTPDLAGVWKAKILTLFPEA FPGVLGESLTGKALQQGLWQLETVDLRPFGIGKHKNVDDTPAGGGAGMVLRADVLGDA IEHAMQGTAGNWPLIYLSPRGRRMDQQMMQTFARCDGLTLLCGRFEGVDERVLEHYGI QEVSLGDFVMTGGELAAQALIDATVRLIPGVLGNQASTEEESFSSGLLEHPQYTRPAD WKGRAIPDVLMSGHHGKIAEWRQDMSEKITQERRPDLWAAYQARKSKT" /EC_number="2.1.1.31" CDS complement(138793..139185) /locus_tag="Silicibacter_153" /translation="MILRHCFVLGFSALVVAGCDYAGPTSDAAVQKRAQNDALWAERV TVRDGAKPYAFSADRARGVALIAPAAAGFAYTVADLERITAAQTECKAVFQDGILDLL KGYSETTNLRSTQEQLDSFNRWQLKLDC" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 139342..139674 /locus_tag="Silicibacter_154" /gene="yegP" /translation="MAAKFELYTDNAGEFRFRLKAGNGENILASEGYKQKASAENGIE SVKKNAADEARFERKETAAGKHMFNLKASNGQVIGTSQSYASASGRDGGIESVMRNAP EARIEDLT" /product="Hypothetical 12.7 kDa protein in ptx operon 5'region" /transl_table=11 /note=", Hypothetical 12.7 kDa protein in ptx operon 5'region (ORF117)., Protein of unknown function DUF1508, Domain of unknown function (DUF1508)" /note="High confidence in function and specificity" CDS complement(139751..140176) /locus_tag="Silicibacter_155" /function="COG: Predicted transcriptional regulators" /translation="MKLLDIGEVAKQSGTKPSTLRYYEDKGLIQSLSRNGLRRQYGPM VLEQLALIALGKQGGFSLDEIGAMFGPEGQPEIARTELDARADEIQRQAQRLEALSDM MRHVATCPASNHMECDKFQRLLRLATRIQRRGGTPKGKS" /product="HTH-type transcriptional regulator hmrR" /transl_table=11 /note=", HTH-type transcriptional regulator hmrR (Copper efflux regulator) (Copper export regulator)., Putative DNA binding" /note="High confidence in function and specificity" CDS 140244..141458 /locus_tag="Silicibacter_156" /function="COG: Sugar phosphate permease" /translation="MTAAPSTLPALDRRAVALLLAATLTTMANAAISPALPGLEARFA DHPQAALLTRFLVPAPSVAVVLIAGWAGVLADRLGRRPMLIGGVLLFALAGSLGMVLG SLEAILLSRLALGVAVALIMTAQTALIADYFDGAARSRVLGLQISARNLGGLVSITLA GVLALMSPMHAFAIHGLALLILPILWCAISEPKRPSPATTARGAPPATTQRLGLGLWA IAGLQMLTTICFFTMPTQVPFFVASHGIKNTAIIGSVMGALTLAGMLAATRYSTLKPR LGHARLFLLGYGLMGLGMAVLALAPGLAMIFLGAALVGLGFATVSPNFNEIALRAAPA DLRGRAAGIMTTSVFLGQIVSPFLTLPMVRHAGYSGTFATLAVLLGLAALVALLAYGV TRGATDAAERAS" /product="major facilitator family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3735 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 141722..142093 /locus_tag="Silicibacter_157" /function="COG: Ribosomal protein L19" /gene="rplS" /translation="MDLIAQLEAEQIAALGKEIPDFKAGDTIRVGYKVTEGTRTRVQA YEGVCISRKNGSGIAGSFTVRKISFGEGVERVFPLYSTNIESIEVVRRGRVRRAKLYY LRSRRGKSARIAEDANYKAKA" /product="ribosomal protein L19" /transl_table=11 /note="identified by match to putative ortholog SPO3257 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 142105..142326 /locus_tag="Silicibacter_158" /function="COG: Ribosomal protein L31" /gene="rpmE" /translation="MKKDIHPDYHFIDVKMTDGTVVKMRSTWGNEGDQLALDIDPSAH PAWTGGSSRLMDTGGRVSKFKKKYEGLGF" /product="ribosomal protein L31" /transl_table=11 /note="identified by match to putative ortholog SPO3256 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 142611..143420 /locus_tag="Silicibacter_159" /function="COG: ATPases involved in chromosome partitioning" /translation="MAHIIVVGNEKGGAGKSTVSMHVATTLARLGYKVAGLDLDLRQR SLGRYLENRLAFIAASDLNLPMVSLHELPEIDPDTLQPGENIYDLRLSAAISELEPIY DFILIDCPGSHTRLSQVAHSLADTLITPLNDSFVDFDLLAHTDEKGEKIKGPSVYSEM VWNARQLRAQAGLPPIDWIVIRNRVGTQRMVNKEKMERAINMLSKRIGFRVAPGFSER VIFRELFPRGLTLLDLKDVGVKQLNISNIAARQELRDMMKALELPEVEIDI" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO0689 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(143611..144924) /locus_tag="Silicibacter_160" /function="COG: Adenylate cyclase, family 3 (some proteins contain HAMP domain)" /translation="MLRSCAECCGNWPAWSRRLTARLDQQQGDGAIHAATEDLKNWLT EQGLKAVGREELLRRFCEELVNHGVPLLRMQLSQRALHPEFGGIGFTWTRQDGLNSEY FERVDHKEPRNEWVQSPFFALISSGEAEYYSRFSREDEARFPIFTRLKEMGATSYFAH WQPFGDFSQAQFDPDSPNAEGLVASWSFDGPPEEAEPCLALLRNVFGTLALVLAAAGN REMGRALLQVYLGRDAGARVLSGEIARGSSQRIDAVICLFDLRGFTALSESLPGEELV DLLNDYFGHVVQLIQSHGGNILKFMGDAVMAMFNLGTLQEDAQAALRAVAELGPRMRA VNEVRAAEGLPLAEYTMALHAGEILYGNIGAPNRLDFTVIGPAVNLTARIADMHRAVE RSIILSEDVRDAAGADGADLVSVGRYMLRGVAEPIELFTLYQPET" /product="adenylate/guanylate cyclase" /transl_table=11 /note="identified by match to putative ortholog SPO0688 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(144854..145312) /locus_tag="Silicibacter_161" /function="COG: Transcriptional regulators" /translation="MSKNDDFAVQDFLPFLLNRAAEDSSLEFQKLYKGRYGMLRTEWR VLFHLGMYTRMTASDISQRARIHKTKISRAVAKLAARRWVSRSRDESDRRSEHLELTA AGRSVYEDLRQQAQVYDQRLTQGFSAEDVALLRRMLRQLASMEPPADRTP" /product="transcriptional regulator, MarR family" /transl_table=11 /note="identified by match to putative ortholog SPO0687 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 145389..146744 /locus_tag="Silicibacter_162" /gene="hmgA" /translation="MTRHALPDQMIQAPSNQGTHEGYMPGFGNDFETEALPGALPQGM NSPQKCEYGLYGEQLSGTAFTAERPERTWCYRIRPSVKHSHRYEKIDLPYWKSAPHIP EDVISLGQYRWDPVPHTEEGLTWLTGMRTMTTAGDVNTQVGMATHIYLVTESMKDEYF FSADSELLVVPQEGRLRFATELGIIDIEPKEIAILPRGLVYRVEVLEGPARGFVCENY GQKFDLPGRGPIGANCMANPRDFKAPVAAFEDREAPSTLTVKWCGQFHETKIGQSPLD VVAWHGNYAPYKYDLRTYCPVGAILFDHPDPSIFTVLTAPSGQPGTANIDFVLFRERW MVAENTFRPPWYHKNIMSELMGNIYGQYDAKPQGFVPGGVSLHNMMLPHGPDREAFEG ASNSNLGPEKLDNTMSFMFETRFPQHLTEFAAKEAPLQDTYIDCWSDLEKKFDGTPGK K" /product="homogentisate 1,2-dioxygenase" /transl_table=11 /EC_number="1.13.11.5" /note="identified by match to putative ortholog SPO0686 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 146862..148118 /locus_tag="Silicibacter_163" /function="COG: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)" /gene="hmgB" /transl_table=11 /note="identified by match to putative ortholog SPO0685 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="fumarylacetoacetase" /translation="MPLKKSWVTSANSADHPFPLNNLPYGVFSTPDSDPRCGVAIGDM ILDLAAAEAAGLIDLADEPMFEMPFWNEFMEEGPAVWAALRTRLIALLEEGSDAQNKV EPCLVPMSGAEMHMPIMVSEYTDFYAGRHHATNVGTMFRGAENALPPNWLHIPIGYNG RASSVVVSGTDVRRPWGQLKGPNDDAPRWAPCARFDIELEMGAIVGTPSDGPITVQDA DDHIFGYVLLNDWSARDIQAWEYQPLGPFQAKATATTISPWIVTKAALEPFRCDTPAR EVELLDHLKDCGPMLYDIDLAVTLRPEGGEEATIARTNYKEMYYSAAQQLAHHTTSGC PMNAGDLLGSGTISGPNKDERGSLLELSWGGKEPLTLPSGDTRSFIEDGDTLTLKGAA KGEGYTIGFGDCTGTVLPALSDPFAR" /EC_number="3.7.1.2" CDS 148201..149151 /locus_tag="Silicibacter_164" /function="COG: Zn-dependent hydrolases, including glyoxylases" /translation="MAKAFASQGDMSEKKISFTEVGEGLYAFTAEGDPNSGVIIGDDS VMIVEAQATPRLANKVIECVRSVTDKPISHVVLTHYHAVRVLGASAFGAQNIIMSDTA RAMVVERGQEDWDSEFQRFPRLFEGHESIPGLTWPTTTFSDSMTVYLGNRRVDIKHLG RAHTAGDAVIHVPDQNVMFTGDIVEYHSACYCGDGHFGDWGKTLDNIKAYDVDAIAPG RGDALVGKDMVNAAIENTRDFVESTYRPAAKVAARGGSLKEAWDAVRDACDPKFKDYA IYEHCLPFNVARAYDEARGIDTPRIWTAQRDLEMWEALQS" /product="metallo-beta-lactamase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO0683 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 149274..150881 /locus_tag="Silicibacter_165" /function="COG: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases" /translation="MNKIFEVPLYPYARHADQDAQPPARHKVVVVGAGPVGLAAAIDL AQSGVPVVVLDDNDKVSFGSRAICFAKRTLEIADRLGVGHAMADKGEEWNVGKVFFGD RKVYDFNLLPEDGHQFPAFVNLQQYYIEEYLVDRVRALRDEGAPIEIRGKNRVTHVED LGGHVALTVDTPDGAYQLETGWLIACDGAGSPLRAQMGLDFVGRVFEDNFLIADVVME ADFPTERWFWFDPPFNKGQSALLHKQPDGVWRIDLQLGWDIDKEEEKRPENVIPRLKA MLGEDVQFELEWVSIYTFQCRRMEKFRHGRVIFAGDSAHQVSPFGARGANSGLQDTDN LIWKLKLVLDGVADESLLESYNAERIAAADENILNSSRSTDFITPKSDMSRIFRDAVL DLSEHHSFARPLVNSGRLSLPSVYDGSRLNSADRLPGAPTRTRPGAPCPDVPLEGGYL LPQLASGFTLLAINAEVPDGFEEAGVFVPALRLNGEASAPLAERYLGEASSAVYLIRP DQHVATRMDHFDPAHFHAALRRAIGKE" /product="monooxygenase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO0682 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 150887..151093 /locus_tag="Silicibacter_166" /translation="MSDDLTLTPNLAQPDDAYALLLSAHEGLSKAQSDALNARLILLL ANHIGDAEVLKQALTQAKQGLTDG" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO0681 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 151086..151733 /locus_tag="Silicibacter_167" /function="COG: Glutathione S-transferase" /gene="hmgC" /transl_table=11 /note="identified by match to putative ortholog SPO0679 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="maleylacetoacetate isomerase" /translation="MADVVLYDYWRSSASYRLRIALNLAGIAYESRSVDLVAGAQRSP EHLARNPQGFVPVLEIDGERFTQSLACLTYLDSTRGLGLLPQEPVARAHVEALAQSIA VDLHPVCNLSVARFGVTSSGGSLQMGDWMRQFIGPGLEAFDRLLARWPEPGEGSFCTG ARPGLADICLMPQLYNARRWEVDLNPFPRLQRIEASCAAHPAFAAAHPDHHQPAQ" /EC_number="5.2.1.2" CDS 151870..153084 /locus_tag="Silicibacter_168" /function="COG: Uncharacterized conserved protein" /gene="yvcK" /translation="MSKTAPSPPAPASAPGSDPGSDPGPAHVRPPGRDATQGPRLLFF SGGTALNEISRRLKAYTQNSVHLITPFDSGGSSQVLRKAFGMPAVGDLRSRLMALADE TDRGQPEILRLFTHRFAKHASERNVTQDAARLFEGTHPLLQGIPTPVRQQIREDLRQF QDAAPADLDYRNASIGNLILAGGYLRHGRQLEPVLAQMSRMVAVRGTVRPIADVNLEI GAELRDGRRVIGQRRMTGKEHAPLTSPIARLFLSDGTRELPADAVPLPQSNQDLIAGA DLICYPPGSLYSSVICNLLPKGVGQAIAARNVPKVYVPSLGTDPECLAMTLSDQISAL LAPLRRDAGDVATSAFLSHVICDLSVSEAARAEVLRDHGIPCIARPLAVSSGKSPCYA PDALCRQLLALA" /product="Hypothetical UPF0052 protein sll0154." /transl_table=11 /note=", Protein of unknown function UPF0052 and CofD, Uncharacterised protein family UPF0052, CofD_related: conserved hypothetical protein" /note="Conserved hypothetical protein" CDS complement(153160..155367) /locus_tag="Silicibacter_169" /function="COG: Membrane carboxypeptidase (penicillin-binding protein)" /translation="MTQGRNSGRGTGRGRGPLVAEKRNLGGNQRKPAKKAPRKRAPQK AKRGWSLFGRRKTARPQRRRGLLGWLLLPFQIVARVIWAVSWRMGVVGGLFLAGAVAF HYTKLPEYQALLDGRHQGSVTLLDRNGKTFAWRGDQFGGVVTADTVSPHLKNAIVATE DKRFYRHFGISPRGIASAVRINLSEGRGPLSGHGGSTITQQTAKLMCLGVEYDPDIWE SEAAYESDCRQSSLWRKGKEAIFALAMEVKYTKNEILSIYMNRAYMGGGAHGVEAAAQ RYFGKSANQVNPPEAAMLAGLLTAPSTLAPTNNIERSRNRAATVLRLMEEQGYLSPKE RQMAAANPAELSEAAAARAGGYFADWIMDTVPSFLGDQTTEDVVIRTTLDQRLQQAAE DAVNYVFENKVRAGSKAQTAVVVMSADGAVRAMVGGRKVRASGVFNRATQAKRQTGSA FKPFVYAAALELGYSPYDRVLDAEYCLDIPGSGPWCPQNYTRKFYGEVTLARALRDSL NVPAVKVSEAVGRDKVRLVAGEFGIESDLADGPSLALGVSESTLLEMTGAYAGILNGG SSVTPYGVEALTLVGDSEPLMGASGGMGERVIRPVAAQELIWMMEKVIAEGTGQRAQI PGWQAAGKSGTTSSAKDAWFIGFTADYVAGVWMGYDDNTPLTGVTGGGLPAEIWRETM VRVHDGLAPQPLPMAAPEPIVVPEPQPQRRNGGGFGRELERTLNGVLQDIFGN" /product="penicillin-binding protein, 1A family" /transl_table=11 /note="identified by match to putative ortholog SPO3725 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 155657..155995 /locus_tag="Silicibacter_170" /function="COG: Nitrogen regulatory protein PII" /gene="glnB-2" /translation="MKLIIAAIKPFKLEEVREALTKLGVSGLMVTEIKGFGAQAGHTE IYRGAEYEVNFVPKVKLEIVVPSDLADQVVETITQASRTGKIGDGKIFVLDVAQAVRV RTGETNQDAL" /product="nitrogen regulatory protein P-II" /transl_table=11 /note="identified by match to putative ortholog SPO3724 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 156025..157347 /locus_tag="Silicibacter_171" /function="COG: Ammonia permease" /gene="amt-2" /translation="MKKLTVTLAATALATLPGLAFAQEAAAETPDINPYIFTTLLFLI GGFLVFWMAAGFAMLEAGLVRSKNVTMQLTKNVALFSIAAIMYWLVGFNLMYPGDGWI IPGVMGPLFATTSLEPVGLGADAAALDYASVGSDFFFQLMFCATTASIVSGTLAERIK LWPFLIFVAILTGVIYPIEASWVWGEGFLDGLGFSDFAGSTLVHAAGGFAALAGALIL GPRIGKYKDGRTIPMPGSNLALATLGTFILWLGWFGFNGGSQLAMGTVGDVTDVSRIF ANTNMAAAAGAVTALILTQLLFKKPDLTMILNGALAGLVSITAGPLDPTLFGALLIGA VGGVIVVFTVPMLDKMKIDDVVGAIPVHLLAGLWGTFAVPFYTEGTSFITQIVGFATI GIFTFVVSGVVWMILKATMGIRVSEEDEINGLDMAELGMEAYPEFKGS" /product="ammonium transporter" /transl_table=11 /note="identified by match to putative ortholog SPO3723 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(157420..158064) /locus_tag="Silicibacter_172" /translation="MRGVFFTVLTAAGLVAGAAQAEGERAGAFDYYVMALSWSPNWCA IEGDAKGSEQCDDRHDYGWTLHGLWPQFHRGWPSYCRTTEAPPTRRQTGEMRDIMGSP GLAWHQWKKHGTCSGLSARDYFALSRQAYDTVTRPEVFRRLDKAVRLPASVVEEAFLK ANPSLTADSLTITCRDGFIQEARVCLSRDLDPVPCGRDVIRDCTLSNATFEPVR" /product="ribonuclease T2 family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3567 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 158234..159001 /locus_tag="Silicibacter_173" /translation="MAKPLMAKATAVWLVDNTTISFKQIADFVGMHELEIQGIADGDV AAGVKGFDPIANNQLTQEEITTAENNPLHKLKLKFNAAAAGEEKRRGPRYTPLSKRQD RPNSILWLVKFHPELADAQIAKLVGTTKPTIQSIRERTHWNIANMEPIDPVALGLCKQ SELDAAVQKAAKKRAAEGGVMNDDERRKLVSTEQSLEMDAEPKIPSAIEGLETFTLGS SDEDDKKEDEIVDADSFFNLPASSDEDEDDDSDDPRY" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3566 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 159213..159713 /locus_tag="Silicibacter_174" /translation="MTLQVTLTPDLVQAPLVTFGFDPFEARLVSIMRHFVAAANAPGS QAWHRAFVIAAENWGEAHGLAVAHTLWPVVRELLELREGDFTSNDPLDLDTRDLLTTD EAQFIAMLHHMRRDHTAKARDAVEALTHGQMNPDLIRAGLSFADRFPSGARQRLRGTP ALRVVG" /transl_table=11 /note="unique gene to TM1040, might have function in sulfur transfer, belas" /note="Hypothetical protein" CDS 159842..160693 /locus_tag="Silicibacter_175" /function="COG: Rhodanese-related sulfurtransferase" /translation="MDDPKTLVSTDWLAAHLKDPDLRILDASWYLPQMERDAKAEYDA EHIPGARFFDIDEISDHRSDLPHMAPPVEKFMSRLRAMGVGDGHQVVIYDGAGLFSAA RVWWLFRLMGQVNVAVLDGGLPKWKAEGRPLEDLPPVIRDRHMTVRVQNHLVRDVTQV SSAAKLGDHEIIDARAAERFRGEAPEPRPGMRAGHIPGSKNVPFTTLLNDDGTMKDAE TLRSLFEAAGVDLTKPAITSCGSGVTAAVLSLAMERMGKHDHALYDGSWSEWGAFPTL PVATGDN" /product="thiosulfate sulfurtransferase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3719 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 160697..161881 /locus_tag="Silicibacter_176" /function="COG: Aspartate/tyrosine/aromatic aminotransferase" /gene="tyrB" /transl_table=11 /note="identified by match to putative ortholog SPO3720 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="aromatic amino acid aminotransferase" /translation="MFENLKPQPADKILALMQMYREDPRDQKVDLGVGVYKNAEGVTP VMRAVKAAEQRIIDEQTTKAYTGLAGDPAYADAMIDLILGTSVERSKIAAVATPGGTG AVRQAFELIKMANPEARVFVSDPTWPNHVSILKYVGIETVVYRYFDTETRAVNFDGMI EDLKGAKTGDVVLLHGCCHNPTGANLNISQWQAVVELLNERGLIPMIDIAYQGFGDGL EEDAAGVRLVASSVPECLIAASCSKNFGIYRERTGLLMAISQKGDEAGLNQKTLAYLN RQNYSFPPDHGARVVTTILNDPELRADWQKELEETRLGMLALRQQLADELQRLSGSDR FGFIAEHRGMFSLLGTTPELVEKMRVDAGIYMVGDSRLNIAGLNAQTVPILAKAIIDA GV" /EC_number="2.6.1.57" CDS complement(161983..162597) /locus_tag="Silicibacter_177" /function="COG: Enoyl-CoA hydratase/carnithine racemase" /translation="MIDHHQDSRGLLTLRLNRPEKANALTPEMLAQMIEILRTATEAR ALILTGTGKVFSAGADLDAAKAGLATSPLWEELSGALAALPCLKVAALNGTLAGGANG MALACDLRIAVPTAKVFYPVMQLGYLPQPSDAKRMRALVGPARTKLILAAGQKITAEE AYGFGLIDRIVAPEELMAEAEALVAPALAAEPDVARAILRAADA" /product="enoyl-CoA hydratase/isomerase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3439 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(162594..163343) /locus_tag="Silicibacter_178" /function="COG: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /translation="MKFANKTIVISGASRGIGASAAKEFAAEGANVVLLARSADALEA LAQEIGEKALALACDVADYAAVEATFARARDHFGSLDVLICNAGMIDPIARLEEADPA GWAQLINVNITGVFNMMRAGLPHLKAAGGGAVLTIGSGASQRPLEGWSAYCTSKAGAA MLTEALHLEEGENGIRVMGLSPGTVATQMQREIKASGINPVSQLAWEDHIPAEWPART LMWMLSADADEFVGTEIALRDEGIRKRVGLI" /product="20-beta-hydroxysteroid dehydrogenase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3440 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 163478..164992 /locus_tag="Silicibacter_179" /translation="MSISFVRKLGAVAPVLLIAQAAHADVTAQDVWADWKDYMSSTGY EITATETESSGKLTVSDITMSMDVEGDSFSMTMGSLDFIENGNGTVNVVMPTTFPMSF NVNADGDAISGDLLYTHDGSPMVVSGDTSEMAYNYTGATSAISLANLVIDGDAVPADA IMLNVNVTDMVSNTLMKIGDVRSYSQTMTMASVAYDFMFQEPEGDDGAAFNGALQGLE FTGDMTIPEVDDPSDLAAMLKAGMAYVGGFTFESGNTNVKGSDGPDNFDFQTSSNGGA INIGLSPAGLNYDVTQRDTTLNMMGSDIPFPVSLSMKEMGMNFAMPLTKSDEEQDFAL GIALREFAVPDMLWGLIDPAGELPRDPANLVVDLSGKGKLFFDLVDEEQMAAVESGEE MPGEVNSLSINEILLSVAGAELTGDGAFTFDNTDLESFDGMPAPEGEASLKLVGANAL IDKLIGMGLVSEDDAMGARMMMGMFTVPAGDDTVTSKIEVNEEGHVLANGQRLK" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO3441 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 165054..166475 /locus_tag="Silicibacter_180" /function="COG: Predicted Zn-dependent proteases and their inactivated homologs" /translation="MAQSPCDTAALWLALVQCHPFAKVPMTQTPETLCHALLDAAQKA GADSADAMAAEGSSLSIEVREGALEHAERSEGVDIGLRVFVGQRQAQVSSSDTRPETL TAMAERAVAMAKEAPEDPYAGLADPAQLAKSWDLDALEMADPSAEPAPDQLQQDALAA ESACAAIDGISQVQSAAAGYGRHDIHMAASNGFSGGYARTSRSISCVGIAGTGTGMER DYDGDSRIYQTDLRSAEEIGRTAGERAIERVNARRPKTGAYPVLFDERISSSLIGHLL GAANGASVARGSSWLKDSLGAQILPEAFSVIEDPLRPRVSGSRPFDGEGLPTQRRAIV DKGVLTGWTMDLASARKLGLESTGNAARGIGSVPSPSNWNIALTQGQQTREELLRDMG TGLLVTSMIGSTINPNTGDYSRGASGFWVENGEIQYPVNEVTIAGNLLDMLKTLVAAN DARTHLSRVVPSLLVEGLTLAGE" /product="PmbA" /transl_table=11 /note="identified by match to putative ortholog SPO3442 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 166462..167262 /locus_tag="Silicibacter_181" /function="COG: 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase" /translation="MPENDLSLLIGAAQKAGEIAGQFTGTEAQKWDKPDGAGPVTEAD LAVNRYLEDSLRAARPDYGWLSEESEDDPTRQSRARVFVIDPIDGTRSFADGSRTWAH SLAIVEQGTPIAAVVYLPQRDLLFAAASGQGATCNGARLQTTRAQNPETAHILSAKPT LEAKHWQGGTPPGFQRSHRPSLAYRMSRVADGSYDAMLTLRPTWEWDIAAGVLIVQES GGRATDRDGAPLRFNRADALQNGVVAGGPKMHRALLNRLVYGAQGSKP" /product="inositol monophosphatase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3443 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 167262..168458 /locus_tag="Silicibacter_182" /function="COG: 3-deoxy-D-manno-octulosonic-acid transferase" /translation="MFGPGGTQIPNPLRLKRPEGELVWAHATTQERLLGLCDVGCRLK MMRPDLSVMLTWEEDMRPAKLPEGCDIPLGPLTVEQPNDIRNFLDNWSPDVCVWAGGR LRRLLMRHMREREMPALLCDIDADELPSRASRWLPDQRHRLLNGFAAILVPGTEVSER LKRAGVAPERIHPAGRLFQSSTPPSCNDDELAQMQKQFASRPLWLAAHVSLSELPAVL KAHRGALRLLHRLLLVLTVDTFEDLDAARSLLRKEGLSFADWDMGEDPEDHTQVAIGL TENLGLWYRLCPISFLGNSLIRGAQGTNPLDAAALGSAILHGPGVVAHAQAYQRLAAL DAAERIHGEEELADAVFRLSSPDRAAEMALAGWQVVTEGAVMTDTLLERIQDLLDQSE LSHAPA" /product="3-deoxy-D-manno-octulosonic-acid transferase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3444 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 168445..169446 /locus_tag="Silicibacter_183" /function="COG: Tetraacyldisaccharide-1-P 4'-kinase" /gene="lpxK" /transl_table=11 /note="identified by match to putative ortholog SPO3445 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="tetraacyldisaccharide 4'-kinase" /translation="MRPPEFWNKPPSHFDLRACLLSPLGALYAKGTATRLRKGAPTRA PVPVICVGNLNAGGTGKTPTVIWLMEQLGAAGHEVHVVSRGYGGRLEGPVQVDPRRHS AADVGDEPLLMAAFGEVWVARDRGAGVTEAAAAGASVIVMDDGFQNPSVAKDFSIIVV DAKRGFGNGRCLPAGPLREPVATGLSRADLVLSLGDARAQETFQSIWGAEIPVPHLTG HVEPLPTGMPWQGTKVLAFAGIGHPEKFFATLRGLGAELCRAEALEDHQTLAPALLTR LEQEARLLGAQLVTTEKDAVRLPLSFRPKVITLPVRLRVAQGDTLLARLKDIAPPPD" /EC_number="2.7.1.130" CDS complement(169483..170184) /locus_tag="Silicibacter_184" /function="COG: Thiol-disulfide isomerase and thioredoxins" /translation="MTRIMTGICAAVAVAAGVYAINNFSGREDNASLLDIQLVSAANA QESSQGAEAAEVDTSTIMEMVQGAEDAPVTLIEYSSYTCPHCANFHADAYKKLKAEYI DTGKVKLVYREVYFDRFGLWASMVARCGGEEKFFGITDLIFKQQAEWTRAGGPAEMVE ALKKIGRVAGVDGDALEACLQDATKAQTLVTWYQENATKDDISSTPSFILNGTKIANQ PYEDLKALIDAELEG" /product="thiol:disulfide interchange protein, DsbA family" /transl_table=11 /note="identified by match to putative ortholog SPO3446 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(170181..170708) /locus_tag="Silicibacter_185" /translation="MAYRHSSTRGFKRTGSLLNDQIRKAGESRGFAVSRLLTHWEEIV GPELAAMARPVKVGYGRGGFGATLTVLTTGAMAPMLEMQKAALREKVNAVYGYNAISK LHITQTAPIGFADGQVDFRYAPKTRKQEEPAPEDVAAAKETATGVENDDLRAALERLG RNVLTRQKSLRKGYK" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3447 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 170794..171855 /locus_tag="Silicibacter_186" /function="COG: A/G-specific DNA glycosylase" /gene="mutY" /transl_table=11 /note="identified by match to putative ortholog SPO3448 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="A/G-specific adenine glycosylase" /translation="MRDHPVSAEQLSQDLLVWYDTHAREMPWRVGPAARASGVRPDPY RIWLSEVMLQQTTVAAVKDYFERFTRRWPRVGDLAAAEDGDVMAEWAGLGYYARARNL LKCARVVAEEFEGVFPDAYEGLIALPGIGPYTAAAISAIAFDRPETVLDGNVERVMAR LHDEHEPLPAVKPVLKAHAAHLTPSARPGDYAQAVMDLGATICTPKSPACGICPWRDP CRARVKGTAPELPKKTPKKPKPTRYGFVYLARSAEGDWLLERRPDKGLLGGMLGWPGS EWNDAPTETPPFDADWQDLGAEVRHTFTHFHLILQVRSAELPADFEPRAGQELVRRHD FRPSSLPTVMRKAFDLTHR" /EC_number="3.2.2.-" CDS 171936..173078 /locus_tag="Silicibacter_187" /translation="MTEFIPTEKLRDWRHALPFWLSLALVPLVWAGAYLGSWWVLMTP LATWYLFAVLDGVLGLELENADPQTAEADLKWYVRLTSVWVPIHVLCLFGLIAYVSDA THLSRLEKIGVFFGMGVISGTIGINYSHELMHQRSRLERWLADILLAMVLYSHFRSEH LLVHHRYVGTPRDPVTARYNEGFHRFYPRVLWQCWRSAFGAEADRLARKSLPWTHRSN PFWRYWALQLGMLALAFALGGLSGVLLFLVQASAAIWQLELVNYIEHYGLTRKHLGDG KYEHVKPHHSWNAAHKASNWLLINLQRHSDHHYKPDRRFPLLQNYSASEAPQLPYGYP VMSIAAMIPPLWQRIMNPRVRRWRKQYYPEITDWKPYNRHQTPMPR" /product="fatty acid desaturase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3449 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(173284..174780) /locus_tag="Silicibacter_188" /function="COG: Methyl-accepting chemotaxis protein" /gene="mcp" /translation="MVTSPFQKVYVMSQIHRDELLFWFGLGEEDRSSIVGMAPLVERH IDAVLDDFYDLCLSRPETKGYFPTEQIVAHAKAAQRAHWVKLFSGRFDDSYMSSADKV GRVHFEVDLPFHLFLGGYATVGDRILKVVLTQKNGWRGTKARMKQARALQRLILFDCE RVIAGYIDAQLQEREKALTVMTQGIQRLESGDLTTEMPSGDKGGLPERYDNVRLSYNH LLRHWSGILSDATRRAHSVDAKMAETARMTREMAHRSGEQASTLNETVTSVNSMTCST RLTSEKVNDAAKQIEANRLVAEEGGAVVRDAITAVERIEQSSSQINKIVDVIDEISFQ TTLLALNAGVEAARAGEAGKGFAVVASEVRALASRATDAADDIKKLIATSSDQVLEGC QLVHQTGERLDSIRSSADNVARIMQEVDGVIFEQTGQLENISERMERLDRYTQDSADQ ANEVSSTADALAQDSAALKASMDGFKTGDIALREAAQDKEFERLANRG" /product="Heme-based aerotactic transducer hemAT" /transl_table=11 /note="Bacterial chemotaxis sensory transducer, Methyl-accepting chemotaxis protein (MCP) signaling domain, Heme-based aerotactic transducer hemAT (Transducer HtB protein)., , belas" /note="High confidence in function and specificity" CDS complement(174808..176202) /locus_tag="Silicibacter_189" /function="COG: Adenylate cyclase, family 3 (some proteins contain HAMP domain)" /translation="MADVALTKADPPARASLDPILQDDALQSQHIHAALEEHKKRGVE MAVLARWIIMPMVAVFLIAVYPEPSQLYYVALLALLCVNGFFIRRFARVGRSRAELGL IMLDLVLMTFGMVVPNPFDPNEMPVPMLYQYDNFMYFFIILATGALAYSWRTVMAIGV WASVIWLGAAGLMWAFMTPDEELARRLSEVLVDWPHVQDLYNPNDVGFRFRIQEAMVF LMVAAILAQSTRRFYLMLDQNADLARERANLSRYFSPNVVDQLSQNDEAISQVRTSRI AILFVDIVGFTRLAEHRDAVEVIELLRGFHGRMEAEVFRHGGTLDKYLGDGLMATFGT PAPGPQDASDALACARAMCAVLDQWNAERRATGEPEIHAGIGIHFGEAVQGDIGANRL EYAVIGTAVNIASRLEGMTRPMQARIVMSDALYRRVQEEGGAAALLRGFHCTPEQTIR GLQEPMPVWALTSL" /product="adenylate/guanylate cyclase" /transl_table=11 /note="identified by match to putative ortholog SPO3450 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 176269..176361 /locus_tag="Silicibacter_190" /translation="MSRHMQKTPPDRRGKVQRAEPLGSALSAFE" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(176386..177555) /locus_tag="Silicibacter_191" /function="COG: DNA modification methylase" /translation="MTHLVDNQNERKSAVVIEAEQMNKTIAKGAATALPLNTILDGDC IERMASLPSNSIDMIFADPPYNLQLKGQLHRPDNSKVDAVDDEWDQFSSFGVYDQFTR AWLKEARRILKPNGALWVIGSYHNIFRVGTALQDEGFWILNDVVWRKSNPMPNFRGKR YTNAHETMIWASKSEGAKYTFNYEALKALNEGIQMRSDWVMPICTGHERLKDANGDKA HPTQKPEALLHRILVGSTNPGDVVLDPFFGTGTTGAVAKMLGREFIGIEREEAYRKVA EERIKNVRKFDREALQVSASKRAEPRVPFGQLVERGMLRPGEELYSMNRRHKAKVRAD GTLIGDNIKGSIHQVGAHLENAPSCNGWTYWCFKKDGKTVPIDVLRQQIRAEMQA" /product="modification methylase" /transl_table=11 /note="identified by match to putative ortholog SPO3451 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(177601..178290) /locus_tag="Silicibacter_192" /function="COG: Ribonuclease HII" /gene="rnhB" /transl_table=11 /note="identified by match to putative ortholog SPO3452 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ribonuclease HII" /translation="MRPFFCAAFGAPSCMRAANALSGGMDYPDLSLEEAAQARGYTRI AGVDEVGRGPLAGPVTAAAVVLDLADLPEGLNDSKKLTPRRRAALEPEIMARASYAVA HASVEEIDHHNILRASHLAMERAVAALDPQPDYLLIDGNLIPRALHIPAEAVVKGDGR SLSIAAASILAKEARDRIMVDLAQQFPGYGWERNAGYPSKQHRDALIKIGVTPHHRRS FKPVHKILYQE" /EC_number="3.1.26.4" CDS complement(178334..178801) /locus_tag="Silicibacter_193" /translation="MTRLASSTRNLHRKFIAAVIATALVITGFSAAPARADSDDIAKF IAGAAILGIIGAAINDHKKDRHRPPHVDPTPAPKPLPPRVRRYDLPAQCLTSIRVHGK ERNLLGMHCLRRNYTHVNTLPNRCYREFDNRTQSRRGYRPACLRQYGYRLVRL" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 178980..179273 /locus_tag="Silicibacter_194" /translation="MKHTRLLPALLLLLLALAQPAQAAGCYADYKAKQDQPLKLHYGV MELSGDCSKAAAKGEVAERLSRAGWTLLNVLTVFGPEGLEQRKADAGRNFLRF" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3453 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 179245..179946 /locus_tag="Silicibacter_195" /translation="MPDATFSVSEVRHAGSRVIALGIGAIVALLVVAGTVLLLTLPDG NAFNARIERLFVENDLTTQAEIKLLEILAQSGTAFADTLASYRMVIFVLLVFATAMMI AALVVLAMLVMLNRRMAQIERAGIQVTELLISREENTVYLNNMGFKLTQAAMETLSVL AEARLDDDVLSGAEIEAVISGKSSHDCEEAAGATRIKRLRDTLGNQMISELLVKNIAK RGYVLAINKDVIRMV" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3454 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 180524..181714 /locus_tag="Silicibacter_196" /function="COG: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis" /gene="spsC" /translation="MHQGEPIPEAARDAIEALMQSGDLFRYTAPQDAPVSLLETEFAE LLGSKYALAVSSCSAALFLSLKALDLPRDARVLIPGFTFAAVPSSVVHADCVPVLCEV GENYRINMADFEAKLDQDIAAVIISHMRGHTSDMDAIMALCEARDIPVVEDAAHSLGT TWHGRNIGTIGKVGCFSFQSYKMLNAGEGGILVTNDADVVARAVIMSGAYEHNWQKHK PARGDNGTALAEAFGRWQNLLPLYNLRMSNLSAAVIRPQIPELARRVADGLKNHDYVA AKLNAHANFHVPAPLAPERRAPDSIQFNLVGMDDAQIEAFAKATADKGVKVQIFGRST DNARAFWNWQFLKDLPELPETRAMLMRACDVRLPVRLTQDELDVIAQILLSSVEETMA RAAA" /product="Spore coat polysaccharide biosynthesis protein spsC." /transl_table=11 /note=", DegT/DnrJ/EryC1/StrS aminotransferase, DegT/DnrJ/EryC1/StrS aminotransferase family" /note="Conserved hypothetical protein" CDS complement(181780..181911) /locus_tag="Silicibacter_197" /translation="MRLGVRVDMLRGSAPARLRHIKMWRRPLGRAPRCRAAGDRALM" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(181964..182521) /locus_tag="Silicibacter_198" /translation="MAEQDKPLLIKRYASRRLYNTETSDYVTLEDIAGFIRDGREVQI IDLKTGDDLTRQYLLQIIAEHESRGENVLPVNVLNDLVRSYMVPGGGVMPQFLQASFD MFRDSQSKMMENMNAMNPMAQMPGFEAMKAQQEAFLKAMTGGFGGGWTGGGGEDGSPA AEGEEDLGDIKRQLAELQEKLSKLS" /product="polyhydroxyalkanoate synthesis repressor PhaR" /transl_table=11 /note="identified by match to putative ortholog SPO1294 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(182849..183295) /locus_tag="Silicibacter_199" /gene="phaP" /translation="MAKTQDFSAMMKDMMASFPVDTSAMEGFFKSSAALNEKLSAVAL DAAEKNAEISSKWTKDTLTKMGEISKAKTEPADYAKAATDFASASAEVAAENMAAFAE VAKKVQMDTVELLMAAGKDMSEEASAVVKKATEEVSTAAKKAAAAK" /product="phasin, PhaP" /transl_table=11 /note="identified by match to putative ortholog SPO1293 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 183731..184069 /locus_tag="Silicibacter_200" /translation="MRASPAPSLRLPGDCISGGGAAISLFMPSGLISATKRPRHRDPA LRRGTQTTDRQTTSGSITSTGQKRRVCLDGPHWRSRGARASGFSMRAVRHGRFAAPGL WSPRDARPRN" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 184165..184935 /locus_tag="Silicibacter_201" /translation="MPPAPASKCSLLLARFQPRRVSRGASWLGLSLTFCLLALLLSAC GRSPTEREQMFLGKIHGESLDYSRLRLVEGAPLRAVTFRRPQRPRVTCRERILPPRPA GELVTASPAALALFNHIFFTRDWFLPDYTPEYPEALHLVEAMLLAHEATHVWQWQNRA VTGYTPLKALGEHSRSSDPYLFDLDGPADFLAYGYEQQGTIVEEYVCCRALAPDAART QRLHAMLARVMPVSDLPQSRESDVYLPWKDAKVAGICD" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1128 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(185102..185785) /locus_tag="Silicibacter_202" /function="COG: ABC-type spermidine/putrescine transport systems, ATPase components" /gene="lolD" /translation="MSEVTLKIEGLRKTYLAGTPGEVAVLRGVDLTLHAGEVVALVAP SGAGKSTLLQIAGLLDVADAGRVEIAGQDMAGARDRKRTRVRRQDVGFVYQFHHLLPE FSALENIVLPQLANGISQRDAEARGAELLALVGLETRAAHRPAALSGGEQQRVAFCRA LANRPRLLLADEPTGNLDPATSDQVFEVLMQLVSETGLSALIATHNLELAARMDRVLH LEDGVLVER" /product="lipoprotein releasing system ATP-binding protein" /transl_table=11 /note="identified by match to putative ortholog SPO1124 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(185778..187061) /locus_tag="Silicibacter_203" /function="COG: ABC-type transport system, involved in lipoprotein release, permease component" /gene="lolE" /translation="MAATAPFSRFEWMIAWRYLRARRSEGGVSVMTWISLIGITLAVF ALIATLAVRSGFRSEFVGTILGANAHATVYAHGTVTAAGTLDRRITDYAALAEAVGQV PGVLQAAPLIKGQVMASRGDRNAGVQVYGIHAEDLAKIPGVAQSDVAYGDLGRFDDGI ALGSGVARTLGLGIGDKVKLISPNGVKTAFGTSPRVNAYEVVYVFTAGRYDIDNTRAY LPFAEAQSYFNREGVADEIEVMVADPEAVDQYVLPLLQAAGQGYGVWSWRDSSGGFLR ALEVEDNVMFVILSILVLIATMNIVSGLIMLVKNKGRDIGILRTIGLSEGSVMRVFFI CGSITGVIGTVLGVILGCLFAIYIDPIFSFVNYVMGGGVWDPSIRGIYALPAELRAGD VISAVSLSLGLSFVVTIFPARRAARLNPVEALRYE" /product="lipoprotein releasing system transmembrane protein LolE" /transl_table=11 /note="identified by match to putative ortholog SPO1123 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(187150..187662) /locus_tag="Silicibacter_204" /translation="MITRMVTLLGGAGAGLGLSQFPAYAQAYLQRLGGHVDALRRTVA EFDADAAALGLERHAALVQLAQGGEMGAARAETMAATIDRYGRLSSDLHELSAMAPVE RALHLGRFAEAEIASATLSAFEPAVAVSLDALLLAAIGALVGGGLIWGMMAGGRRVLA RRPAGRDRLA" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(187951..188373) /locus_tag="Silicibacter_205" /function="COG: Predicted thioesterase" /translation="MPAFLSFRSVVDPADCDFLGHMNVSRYFAACSDGVFAIQSEMGL TASDMREGRRLSFAVVNVQSNFRAELAAGDAIRLETSIIDVGTKSMTFRHRMFRADEN LLAFETVFKCVMFDLEARISRDIPDEVRARASQFLEEA" /product="hypothetical protein" /transl_table=11 /note=", Thioesterase superfamily" /note="Hypothetical protein" CDS complement(188400..189194) /locus_tag="Silicibacter_206" /translation="MDRSPYYGTDKIMALQRARDAQVADFADLAGAVIHARTFSSDDP AALGWDYLKKVMADEGMVTLRGADQATIAAAKSELSDFDPRLHVWDLFMADAETIRRV CDPIVQNSLPAGMRQISEAEMTPEKAREVQVFLTQQGVSPFSTDALLGRLFPARLIAL QNASDRIAAAGFAAMTHNRHSPFFNSAWVGLIAVDPELRGLGLGKHVDAICNLVAVTE LGAAATMEFVAPDNAPSRAMLESCGLRQVEGKSVVMFSTSTDRLTR" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(189399..189929) /locus_tag="Silicibacter_207" /function="COG: Dihydrofolate reductase" /translation="MHPVIYDVAVSLDGFISGPAGDISKFAHEGPVVEDYYNRLGGYK LALMGRKTYEFGYEFGMEPGQNPYPHMRSIVVSDSLQLPETSEVTVLKRPGAEGLRAE IARAEGPVYLCGGGAFAGWMLKHQLIDRLILKRAPCVLGQGVPLFGADAPAVTMERTA TTPYQNGYLLERFLLR" /product="Hypothetical protein yyaP." /transl_table=11 /note=", Bacterial bifunctional deaminase-reductase, C-terminal" /note="Conserved hypothetical protein" CDS complement(190583..191359) /locus_tag="Silicibacter_208" /translation="MQLSLDDPLWDHLPGAHGVEDVRGPLSSLLAEWDPELCNMLLWD RLYHQESLYPATWAALPWLWQIAGRHADAVAPLFDFFAHLLALAKRTPASYCAYEGLP LSGADLGHWHVSAPPAMIPPADALFEALVVWIEPWAVQVCRALNTLIEGADRAQAAHY LRGVTAWEHPEHESFERALGFLADGWSIEEMLETLEADEDVPFHMSARDISFAAQEAA RLQGLCPDLATDIRALVDAVSTDRPETPTQPHPDQKSLFR" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(191474..192829) /locus_tag="Silicibacter_209" /function="COG: Prolyl-tRNA synthetase" /gene="proS" /transl_table=11 /note=", [EC:6.1.1.15] , Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA ligase) (ThrRS)., Prolyl-tRNA synthetase, bacterial, tRNA synthetase class II core domain (G, H, P, S and T), proS_fam_II: prolyl-tRNA synthetase" /note="High confidence in function and specificity" /product="prolyl-tRNA synthetase" /translation="MRLSRYFLPVLKETPSEAQVVSHRYMLRAGMIKQSAAGIYSWLP LGYRVLKKIEGIVHEEQMRAGHIPMLMPTIQSADLWRESGRYDAYGEEMLRIRDRHDR DMLFTPTAEELITDIFRANVSSYKDLPLTMYQIQWKFRDEIRPRFGVMRGREFYMKDG YNFDLTKEDALHAYNRHLVTYLRTYERMGLQAIPMRADGGPIGGDYTHEFLVLAETGE SEVFYDSEITDLTFGAREIDYDNVEQCQAVLEEFTSRYARTDETHDEALFNAVPEERR RVARGIEVGQIFYFGTKYSEALGATVQTADGQSVPVHMGSHGIGVSRLLGAIIEASHD DKGIIWPEGVTPFHCGIVNLKQGDDEADAACEQLYAALTAIGLEPLYDDRKERAGGKF ASMDLIGLPWRITVGPRGLKNGVVEVTSRRTGESEEMSPEDAVKKIAAIYANHPTPRG F" /EC_number="6.1.1.15" CDS complement(192900..193025) /locus_tag="Silicibacter_210" /translation="MSCDIFAQSLLNSQNRAASAPARQAQAQVRGLRDAGSGCLA" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 193691..195430 /locus_tag="Silicibacter_211" /function="COG: Signal transduction histidine kinase" /translation="MTRAAKLTPDPYDVQLRELGLVQRQPDSDIDNLTRLAAQVLDAP TALVSVVQRSLDRQFFKSCVGLPELSSVLRQTPLSHSFCQFVQDANQPLIVPDSRNDA QLRDNAAVIDLKMVAYLGVPIHLPDGTPIGALCVIDRVPRQWSSDNLKTLQHLAVAVD NVIALKHARELAAEAERTAKREAEARKTYLAHMSHEIRTPLNGIIGSVDLLLREASRV NLDPREQNDLLRTINRSARNLQHLLNDALDIAKIDAGKLELAPAAFDLHETVDDVMKL FSAQACEKGVELNHSFRGIEAQEQRYGDRFRLAQILGNLLSNAIKFTDDGSVSLQING TPDALHLTLRDSGCGIAPDRLDKLFLPYTQASADVAQTKGGTGLGLTIVHQMVELMQG RIRAESVPGRGTVFHLYLPLPLTTSAPEAEKVHDPARDGIGDTAPVASPPPAPSNAPL SGKRVLIADDSPANRLVLQKMLENLGATVDKAFDGGDAFGRAVARAYDVLLLDIHMPG QTGTEVVKKLRADPRHQAHDALCIAVTGSTEKQEVEHYLDSGFDAWIGKPLRQSDLMR VLSPLLLEPPSRA" /product="sensor histidine kinase/response regulator" /transl_table=11 /EC_number="2.7.3.-" /note=", Histidine kinase, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /note="High confidence in function and specificity" CDS 195529..196671 /locus_tag="Silicibacter_212" /function="COG: Predicted permease" /translation="MALPARKQLKYWGIAAVLFAVVMWALGNVLMPFILGGAIAYIID PLADRLERAGLSREGATAVITVGAVLIFLILLLLIVPALINQMIDLVQTLPQALSNLR AFAQERFPSLFEDNSQLREALAGLWQIIQDKSVTLLQTFVGSAMSLLNIVVLLVIVPV VAVYLLVDWDRMVARIDELLPRDHAPVVRHLASEIDRVLSSFIRGMGLVCVILGTYYA VALMLVGLNFGLAVGFVAGLVTFIPYLGAIIGGVLAIGLALFQFWGALEGADGEMIRQ GTDWLRIALVAGIFAIGQMVEGNFLTPKLVGNSVGLHPVWLLLALSVFGALFGFVGML VAVPVAAVIGVVARFAVEQYLHSRLYQGLSHRDANVRTSEDTPTDI" /product="membrane protein" /transl_table=11 /note="identified by match to putative ortholog SPO1119 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 196725..197402 /locus_tag="Silicibacter_213" /function="COG: ATPase involved in DNA replication initiation" /translation="MSEQLSFDLPAKPALGRDDFFVAPSNAMAVALIDPAFAWPSGKL VLTGPKGSGKTHLAHVWAKESGARVVPAHALTEADVPELASGPVAIEDVPDIAEDALA QKALFHLHNMVLTHGHRLMLTGRPAPNLWGLGLADLQSRVQAATHAALEAPDDALLAV VLAKLFNDRQITPKPDVIPYLVGRMDRSFAAAAAVVEQLDRLALAEQRTLSRALAIRL MSSDQKG" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1118 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 197578..199224 /locus_tag="Silicibacter_214" /function="COG: Exopolyphosphatase" /translation="MTIQPDAPHRDLDTTPPVADAPEAAAPDAAAEDWGPFGRPLFDD PDARALSRVGVVDVGSNSVRLVVFDGAARSPAYFYNEKIMCGLGAGLSETGKLNPKGR ARALEALKRFQMLAKGLLSDPLTVVATAAVRDASDGPEFCAEVEAATGLRIRVITGEE EARLSAQGVLLGWPGAYGLICDIGGSSMELAEIQDGEVGRCVTSNLGPLKLKDIKGGR KGRKAHIDEVMASLRDQLGDQRDRLFLVGGSWRAIARLDMLRRNYPLTVQHEYRMTAK DVRETIKFIEQNDLEKLRSDCGVSSARMALVPYAIDVLARLIKTFRPKDIAISSYGIR EGLLYEQMPDRLRQRDPLIEAARFAEAKDARVPGFGKTLYTFVKPLFSGAPYAKMRLV KAACVLHDVSWRAHPDYRAEVCFDNATRANLGGLKHSERIFLGLALLHRYRNKRQGTH FEHLYDLLPSEKQKEAEILGKAMRFGAMLMVGEDQDIGRLRWQPRKRTLHVELPAESA ALFGEVAQSRLMSLVNTLKAEVRVSVAGRRGALLEKDARD" /product="phosphatase, Ppx/GppA family" /transl_table=11 /note="identified by match to putative ortholog SPO1117 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(199292..199732) /locus_tag="Silicibacter_215" /translation="MTLVRARYTWLMIQHRHITSRLGLALGVCLALAGPPLSAQEAPT ENNGADGPSLMERGMELFFEGLRREMEPTLEEAARLLSEVGPSMRSFLAEMGPALAEI ADQVEDWSVYEMPEILPNGDIIIRRKDPKPEPAPAPQPDDSIEL" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(199756..200790) /locus_tag="Silicibacter_216" /translation="MRLSTYNIEWFEALFDAQDQLQLDSAPSARHEISRGAQAEAIAD VLRAIDADGIVIIEAPNSGKHQSTERALVRFAEWAGLRTRDVVMGFANDTRQEIAFLF DSNVLTAEHAPLDTARAPRFDGTFEMDLDVDAKADLVRFSKPPMELLVTPRTGPPFHL IGAHLKSKAPHGARTPEEARAMSIANRRKQLAQAVWLRARVEDRLEAGAPLVVMGDLN DGPGLDAYEALFGRSSVEIIMGQELFDPHARHLLRPNQQGLPTSARFYNHLEGRYFQA LLDYIMISPPLQACAPRWRIWHPFEDAACYGTPSLCHALLTASDHFPVTLDLDLTQAS RPEDGGDLQI" /product="endonuclease/exonuclease/phosphatase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO1109 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(200771..201478) /locus_tag="Silicibacter_217" /function="COG: DnaJ-domain-containing proteins 1" /translation="MSIWTRITEALAALTQGESLAQVFDRLRTPPERTVGFTIAVIAL GAKMAKADGQVTRDEVAAFREVFQIAAEDEAQAARVFNLARQDIAGYDDYARRIRAMF SDDPETLCDLMEGLFHIAIADGFYHPNEDVFLEEVSRIFGQTDAQFRSLRARFVEDAP KDPHEVLGVSPGTPLEDIRRIWRRLVRDNHPDAMMARGVPPEAVQLAEKRMIDINRAW EEISGKAQARDHAPQHV" /product="DnaJ-like protein DjlA, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1108 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(201488..202021) /locus_tag="Silicibacter_218" /function="COG: Histone acetyltransferase HPA2 and related acetyltransferases" /translation="MAPRIRAARDGDTEAITHLQRHIIDTTLATFATEGRSLSDWQDD ILYGDPPILVAEAEDGQFLGYATYSGFRSSEGYRHTGEHSIYLTEAARGQGVGHKLLS ELENRARAAGIHVMVAAISSANPAAARFHARCGYAEVGRMPQVGRKWDQWLDLILMQK ILREQGTAPPDSAQRSR" /product="phosphinothricin N-acetyltransferase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1107 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(202021..202659) /locus_tag="Silicibacter_219" /translation="MSPRYAPRHKDIAMELDHFAIAAPTLSEATAYVEEALGVPLQPG GAHQVFGTHNRLLGLAEGLYLEAIAIDPEATPERQPRWFDLDRFEGAARISNWICRST DLEADLAALPVEAGTPVALTRGDLAWQMAVPATGCLPFDNVFPALMRWQGPHPAPRLT QQGCSLRRLVVAHPEARALAEMLPLRDARVVFELGPAALRAEIDTPHGLRHL" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1106 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 202852..203349 /locus_tag="Silicibacter_220" /function="COG: Lactoylglutathione lyase and related lyases" /translation="MNTPQTPEDWAAEHILGIYETHLPVRDLDRSLAFYTGQLGLKLA RRLPERDVAFLWTGPKEVGMLGLWGAGSAPLGMSLHFAFRATKAAVLGACTQLPAQGI TPLGFTGDPITEPVVLGWMPAISVYFKDPDGHSIEMLHMLEDAADPAFGVQSYSDWQN RASQA" /product="glyoxalase family protein" /transl_table=11 /note="identified by match to putative ortholog SPOA0321 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(203535..203654) /locus_tag="Silicibacter_221" /translation="MEEWFADRAAFDAHQLRAGASLWGQKTQGIRREYKVTED" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(203679..203831) /locus_tag="Silicibacter_222" /translation="MRDPAFKGRVYLSGHLFCASAQEQALVEQYLPEHIRLTRAEPGC LSFEVT" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note=", Dimeric alpha-beta barrel" /note="Hypothetical protein" CDS complement(203847..205976) /locus_tag="Silicibacter_223" /function="COG: Methylmalonyl-CoA mutase, N-terminal domain/subunit" /translation="MTQTPDDWRALAEKELRGRPLEDLTWQTLEGIDVKPLYTAEDTA ELGHMGTLPGFGPFTRGVKATMYAGRRWTIRQYAGFSTAEESNAFYRRNLAAGQQGVS VAFDLATHRGYDSDHERVVGDVGKAGVAIDSVEDMKILFDGIPLDQVSVSMTMNGAVI PILASFIVAGEEQGHDKALLSGTIQNDILKEFMVRNTYIYPPEPSMRIIADIIEYTSN EMPKFNSISISGYHMQEAGANLVQELAYTLADGREYVKAAIEAGMDVDKFAGRLSFFF AIGMNFFMEAAKLRAARTLWHRVMTEFGAKSDRSKMLRTHCQTSGVSLQEQDPYNNVI RTAYEAMSAVLGGTQSLHTNALDEAIALPTDFSARIARNTQLILQEETGVTNVVDPLA GSYYVESLTAELVDKAWAMMQEVEEMGGMTKAVASGMPKLRIEETAARRQAMIDRGEE VIVGVNKYRKDKEDPIDILDVDNVKVRESQIARLEQIRASRDAAACEAALAELTRRAS EGGNLLEAAVEAARARATVGEISMAMEKEFGRHRAEVKTLAGVYGAAYEGDEGFAAIQ KSIESFAEEEGRRPRLLVVKMGQDGHDRGAKVIATAFADIGFDVDVGPLFQTPAEAAQ DAIDNDVHVVGISSQAAGHKTLAPQLIAELKAAGAEDIIVICGGVIPQQDYDFLYKAG VKAIFGPGTNISTAAQDILELIREARS" /product="methylmalonyl-CoA mutase" /transl_table=11 /EC_number="5.4.99.2" /note="identified by match to putative ortholog SPO1105 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(205939..206892) /locus_tag="Silicibacter_224" /translation="MKVILHIGAHRCATRSFQNYMTRKSDTLSQYGIAFMGPERTRNG LLHGIQPGAISVTGRDPMARARGRIALQLAGLQNAGTASVVISDASMLQPLEQCFALG ALYPAAGEHLARLDHAFDGAVSDVMLNIRSPEMFWASALAVRLEHSLRMPNAATLSRI AEATRSWRDVIQDIYCAMPGARIRVFPYEVFATQPEAQLSAVTGVDCPHARGAFRLNA SARLPELRAELPPRLAKLLPEDEGRWMPFSEAEAARLRESYYDDMMWLVGGADGLAEL VEDPNKADATATPPAPDLVVQEDLTRGRMHDPDTGRLAGTG" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1104 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 207049..207573 /locus_tag="Silicibacter_225" /translation="MNRLQRLTLLAALTALPLAQSVSAQEAEGQSPAPDATLSEDAAP ADLSAEEAAPAFEIRDGYDVDIAEYQWTHRPVVVFADSPADPRYQEQIDELLQDIPAL MTRDVVVFVDTDPKARSALRKKLRPRGFMLVLLGKDGGVKLRKPLPWSVRELSRTIDK MPMRQREIEARREG" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1103 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(207692..208231) /locus_tag="Silicibacter_226" /translation="MSLPHPPSRPRRLLRAFAGVALAAVVTGSCSLDQEEQVRAQVQD WVKLGETYYFFSRVNCTAALFEVKASRISSKVKKVRDVEAGMRAISEEIAVAFEVEGL SPTEVTEEIMNRDLPMGIGVLSSGTGGKDCMAIEMEEAYFNALLDPTSALIYHPTAKF TVVFDRRNRRIFYSRGRTS" /product="lipoprotein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1102 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(208456..210486) /locus_tag="Silicibacter_227" /function="COG: Biotin carboxylase" /gene="pccA" /transl_table=11 /note="identified by match to putative ortholog SPO1101 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="propionyl-CoA carboxylase, alpha subunit" /translation="MFEKILIANRGEIACRVIKTARKMGIKTVAIYSDADRQALHVQM ADEAVHVGPAPANQSYIVIDNVMAAIKSSGAQAVHPGYGFLSENAKFAEALEAAGVAF VGPPKGAIEAMGDKITSKKIAQEAGVSTVPGYMGLIADADEAVKISNEIGYPVMIKAS AGGGGKGMRIAWTDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDAH GNGVYLGERECSIQRRNQKVVEEAPSPFLDEETRRAMGEQSVALAKAVGYASAGTVEF IVDGDKNFYFLEMNTRLQVEHPVTELITGVDLVEQMIRVAAGKELSITQNDVKLTGWA IENRLYAEDPYRNFLPSIGRLTRYRPPAETAAYTPGVAPGDAGDVVVRNDTGVYEGGE ISMYYDPMIAKLCTWAPTRDAAIEAMRAALDSFEVEGIGHNLPFLSAVMDHPKFVSGE MTTAFIAEEYPEGFDGVDLPESDLKRIAASCAAMHRVAEIRRTQVSGRMDNHERRVGN TWVVAIGGQTYELRVAADPEGATVRFEDQSEIRVSSDWTPGDSLAHVDADGTPLVLKV DKITQGFRVRSRGADLKVHVRRPRQAELAALMPEKLPPDTSKMLLCPMPGLVVKINVE VGEEVQEGQALCTIEAMKMENILRAEKKSVVSKINAAAGDSLAVDDVIIEFE" /EC_number="6.4.1.3" CDS 210796..211077 /locus_tag="Silicibacter_229" /translation="MPASRAEMSVLRIGMLLWVFQHVWLQMCQYDADRPDPLSTYHPH GREIARHIRVKGELSRKSGAHLRAAGGTNMSSQAQALRAGDRSEEAETV" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(210630..210833) /locus_tag="Silicibacter_228" /translation="MRKTLISALLAGTAALAACGDTTGEQVLYGAGAGAAGAALLNGS LVTGAAVGAAGNLIYCKENPGRC" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(211370..211717) /locus_tag="Silicibacter_230" /translation="MLKHRGFPGRLPGTDFQFVIRRPNPKGVTPITRRERFRDRKPAD RRADAGFMKALWENFGDQPFERGNLDAGRLSWLFGREVVAVDDPFDPESYESLLVIDV EVARRSFPEAFEG" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1097 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(211787..211930) /locus_tag="Silicibacter_231" /translation="MSKSIKFITLAGLLAAVAACAGQREEEFVVVEPEPISQEPVYTG KYK" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(212145..213068) /locus_tag="Silicibacter_232" /translation="MTSILRKITGLRKTTGHLRQNSSAFAGIAPDGDRKFAVCAQNGR CALLLHKNLTVFDTEAESVACSGSSRPSIARALGAAPAAPAGGAQSDWGRGCGNLVRA FIHLRVVKSVLAQSSGHGTAATPRSVLGSVFGTFGGAKPAPVTTRALRRAGVGLFTAR LQCALLLALVCASPLSQAHAASEGAEGADGGATASDEAQASLPVPSGQPVTLSEVLLD DAPGALWARFRFVAPEMAQMADQTTSLADMEHLCTAVAVPYLSYHDIKAERVVVSFSD QNLPFGQRAPDVTQYFETYRIEDAACVWEGF" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(213068..213415) /locus_tag="Silicibacter_233" /translation="MSARWHITRGAGGLTLSRQMPARFDVVASTTLPQGDPLRLAHQI RQDMWRKLQKVRGFSPVVQLTREGDVIRVEAGGRVAAPVAPGLSGEIADLLACPAHRA RWVAQATRSGRRL" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1095 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(214024..215556) /locus_tag="Silicibacter_234" /function="COG: Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta)" /gene="pccB" /transl_table=11 /note="identified by match to putative ortholog SPO1094 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="propionyl-CoA carboxylase, beta subunit" /translation="MKDILAELEERRENARLGGGQKRIDAQHARGKLTARERIELLLD EGSFEEFDMFISHRCTDFGMENNKPAGDGVITGWGTINGRQVYVFSQDFTVLGGSVSA THAQKICKIQDMAIQNGAPIIGLNDSGGARIQEGVDALAGYAEIFQRNIMASGVIPQI SVIMGPCAGGAVYSPAMTDFIFMVKDTSYMFVTGPDVVKTVTNEQVTAEELGGASTHT KKSSVADGAFENDVEALAEVRRLVDFLPANNREKPPVRPFFDDPARIEDSLDTLIPEN ANTPYDMKELITKVADEGDFYEIQEDFAKNIITGFVRLEGQTVGVVANQPMVLAGCLD IDSSRKAARFVRFCDAFEIPILTFVDVPGFLPGTAQEYGGVIKHGAKLLFAYGEATVP KVTVITRKAYGGAYDVMASKHLRGDFNYAWPTAEIAVMGAKGATEIIHRADLNDPEKI AAHTADYEDRFANPFVAAERGFIDEVIQPKSTRRRVARAFASLRGKKLANPWKKHDNI PL" /EC_number="6.4.1.3" CDS 215930..217123 /locus_tag="Silicibacter_235" /function="COG: Permeases of the major facilitator superfamily" /translation="MTRSTPPTIWTLILLSGLSALGMNIFQPSLPGMAAYFGVEYRLI ALSVPFYLAASTVIQIVVGPISDKMGRRPVMMVSLLLFLLATLGCIFATTAEVFLAFR MAQAVVATCMVLSRAAVRDMYEGPKAASMIGYVTMGMTVVPMVGPALGGILDQAFGWH ANFWLLFATAAVTLVIFYADFGETATASGKPLIAQFREYPALLRSPRFWGYSLAAGLS SGSFFAYLGGSPFVGTNVYGLNSAELGIYFSAPAVGYFLGNFLSGRYSERFGINTMVF WGAIVNIFGVGLSLSITLAGMDTVWTFFGLMCFVGLGNGMAIPNGTTGAISVRPHLAG TAAGLSSAIMIGAGAALSATASWLLVPGSNAAPLLEIMFASGCLGLVAILYVMRRERQ LGLAA" /product="drug resistance transporter, Bcr/CflA family" /transl_table=11 /note="identified by match to putative ortholog SPO1093 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 217303..218778 /locus_tag="Silicibacter_236" /translation="MGTVITSAACQSEFAVIQMNSAQFAKASHMATQKLYAGAKLREM RNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSSGDSER LISDMREAMADPVFADDVPPLADLRLTASNAPALARAFLSLHRAYRQTHERLASLDEA LGRADARIQASPWEEVRDFFHYCDNYIDAVDRAAERFSGSGDTRQNAETALQEIGVTL TLRDMEGLRAYDPDTKVLALSHRSAPQTRLFQMLLQLALLRYGDLLEATLDFAKFQTD EARSIAKIGLANYFAGAALMPYTRFLEAAQACRHDLELLSIRFGASIEQVAHRLSTLQ RPGAKGIPFFFVRVDQAGTITKRHSATRLQFARFGGACPLWNVHRAFETPGRFLRQLA ETPDGVRYISLARDVSKPGGSFGAPVRRYAISLGCEVSHADALVFADGLDVTQASAFE PIGISCRICERQHCHQRSVPPLERRLSVDTNERSVLPYRVN" /product="DNA-binding protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1090 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(218833..219072) /locus_tag="Silicibacter_237" /translation="MSHTPHELAEEFPEKAALMSELKQSDAHFAKLADEYHEVNRAVH RAETNVEPVSEQAENDMRKKRAALKDEIWGILAKA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1089 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 219385..219849 /locus_tag="Silicibacter_238" /translation="MVCFEPFTAIKRCSLARIMRAVSSMTDLYLTEPDFEAEITILTE EQRGRQTPPHNYIRWDFGYAEDNPLEPERNLDAEIYMIWPNFLDTEGTPIQKGIPLVG TYKAWMHILVREMVCYHRKRISVGLKFNCYEGGQIVARGVVTELRAISLNGN" /transl_table=11 /note="unique gene to TM1040, belas," /note="Hypothetical protein" CDS complement(219948..221603) /locus_tag="Silicibacter_239" /function="COG: Choline dehydrogenase and related flavoproteins" /gene="betA" /transl_table=11 /note="identified by match to putative ortholog SPO1088 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" /product="choline dehydrogenase" /translation="MNADYVIVGAGSAGCAMAYRLSEAGKSVLVIEHGGTDAGPFIQM PGALSYPMNMSMYDWGYKSQPEPHLGGRELVTPRGKVIGGSSSINGMVYVRGHAGDYN HWAETGATGWSYADVLPYFKRMETWDDRGHGGDPDWRGTDGPLHVTRGPRDNPLHDAF VKSGQQAGYPVTKDYNGQQQEGFGPMEMTVHKGRRWSAANAYLKPALKRDNCDLIRAL ARKVVIEDGRAVGVEVERGGKIEVIRANIEVILAASSLNSPKLLMLSGIGPAAHLAEH GIDVIADRPGVGQNLQDHLEFYFQFASKKPITLYKYWNLFGKALVGAQWLFTKTGLGA SNQFESAAFIRSDKGIDYPDIQYHFLPIAVRYDGQAAAEGHGFQAHVGPMRSQSRGEV TLASADPNAAPKILFNYMSTEQDWIDFRKCVRLTREIFAQDAMKPFVKHEIQPGTDLQ TDEEIDGFLREHVESAYHPCGTCKMGAVDDPMAVVDPECRVIGVEGLRVADSSIFPRI TNGNLNGPSIMTGEKASDHILGRRLPSSNAEPWFNPNWQTSQR" /EC_number="1.1.99.1" CDS complement(221760..223217) /locus_tag="Silicibacter_240" /function="COG: NAD-dependent aldehyde dehydrogenases" /gene="betB" /transl_table=11 /note="identified by match to putative ortholog SPO0084 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="betaine aldehyde dehydrogenase" /translation="MTHPAQPKASHFINGEYVEDTSGTPIPVIYAATGETIATVYAAT PAIVEQALTAAEAAQKEWAKMSGTERGRVLRRAADIMRERNHELSVLETYDTGKPLQE TLVADATSGADALEYFGGLAGSLTGEHIQLGEDWVYTVREPLGLCVGIGAWNYPTQIA CWKGAPALACGNAMVFKPSETTPLCALKVAEILMEAGAPAGLYNVIQGMGEVGGKLVT DPRVDKVSLTGSVPTGKKVYAAAAEGMKHVTMELGGKSPMIVFEDADIESAISGAING NFYSSGQVCSNGTRVFVHKDIKEKFLARLAERTATAKLGDPMDESVNFGPMVSERQME IVLGYIEKGKSEGARLICGGNRADMDGFFVEPTVFADVKDDMVIAREEIFGPVMCVLD FESEDEVIARANDTEFGLSAGVFTKDFTRAHRVIGQLEAGSCFINSYNDAPVEAPFGG VKASGVGRENSKEAIKHFSQVKSVYVRMGDCEAAF" /EC_number="1.2.1.8" CDS complement(223421..224629) /locus_tag="Silicibacter_241" /function="COG: Choline-glycine betaine transporter" /translation="MTYLISAGILLAFALVAFCVIKWWNLEVVGVTPVPLFTFIAILF TSGLDVGLVMFPLAWDFPLYADTATEPAYGFTNPLALEFGFWGFLIWGFYFLTTFYFC VIEPRVKFFEIPVVKWINNIVIIGTCAFTGALFLIYLPYYATFMGDGETVIPAFYVIT FLVILFAAFSSTDIKYVRILSLGSTGLFALLILGMWAYSGMGLGEFAGTASNIGGYFA NIHKFVLPLTDYHEFYLFWWFAWSIMIGQFTSRFVGGLKTWQVLAALLIFPSIPLGVW FSVLYYYHLNEIPTTLVINISMVVVGVIFVINSFDSLIRLYTDNLNLTSKRFGKLPYI LGNAVVLFALTVAFQSQWLQIQWIGAVVIGLYVACLIYIFVNKREEVMAIKASPEEND LDFSKIETVH" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1087 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 224827..225417 /locus_tag="Silicibacter_242" /function="COG: Transcriptional regulator" /translation="MARKRIRDIRNEELIEATIITVHKRGYGTVTMAEIAREAGASAA SISYYFGSKEGLMEATMRHLLRKLRKAMVEGYAQARSPLERLYAVMDANFADSLYSVP QCSIWMQFWANAPYSPSLARLHRINRARVRSHFVAELSQLVPADQVETARQALQSYMD GVWLQAAQSEQPLDTEAARTAAHRVVDLVTSRALAA" /product="transcriptional regulator, TetR family" /transl_table=11 /note="identified by match to putative ortholog SPO1086 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(225493..226566) /locus_tag="Silicibacter_243" /translation="MSFPAVRRLCLLAATLALPSAGQAALDLCNDTTAAQRVAIGFQE AGDWTSKGWWDLPAGSCTEVLSSASTSRFYYLRVETEGWAFTDDRLGFCVADTDFEIK GEDGCARRGFRQENFARIDTRGAAAPDPTAQTRPAADPDTGSDAARRTFTHHLSAHLT PIKSDVPARHVVQSGFSTKAVFQGCDAETTAYASFCTFIGAGRRYLVYDDGRTSAALW QEIQQAIRGRRYTLEGLREDLFDTTSELVLRAIRPEPEDRSDQLLASLQGLWRSTIDP NDSFRVSGAERINAYAGAETSVEYLSLHKPCAEAGDVGPFLFTWDNNSGTSLCYAIAR LTDTELALIYLPRGTELVYRREG" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1081 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(226684..227853) /locus_tag="Silicibacter_244" /function="COG: Permeases of the drug/metabolite transporter (DMT) superfamily" /translation="MDRVFLCWLRPELYAPLSQRQAPIDATSRQAESRLPGRRQCWAP RSCRSGRRTIASLKGVQYFTSEGLSCRRNRCLFARMSDVSQTKAPATEPTSNPMRGVF WMLVTGLNFVAVTALVKYMGPRIPPAESAFLRYLLGLVFLIPMIRSIKAVEWTSQLHG LFALRGAVHALGVIMWFFAMTRIPLAEVTAMNYLSPVYVTLGAAIFMGEKLAFRRIAA VGVALLGVVVILRPGFREVSPGHLAMLITGFAFGLSYLLAKTMVGRTNPTVVVAMLSI WVTIGLAPFALANWVTPTLFELALLFGVACFATAGHYTMTLAFASAPLTVTQPVTFLQ LIWATLLGALAFGESVDVWVVVGGTMILGAVTFITWREAMVKRRAITPAPHATKS" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1080 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 227910..229547 /locus_tag="Silicibacter_245" /function="COG: ATPase components of ABC transporters with duplicated ATPase domains" /translation="MSSPSACVLLDGLRWSAADARPLFSDLTLHLQSGRMGLVGRNGS GKTTLLRLIAGDLPPEGGRVQVSGRLGWMRQEVASAAHLTVADLFGVAPALARLRRIE RGVATDTDLAEADWTLPARIEAALQRCGVSVAPEEPLAPLSGGQRTRVALAAQIFQAP DILLLDEPTNTLDAEGRAMVRRLLRDWRGLALVVSHDRAVLEEMDAIVELRAGGAQRY AGPYSQYRAERDMELAAAYQDLHEAEKTRKETMRRAQDATERKARRDSQGRAARASGS QPKVLLDKAKERAEASKGAGVRLREARRTEAEAALADARERIEVLEPIQMEIPATGLR NQTRLVALQHITAGYGPHTVLRDFSLEITGPERIAVMGPNGCGKTTLLSLILGHLEPH AGHITRPAEAALLDQHLSLLKSDETLLENYLRLNPGVGAQDAHAALARFRFRASEALW QAAALSSGQRLRAGLACTLARPTPPPLLVLDEPTNHLDFEGLEALEAALLGYDGALIV VSHDSAFLDRIALTRRLVLPSQRSGSGINSLSSPGGS" /product="probable ABC transporter, ATP-binding protein" /transl_table=11 /note=", ABC transporter related, ABC transporter, cbiO: cobalt transport protein ATP-binding subunit" /note="Hypothetical protein" CDS complement(229496..230437) /locus_tag="Silicibacter_246" /function="COG: Pirin-related protein" /translation="MSWNPTLEPMCPEAGNLDSIETLVVPRARDIGGFEVRRALPAPR RQMVGPFIFFDQMGPAEFLTGAGIDVRPHPHIGLGTVTYLYQGEFEHRDSLGTHQMIY PGEVNWMVAGNGVTHSERTSEATRKGQSSLFGIQTWIALPENKEDMAPVFEHHGKEAL PHLLGEGKEVRLILGTAWGETAPVTMHSETFYADVILEAGAKLPMPDNHEDRGLYITR GAVEIAGQTFGAGQMMVFRPGDAITVTAGPEGARLMALGGETMGGPRHIWWNFVASSK EKIEEAKQAWARGDFASNPRFQLPPGDDSEFIPLPER" /product="pirin domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO2601 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(230530..231159) /locus_tag="Silicibacter_247" /function="COG: Putative threonine efflux protein" /translation="MQPLPMTPDMLPILMAGFGLGFSLILAIGAQNAFVLRQGIRGQH VLPIVLTCALSDALLITAGVAGFGTLTSALPWFEPVMRIGGALFLTGYGLRSLRSAWT GGAALSTEGQGVQTALWPAVLTCLAFTWLNPHVYLDTVVLLGAISAQYTPAWVFGLGA VTASFVFFFTLGYGARLLAPIFARPRAWQVLDALIGVVMLALAVKLALM" /product="L-lysine exporter, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1079 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 231269..232189 /locus_tag="Silicibacter_248" /function="COG: Transcriptional regulator" /translation="MRYDPLQLAALSAVLDLGSFDAASAALGVTPSAISQRIKALEDR IGTPLVNRSSPCTGTETGLRIAKHAEDVALLERRLSRDLSLEGAETPARLKLAVNADS LATWFVEAMVAAGDVLFDLVIDDQDHSTDWLRRGVVSAAVSAEPRPVAGCDVHALGHL RYVATASPAYMARWFPGGVTPETASVAPCMVFNAKDRLQHRWLARHVAPGLTPPSHAL SSTQAFLDAAAAGLGWGMNPETLAEPHLASGALVELIPQSPLETPLYWHVSRIMAPAL VEITQAVRRAASANLHPPPKASNARAGRGG" /product="transcriptional regulator, LysR family" /transl_table=11 /note="identified by match to putative ortholog SPO1078 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 232210..233067 /locus_tag="Silicibacter_249" /function="COG: Protease subunit of ATP-dependent Clp proteases" /translation="MLSVPHLPKGSFAHSVWLHLVLPRAAVLAALWAMNQSLQLPIWL VYPAAVLDAGFLVWQLWRYHQAAEAHIRDTGAMAPSWGGYLLCLLALLSSATLWWDTV LIANMPPPEEQHSEQMRRAREALYQLTLSADGRTVQFEGEITYGLKARLAQIVENAPD LRVIHLGSPGGHVFEARGAAQVIMGAGLETTVSEACSSACTLLFMAGTRRHLDPQARL GFHGYGLSEWVHLPGYDIDAAQEKDRVFFLAQGMQPGFAARIFDRPPEEMWYPDHAEL RAAGVLTSP" /product="hypothetical protein" /transl_table=11 /note="Hypothetical protein" CDS complement(233306..234046) /locus_tag="Silicibacter_250" /function="COG: Uncharacterized conserved protein" /translation="MAGHSKWANIQHRKGRQDAARSKLFSKLSKEITVAAKMGDPDPE KNPRLRLAVKEAKSNSVPKDVIDRAIKKATGGDAENYDEIRYEGYGPNGVAVIVETMT DNKNRTASTVRSTFSKNGGNLGETGSVGFMFERKGEVTYPASVGDADTVMMAAIEAGA EDVESSEDGHVIFCADTDLNEVSNALEAELGESESTKLIWKPTTTTELDLEGMQKLMK LVDALEDDDDVQRVTTNFEASDEVMAQL" /product="conserved hypothetical protein TIGR01033" /transl_table=11 /note="identified by match to putative ortholog SPO1072 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 234297..234392 /locus_tag="Silicibacter_251" /translation="MAWIKGRAATYQGESVPEILGATHRASQIMP" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 234508..236283 /locus_tag="Silicibacter_252" /function="COG: Na+/H+ antiporter NhaD and related arsenite permeases" /translation="MTLDQTLLFGLFATVFGLLLWGRFRYDLVAFGALMVAVVLGLVK AEDAFAGFGHPATLVVALVLVVSAGLVKSGAVHLITRTLVDQSRALGAHIALMGSVGA VLSAFMNNVAALALLMPVDIQTARKAGRTPGQSLMPLSFATILGGMATLIGTPPNIII ASIRHDTLGEPFKMFDFAPVGLAAAAAGLAFVALVGWRLIPDRSGAAGATESQLAPYI AELTVPEDSDLIGQRLGSLDPEAEKADVAILGLIRGGQRRYGRAAGALLQAGDTIVLE ATPDALDEFRATLKLDFSDAAREEKLKAAGEGLELIEVVVPEYSRIAGRSAQGVGLAW RQSAVLLGIARQGERLTKHLRQTEVAPGDILLILCPRDRGAEVAEWLGCLPLAARGLS VTANDKTWWAIGLFAAAVLAASVGLVYLPVALGLVAIGYVLLKILPVAEIYDHVEWPV VVLLGSMIPLGQALETSGGTELLAHGLVELTTGLPAWAILTVLMVVTMTLSDVLNNTA TAIVAAPVGISMAQALNVSPDPFLMAVAVAASAAFLTPIGHKNNTLVLGPGGYKFGDY WRMGLPLEILVIAVSIPAILFFWPL" /product="trkA-C domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1076 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 236488..238161 /locus_tag="Silicibacter_253" /function="COG: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit" /translation="MAAAQRDNHADVIVIGAGLAGLVAANELADRGKRVILLEQEPAH FIGGQAHWSLGGLFMVDTPEQRRMGIRDSLDLAQRDWAGSAQFDRPEDQSPRQWAKAY LEFAAGDMRAWLHDLGLRWFPVVGWAERGDGRAEGHGNSVPRFHITWGTGPGVVAPFA QRVHAHVATGRIDARFRHQVSHIIQQGGHIKGVSGEVLADDQGPIGAQTNRHEVGEFE VYAPSLIVASGGIGGNLEMVRENWPTERLGPAPSRMVSGVPAHVDGRMLKVAQAAGGH IINGDRMWHYCEGLRNWDPIWPNHGIRILPGPSSLWFDAHGTRLPDPALPGFDTLGTL KAILASGQDYSWFILSQKIIQKEFALSGSEQNPDLTSGTWAEVLRARIFSGGKAPVPV EAFKKHGADFVVAETLSDLVRGMNEIADVPLDEAHIRAQIEARDAQVDNPFAKDRQIQ AIHAARNYRGDRLIRTAKPHRLLDRANGPLIAVRLSILTRKTLGGLHTTLESQMIGAD GAPLPGLFAVGEAAGFGGGGYHGYNALEGTFLGGCLFSGRQAGRSDQIA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1070 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 238193..238666 /locus_tag="Silicibacter_254" /function="COG: Uncharacterized protein conserved in bacteria" /gene="ybiA" /transl_table=11 /note=", ribofla_fusion: conserved hypothetical protein" /note="High confidence in function and specificity" /product="hypothetical protein" /translation="MTPPSPDTIYFYAQTDPYAEFSNFAPYGVCFEDIWWPTVEHYFQ AMKFHDAAYRTRIRRCQKPKDAKALGMTRKIPLRADWEEVKDDIMYAAVLCKFRTHGA PRQLLLGTGDAPLVENAPMDAYWGCGPDGLGLNKLGRILMRVRGELAEDAAALNR" /EC_number="3.5.4.25" CDS complement(238760..239224) /locus_tag="Silicibacter_255" /function="COG: Heat shock protein" /translation="MMTTRRAFIAAVLVAASAIVMGAQTRATEPATPPLTDTQWTLSE IEGKAPLEGRDLDLIFFEDGRFGTSAGCNRFMGEVEIEGDEITFPDKIAGTMMACPEG LAEQEEKLLSLLSEVTHYQIEPDALILMDSDGQALLRYSREVEEEGLVETSG" /product="hypothetical protein" /transl_table=11 /note=", Protein of unknown function DUF306, Domain of unknown function (306)" /note="Hypothetical protein" CDS complement(239342..241120) /locus_tag="Silicibacter_256" /function="COG: Na+/H+ antiporter NhaD and related arsenite permeases" /translation="MFLFQSGDTTSAIIALLIVLAMFVAFLRETYPTEVVAICGVSLM LITGVLPYAEALPVLANPAPWTIAAMFLIMGALVRTGALDAFTSVARKKAEVSPKMAI ALLMGFVVIASAFVSNTPVVVVMIPVFIQISRTLNVSPSKMLIPLSYAAVLGGTLTLI GTSTNLLVDGVARAQGLAPFSIFEVTPLGIVVVVWGLIYLRFIAPRLLPERDSMAMML SDRSKMKFFTEAVIPPDSNLIGREVTGVQLFKRPGVRLIDVIRGDDSLRRNLQGVELQ VGDRVVLRTQMTELLSLQRNKELKRVDQVSAVETKTVEVLITPGCRMVGRSLGAMRLR RRYGVYVLAVHRRNQNIGVQLDDLVVRVGDTLLLEGAPGDIQRLAAETDMADVSQPTQ RAYRRSHAPVAVAAMVGIVIAAAFGLAPILMLSILAVALVLATRCIDADEAFSFVDGR LLALIFSMLAIGAALESSGAVELIVNAISPALVDLPPFFLVWAVYLLTSVLTELVSNN AVAVVVTPIAVGLAQAMGLDPRPLVIAVMIAASASFATPIGYQTNMLVYGPGGYKFSD FLRVGIPLNLSMGLLASAVIPLLWPL" /product="trkA domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO2952 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(241187..241315) /locus_tag="Silicibacter_257" /translation="MKGLRFRGVMRGSAHPPVTQVPISPHLPNFADTIACCTAFDR" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 241402..242295 /locus_tag="Silicibacter_258" /function="COG: Beta-lactamase class C and other penicillin binding proteins" /gene="adP" /transl_table=11 /note=", Beta-lactamase precursor (EC 3.5.2.6) (Cephalosporinase)., Beta-lactamase, Beta-lactamase" /note="High confidence in function and specificity" /product="alkaline D-peptidase" /translation="MTPDRPVFTHRLSASGSDSPRADAGEIFPYWSFTKTVIAICALR MVQDGRLDLDAPLAGFDFSLRHLLDHTAGLPDYFTLPAYGAAVAQNEEPWSAEALRAA TMAQGRLFAPGTGWSYSNLGFMVARDLLEEVAGQSFSDLLQQLICAPLELRSITLAQT RRDFERVHWAAAKRYHPGWVYHGCLTGTAADAARLLQGLFEGTLLDAEMLREMRKSHP LGGVIEGRPWTECGYALGLMSGRAGEAGRMIGHSGAGPFSVNAVYHFPDLSPPVTVAS FTDGTLEGVAEHAAVAAALSA" /EC_number="3.4.16.4" CDS 242328..242465 /locus_tag="Silicibacter_259" /translation="MAHEDVPPLGIARANLLAVTFHFEDRKAAPADPRHSRCFGPVAA K" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(242847..244157) /locus_tag="Silicibacter_260" /function="COG: Glycine/D-amino acid oxidases (deaminating)" /translation="MTLNLLHANDRPGKYPQSWYAATATPGVHYPSLTGGVRADVCIV GAGYTGLSAALHLAEAGRSVVLLDAQRVGFGASGRNGGQLGSGQRQDQEVLEKMVGAE DAAHLWRLGEEAKDLVKDLISKHQIDCHLKPGVAWTAERSGDVTHLHDYGRHLEDRYG YDQIEFLDQDACHAMCPSPAYKGGILDHGAGHLHPLNFALGLARAAAEAGAQIYERSE VFAIEDGPQVEVRTGEGTVRADHVILACNGYLGGLNEQVATRVMPINNFVAATEPLGD DAAQVLARDVAVADSKFVVNYFRLSHDKRLLFGGGESYGYRFPSDIAAKVRKPMTEIF PHLHDVKIDYAWGGTLGITMKRLPYLARVSPRILSASGYSGHGVGTATHAGRLLAEAI AGQSEGFNTMARIPTTPFPGGPRMRSPLLVLAMTWFSLRDRLGI" /product="oxidoreductase, FAD-binding" /transl_table=11 /note="identified by match to putative ortholog SPOA0209 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(244268..245635) /locus_tag="Silicibacter_261" /function="COG: Glutamine synthetase" /translation="MPTPTRWQEKLPEAATTYLEGRRLDEVECVISDLPGIARGKAVP ASKFAKQDYFYLPDSIFYQTITGDWAEAADEDGWIEKDMLLRPDMSTATAAPWTGDWT LQVIHDAYDRDGNPIPFSPRNVLKHVVSLYEAQGWKPVVAPEMEFYLVARNVDPARDI QPMMGRSGRPAAARQAYSMTAVDEFGPVIDDIYDFAEAQGFEIDGITQEGGAGQLEIN LRHGSPVKLADEVFYFKRLIREAALRHDCFATFMAKPIADEPGSAMHIHHSVIDIESG ENIFSGPQGGETDAFYHFIGGLQNHLPAGLAVMAPYVNSYRRYVKNHAAPINLEWARD NRTTGIRVPLSSSASRRVENRIAGMDCNPYLGIAVSLACGYLGLMEERRPTRQFKGDA YEGEGDFPQVMGQALDLFDESKALHEVLGPEFARVYSTVKRAEYEEFLQVISPWEREH LLLNV" /product="glutamine synthetase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO1300 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(245635..246315) /locus_tag="Silicibacter_262" /function="COG: GMP synthase - Glutamine amidotransferase domain" /translation="MKIGILQTGHAPDELKPTSGNYDAMFRKLLAGHGFSFDTYPVLD GVFPEGAEAADGWLITGSKHGAYEDHDWIPPLEDLIRQIHARKMPLVGICFGHQIIAQ ALGGKVEKFSGGWSVGHTQYRLHGAPVELNAWHQDQVVTRPAEARVIGESDFCANAFL AYGDHIWTSQPHPEFENTFVDGLLRTRGKGVVPDAQLNAAEASLDRPTDSTQIAQEIA DFFKKVRT" /product="glutamine amidotransferase, class I" /transl_table=11 /note="identified by match to putative ortholog SPO1301 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(246371..247690) /locus_tag="Silicibacter_263" /function="COG: Glutamine synthetase" /translation="MDLSALKTIRIAACDLNGQMRGKRLPAGMAAKLGEGSARMPFSV LNVDIWGRDIEDSPLVFETGDADGILLPTKRGAVPMPWLATPSALVPMKMVHEDGRPF LGDPRQVLAHVLDRYAEKGWQVAAATELEFILVDDAGTEPLPPIDPLTGRALDQQSVL SIAELDAYDDFFTDLYDGAEAMGIPAQDAISEAGLGQFEINLTHQDAMRAADDTWLFK ALVKGVARKHGFAATFMAKPYAEESGNGMHVHFSVVDKDGVNIFDNGGPEGTPALHAA VAGCINAMRDSSLVFAPHGNSYDRLVPGAHAPTSAAWAYENRTAAIRIPGGSPKARRI EHRVSGGDINPYLMLATVLGAALIGMEDGATPPPPSEGNIYDIDGLPQLAGSWAEAID LFENSPLIARILPPMAIRNLVMTKRQELKGFAERPPESHWLSWLEAV" /product="glutamine synthetase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO1302 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(247810..248544) /locus_tag="Silicibacter_264" /function="COG: ABC-type multidrug transport system, ATPase component" /translation="MTAHSARPRIAILTSHGQPSAPPPPEIHLAAVAAAVQDHLPDWE VRSATLSSKGFLEAAMREDGAVIYPFFMARGWFTGKVLPGRLKGWRYRMATPFGLDPA LPALTVAAIRSALHARGWKVAESEVLLAAHGSARGPKAAEAAEAFASTLRAQMPELRL TTGFVEETPFVAEAARNCGAQSLCLPFFAQTGAHVREDIPAALAEAGFEGDLLPVLGA LPGVAKLMADAIERAAETELSSPPAA" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO2745 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" tRNA 248885..248955 /locus_tag="Silicibacter_58" /gene="Silicibacter_58" /description="RNA" /note="Created by Search for RNAs Autoannotator" CDS complement(249259..251862) /locus_tag="Silicibacter_265" /function="COG: RTX toxins and related Ca2+-binding proteins" /translation="MPTIYDSFADTPGSAVRLDVGSPYEVRLTQAELDAAATFGNPEY DYFEFYADPFTTYTVQVIAANDAIDQSLWLPSPTWPGYNTEFGFSAPDGTMVTLEDGY SVRNWDPGDRLITTLYDGGLVRMAVRFDGWLQEYRTGEDLSDLPGSDRSFFIRIVEGD VAGTQPQIDTVGTGPDALEVSPEDASGIITGELEDLEGTPDVDEYLFTLRAGFHYDVV VRGATGAQSGESPGVFRVTVSEENGASSWTLESDVDRMSTGDVEQTITSVRIGDGFGS LLLEPGEEIDVRVSIQSIYDPNREVSPYQTGGYSVGGYEIEILPTDDDHGNNRLTPST ISVGGWQSGTLNPYYEISAAEPFGDRDWMEIVGGVEEGRYYVASFDYSDGRPFSMFAS FHNSVSTETVRAPDYAIWQPNYTGAAWLEVDSNFIGSADWRVSLGSYETLELGNRSDE RLTGTAGENFLDGRGGADLIVGRGGADQLIGNGGNDTIKGGGGHDILSGGAGKDVLKG NGGNDALNGGGGRDKLIGGRGNDTMSGGDVRDVLKGGGGNDVLDGGEGRDKLIGGSGN DTITTGFDGDVVRAGSGIDTIIIAGPEGDRDLRIRGTMDDGDILDLSALNIDSYFVED SFAGGGASSVRTRGDGLGYDIDFDGDGIGDRSIFFDSSEDADLVDLEGVAVRTPATYY EYLAETLTPLEWTPTRERYVLDSYGTFQYDLISGTSGADLISNDGRADNYLYRGQVRA GAGDDIIDMQLHSSLTYYGGTGDDYFVWQPPVDPNYALWIRLNDFRQYGEEDYIVVRS DIWGEGVSIDNITFDRMRSDGDYLEAHIVGTNGLEGTISVTQPFRSSDPLRNNDATSA DFLNVDAFIFV" /product="Hemolysin, plasmid." /transl_table=11 /note=", Serralysin-like metalloprotease, C-terminal" /note="Conserved hypothetical protein" CDS 252222..252689 /locus_tag="Silicibacter_266" /translation="MKRFALTTAAISALMAAPAMADLNTAAAQTFTEMKEAYPAIDRK IFEQVDVNKDGVADMAEVDAAEQSGVLNDDMSAAEATGTYDPSPYGVEEAGALTFAEL KDAYPSLTKKVFEEVDANKDGVADMAEIDEAELSDVLEPGIGNTAEGQSYNQG" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(252925..254601) /locus_tag="Silicibacter_267" /translation="MYNTRIARITGKVSIPCVLLGLLCFAASLTPSLIPRGPMAQGIL GGLVMAIGYLIGHIVGLLWRAADLPRLPRRAERGLTQVIAIVLAGVFLWVLGSSLRWQ NDIRAKMGMEEADALQLATILVIALATFTLAFALGRLVAALFRLIRSWFYRIMPPRRA NVLGVVAVVLILFLGTRDGIIDRLVTGLDESYEAAQELFDKAPPPPAAPHLTGSAASL VDWASIGKPGRDFISSGPTAEDISAFTGQPARDPIRVYVGRASAETPEARAELALAEL IRQDAFARDVLIMTSPTGTGWMDPGSHDPVEYMHGGNIATVAVQYSYLQSPLALILET RTGLEQATALQDAVHGYWKTLPADARPRLYAHGLSLGAWSSMHATNMFRLLNDPIDGA FWAGPPFPSTFWNYVQNRRNPGTPWVLPEIGDGSLVRYASHTADASEAAAEWGEMRIV FLQYSSDPVVFYDPRSLWRAPPWMRDPPAADMTEHFIFMPVVTQFQLALDIALSFGAP PGHGHAYYARDYIGPWLQVTAPRDWSPEDTARLIAHCNTGFQQGCANARR" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 254841..255932 /locus_tag="Silicibacter_268" /function="COG: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)" /translation="MKTFLPAVARSISVILCLGGPFGVIPAPLAAQSEAQSEAQSETQ SEIEVAEFPYVTLRNRTGSDDPAEFYAGERSDPKAGRCRVEELDLGVLAPLAGVAPNF LREELLRVQAIEEAPTGAILDQLEATAGAQGPALYVHGYYISFEKGCRRAALLQQNAD LEGRLLWFSWPSDGAAAYYTHDEVDLYWSLPDLADTIIELHERFGPGEVAVMGHSLGA RGVVLALAEVANRRPDMQLGQVVLLAPDMDFGIFERILPRIRPIAENLTIYVTSGDRP LALSAQVHGYPRLGEAGNPVSRLTGVEVIDLSDLPSEGPTGHLYHIYSQIVGADLSRL LRSGEGASERPGLVAQSKNLWRLRPEKRE" /product="hypothetical protein" /transl_table=11 /note=", Protein of unknown function DUF900, Protein of unknown function (DUF900)" /note="Hypothetical protein" CDS complement(255985..256482) /locus_tag="Silicibacter_269" /translation="MSDGTTSGWQRFDKAAFGIIYGAIMVLSIMLAQGGHPTPPLETA IVLFGSVLAITLAKAFAELLSHALDTRERMTRGSWRAAWHHSTPTLAVANVPTALFLA AWQGWIGEETALFLSQVMCVTLLALLGGRAGWVLDRRLLPALLGAGFAGGVGLLLANL KHIIH" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(256712..257572) /locus_tag="Silicibacter_270" /translation="MFRSVAIKAIFSIAAFASSVSALEFRITASGLDKDRHSYELELM ELALSKADGDHTLTLVDPGNSNQTRLLAQLAAGSEEFDVIFSGVSKERYESLTIVPIP LQRGLLGHRILISNEDSLPALQTVETFEDLKKIRIGSGTGWPDTEILESAGLNVSAAA YENLFTMTDKGRVQGYARGVAEPFAEVTKRSESHPNLRVDSSLMIVYPFDTFFFTGPE DQERADIILQGLERAYEDGSFMAHFNSHPNIQSVFEQAQIDNRLRFDIPNPLLPEEIS NLPDHLWHGR" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 257998..259800 /locus_tag="Silicibacter_271" /translation="MARGAVQNTASNEERETSRRIGVLKALWPFMRPYRGLIFAALAA LTLTAGVSLSLPLAVRRVVDNFRITDAALLNQYFTAAMIMAALLALGTGIRYALVTKL GERVVADIRKAVFDRIIGMSPAFFERIMTGEVLSRITTDTTLIQSVLGSSASIALRNL LIFLGGLVLMLLTSAKLTAMVLLIVPAVIVPILFLGRRLRVISRENQDWIAASSGNAG ESLGAVQTVQAFTHEDLSRAHFSEMTETSYEVSKRRIQTRALLTVIVIFLVFSGVVGV LWIGANDVRFGSMSEGALVQFVIYAVMVAGSVAALSEIWSELQRAAGATERLVELLQA EDSVRDPEVAQVLPEPVRGELTFDTVSFTYPSRPDVSALDQVSLTIAPGETVAFVGPS GAGKTTIIQMIQRFYDPQSGEVRLDGVPLQALARDDFRRHIALVPQDPVIFAATARDN IRFGRPDASDAEVEAAAKAAAAHDFIMKLPEGYDAYVGERGVMLSGGQKQRIAIARAI LRDAPVLLLDEATSALDAESERLVQAAFEDLSRDRTTIVVAHRLATVKKADRIVVMDQ GRIVAVGTHESLVAEGGLYARLARLQFTDGQAQG" /product="ABC transporter ATP-binding protein" /transl_table=11 /note="Family membership" CDS 260110..261996 /locus_tag="Silicibacter_272" /function="COG: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II" /translation="MAFATVADVAAIEQECTWQERDIPRTLYGLLSRTAERFPNNPAV SYQIFSGPTDKAETLTWRELKAKTCQAANLFRSLGIGEKDVVAYVLPNSNETLITLLG GAVAGIVNPINPLLEPEQIASILRETGAKVVVTLKGFPKTDVPQKVAEAVAHAPNVKT VLEVDLNRYLTPPKSWIVPLIRPKVNKAHAHADYKNFNRELAKQPTELAFADSEGDRV ACYFHTGGTTGMPKVAQHTYEGLIYNGWLGHTLLFSEEDNIMCPLPLFHVFACHVIVM AAVSSGAHVVFPTPQGYRGEGVFDNFWKLCERWKITFIITVPTAISAKMQRPVNADVS TVKTAFSGSAPLPLELFRRFEEATGITIVEGYGLTEATCLVSCNPVEGEKKVGSIGIP FPYCDIKIVKGTPEGLQECGADEIGEICVQTPGVFAGNTYTETDKNIDLYYQDTHLRT GDLGRVDPDGYLWITGRAKDLIIRGGHNIDPADIEEALLGHDAVAFAGAIGQPDAHSG ELPCAFVELVDGASATEQELLDYCKRHVRERAAIPKHMTILPELPKTAVGKIFKPDLR RHAITRIYDGALKDAGLAARVTSVSDDKKRGLVAQVSLNGSDTAAVGEVLSVYTRPWE EAKG" /product="AMP-binding enzyme" /transl_table=11 /note="identified by match to putative ortholog SPO3003 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 262115..263062 /locus_tag="Silicibacter_273" /function="COG: Esterase/lipase" /translation="MSETVNVMDYEKLIDEETWNFIRETGRHYPDDTVDLTIDDQRAV YNKMAAAFRKPRAEVVDVTERSVGRVLVRIYEAGDPTRTVMYCHGGGFVVGDLNSHDD VCSEICEQTGYRVVSVDYRLAPEHKHPAQFEDAWTVLDWICETYPGGVVLAGDSAGAM LSACVAHHARGRHEGVLGQVLIYPGLGGDHALPSYREHAQAPMLTLEDVKYYADVRAD GTPVENDPTYAPLQDDDFAGLPPTVMFSADCDPLRDDCLVYRDAIHAAGGLAEWINEA GLVHGYLRARHSVGRARDGFERIVLAIEGLGQEIWPYDD" /product="lipase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3002 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(263112..263672) /locus_tag="Silicibacter_274" /translation="MKYFLALLAMAAATPALADSYCDDLWFTRNAIMDRAGYCFGSSL GKHVFDNGDCIGTSVTLSEMDATRVAKLKAQEREAGCRVDTSRSRLDVLDLRYRQRLV DLPVTDGLESTCIGWRGDPLPLRAGHGLNTDVIGQVLPGDTLNYGHYPVGGWSYVTVH DSDWHLKSAGWYRVDAYPQRCAQFAG" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3001 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(263716..264321) /locus_tag="Silicibacter_275" /function="COG: Uncharacterized proteins of the AP superfamily" /translation="MCFPKCARPAAPPGAVAHSFWSEFFNRSPFDYVRDIEYDEPESK TINHGRFHSMTGYGHDNQMTPSDVDLFATLTNLCGRFDLDYGMLHTCTLDSMGHRFFH ESAEMDKACFVMDEMLAPFIPRWRAMGYEVIVTADHGQDERGHHGGRHPLQQETALYY FGDADGPAENDVIDQLQLAPTILSRLGAPLAETMKAEAFLR" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3000 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(264266..264553) /locus_tag="Silicibacter_276" /function="COG: Uncharacterized proteins of the AP superfamily" /translation="MDRKLLLIILDGVPHRNFRRLFGNLEGWVASGDARVWKHRAVLP SISASCYASIHTGVTPQEHGCTGNGNVFRLSHDDVFSQVRKAGGTTGGGRA" /product="hypothetical protein" /transl_table=11 /note="Hypothetical protein" CDS complement(264736..266373) /locus_tag="Silicibacter_277" /function="COG: ATPase components of various ABC-type transport systems, contain duplicated ATPase" /translation="MSEPLLKVRDLKIGATVYPPGEKPHDIEIVHGVSFDLMPGKVLG LIGESGAGKSTIGLSSMAYGRGGVKITGGEVWVNGRDILKSKLSDIRKLRGGEVTYVS QSAAASFNPAKTIMEQVIEASVEQGKFSRRVAEDRARALFAKLGLPDPDNIGARYPHQ VSGGQLQRCMTALALCPEPDLVVFDEPTTALDVTTQIDVLMAIKEAIRDTGVAALYIT HDLAVVAQVSDDIMVLRHGNTVEYGSVDQIINNPQEEYTQALVSVRSIEHEEKAPTEE PILSVRNITARYKGTKFDVLHNVNVDLYPGQTLAVVGESGSGKSTLARVITGLLPPRE GEIYFNGRTLTPDFNNRSREDLRELQMIYQMADVAMNPRQTVGTIIGRPLEFYFGLKG AEKRKRIIELLDEIELGEGFIDRYPAELSGGQKQRVCIARALAAKPKMIICDEVTSAL DPLVADGILKLLLNLQKIEDVAFLFITHDLATVRAISDNIAVMYKGKVQRYGGKTQVL SPPFDDYTDLLLSSVPEMKLGWLEEVIANRKMESAGN" /product="peptide/nickel/opine uptake family ABC transporter, ATP-binding protein" /transl_table=11 /note="identified by match to putative ortholog SPO2998 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(266370..267185) /locus_tag="Silicibacter_278" /function="COG: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components" /translation="MKNIPVSALIGLFFTALYFLGALFAPLLAPYGMAEVVGDVWEPS SADYWLGTDNIGRDLLSRMIYGGRTTIFIATMATLISFTTGSILGIFAAVSGGWIDQT LSRFVDLIMSIPTLIFALVVLSVTPVTVPMLILVMGLLDSTRVFRLARAVAVDIEVMD FVEAARLRGEKTAWIIFREILPNALSPLVAEMGLRFIFMVLFVSTLSFLGLGVQPPEA DWGGIVKENKDGIVYGVPAALIPAFAIATLAISVNLVADWILNRTTSLKGGRG" /product="peptide/nickel/opine uptake family ABC transporter, permease protein" /transl_table=11 /note="identified by match to putative ortholog SPO2997 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(267182..268138) /locus_tag="Silicibacter_279" /function="COG: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components" /translation="MNPVIKLLAQRIALSLFLLLMISALIFAGTMILPGDVAQSILGQ SATPEALANLRAELGLNEPALTRYFDWLFGALQGDLGTALTSGQDITSAIGSRLSNTL FLAFWAAVIAVPLAIFLGLLAVRYKDRWPDKLISGVTLASISIPEFLIGYVLMYLIAV KLRWFPSVAMINDGMNLWQKLNSIALPVAVLTLVVLAHMMRMTRAAILNVMQSAYIET AELKGLSTFKVIWRHAFPNSIAPIVNVVMLNLAYLVVGVVVIEVVFVYPGMGQYLVDH VSKRDVPVVQACGLIFATVYIGLNMVADIVSILSNPRLRHPK" /product="peptide/nickel/opine uptake family ABC transporter, permease protein" /transl_table=11 /note="identified by match to putative ortholog SPO2996 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(268140..269723) /locus_tag="Silicibacter_280" /function="COG: ABC-type oligopeptide transport system, periplasmic component" /translation="MNDYLKHLAQEAALGRMGRREFLGRAAALGVTALGANSLLASAA KAAGAQKGGTLRVGLQGGSTTDSLDPALATNQVALSVIRLWGEPLVELGEEGGLVGAV AESFEASADAKTWTFKLRSGLTFSNGQPVTAADVVATMERHSGEDTKSGALGIMRSIS NVKADGDTVVFELEDANADLPYLLTDYHLVIQPNGGKDDPAAAIGTGPYVLKAVDMGV RFVAEKNPNYWGDLGNAQTIEYVVINDNTARVAALQAGQVDMIDRVPPRTAKLVDRAP NISVHSTAGPGHYVFIAHCDTDPFANNDVRLALKYGINRQEMVDKILNGFGSVGNDSP INASYPLFTQLEQREYDPEKAKFHMEKSGYDGPILLRTSDNSFPGAPDAAALFQQSLA AAGINLEIKREPNDGYWSEVWNKQPFCTSYWGGRPTQDSMFSTAYLSTADWNDTRFKN EQFDQTLLAARGELDEAKRTQMYADMSTMVRDEGGLICPMFNDFVDATSDRLDGWKDG VKGHALMNGYAPLKMWVKA" /product="peptide/nickel/opine uptake family ABC transporter, periplasmic substrate-binding protein" /transl_table=11 /note="identified by match to putative ortholog SPO2995 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(269912..270382) /locus_tag="Silicibacter_281" /gene="dtd" /translation="MRALLQRVSAASVTVDNAVIGEIGPGLLVFVCAMRGDSEAEATQ LVQKIARLRIFRDDAGKMNRSVSDTSGAVLVVSQFTLGADTRSGTRPGFSKAAAPDEG MRLYHCFCAKMRETGLTVQTGEFGADMKVSLVNDGPVTLWLDTDDRRNTSAGSG" /product="D-tyrosyl-tRNA(Tyr) deacylase" /transl_table=11 /EC_number="3.1.-.-" /note="identified by match to putative ortholog SPO2992 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(270659..271756) /locus_tag="Silicibacter_282" /translation="MTPKDAEETHRFPCEQCGADYRFAPAEGGLVCDHCGHKKELIES PWGGGALKELDFLQALREQLPAAEMEVTRVSSCPNCAAQVEFDPAVHALECPFCATPV VADTGENRHIKPKGVLPFQFDERAAHQAMEDWLGKLWFAPNGLKEYARKGRKMDGIYV PYWTYDAQTHSQYTGQRGTEYTVSRTVMVDGKPQVRSEIRVRWSNVRGRVQRFFDDVL VLASKSLPRKYTEGLEPWDLSQLAPYQPKYLAGFRAEAYTIDLEAGFADARQKMDRII ERDIKFDIGGDRQRISSVDTDVSAVTFKHVLLPVWMAAYKYRGQSYRFVVNGQSGRVQ GERPFSAWKIAGAVVVGLILAAGVAYLASQS" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2990 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(271930..273120) /locus_tag="Silicibacter_283" /function="COG: Putative virion core protein (lumpy skin disease virus)" /translation="MGIFDFLKGEFIDVIHWTDDTRDTMVMRFEREGHAIKYGAKLTV REGQAAVFVHEGQLADVFTPGLYMLETNNMPVLTTLQHWDHGFQSPFKSEIYFVATTR FNDLKWGTKNPIMCRDPEFGPVRLRAFGTYSVRVVDPARFLTEIVGTDGEFTMDEISY QIRNIIVQEFSRAIAASGIPVLDMAANTADLGKLVAAEIGPVVAEYGLAIPELYVENI SLPPAVEQAMDKRTQMGIIGDLGRYTQFKAAEAMEAAAKTPNSGMGAGLGMGMGMAMA QQMGHAMQGGATPQAAGQPTGPWGARPAPAAPQPAAQAAPMAPPPPPVEHVWHIAENG QTSGPYSKARMGRMAQEGQLTRDTHVWTPGQDGWMRAGDVTELAQLFTILPPPPPPPP PAGG" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2988 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(273298..274545) /locus_tag="Silicibacter_284" /function="COG: Cytochrome P450" /gene="cypA" /transl_table=11 /note=", [EC:1.14.14.1] , Cytochrome P450" /note="High confidence in function and specificity" /product="putative cytochrome P450" /translation="MRHITKPPLPRPETSAKTDFMKTLTQSPTDPDFVQNPYPFYDAA RAAGKLGYWEEYKMMAAFGHDVVHMLLRDRRFGREIPAEMATEGPAHLAPFLQVEAHS LLDAEPPRHTRLRKLVLRAFTSREIKALAPGLETLCHELINAFPKDAPFDLLSSYCTQ VPVIAICRLLGVPEAMAPQLLDWSHKMVAMYQASKTTETEHAAAQASAEFIAFLTDYV DERRKTPGEDLITRLIQAEEDGESLSTDELIGTCILLLNAGHEATVHSLGNGVKTMLE QGWSSEWLQPDGISGLVEEILRYDPPLHMFTRYAYEEIEIMGHRFRRGDQVALMLAAA NRDPEALERADQFDPTRPPKVNKSFGGGLHFCVGAPLARMEMEIALPILFERCPELKL AEPPQYSNTYHFHGLTRLWVQTR" /EC_number="1.14.14.1" CDS 274545..276296 /locus_tag="Silicibacter_285" /function="COG: Signal transduction histidine kinase regulating C4-dicarboxylate transport system" /translation="MLNPRHPRLALVASVVLFIVVLSAVVWSSAYRQALTALAERSAS DLALASDRVSTQLQIFREQAVLVVEHPALQALETREGPARATALLRRIADKSGALDVF YADDSGRVLAAAEGVAGSNVSGRRYFRRAMQGAMGTEPMVLPESKRRAYFFAAPDFGP DGRVRGTLVVVADIELVEQTWRGTLPPVYFTIEDGRVFISNRFELLFWRLDDDKTGLM TADGGDLPLEVKKVGEHEIWQQRWSPYLPDEALHLGIGLPAIGMRGEILVDVTPAQRI AALQTMAMAAVCLAFGTILFWLAERRRTLAKANAELEERVETRTRALSDTNLQLRREV RERKEAEAALKQAQAELVQADKLSALGQMSAGISHELNQPLMAIQQFAENGQAFLERG KSERAGENLTRIAQMSARMARIIKNLRAFARNESEPVGRVDLVQVIEAAVELTETRLR DHDVTLDWQRPEAQSVWVRGGEVRLTQVFVNLINNAVDAMMGQEERRVRIVINDGARL TVGVRDIGPGLKQPEKVFEPFYSTKAVGSSEGMGLGLSISYGLVQSFGGNIRGTNTEH GALFTVELDYWKEETAA" /product="C4-dicarboxylate transport sensor protein" /transl_table=11 /EC_number="2.7.3.-" /note="identified by match to putative ortholog SPO2630 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 276293..277522 /locus_tag="Silicibacter_286" /function="COG: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains" /translation="MTRKVLLVDDDAAVREALGQTLELADLNAVTAGSFVAAKDHITP DFEGVILSDMRMPGRDGFHLLSYAQEVDAELPVVLLTGEGDIPMAVRAMSEGAFDFLE KPCEAATLMTVLERALKTRALVLENRRLQRQLERGDPAARMIFGVSPQIQELRARVRA AAATDAEVLVSGAPGSGIPKIAEVVHLMSRRGQGAFVKRPAAGLTPQTFEELCQTAEG GSLFLDELSAMPQETQYAVLARLEQGGGARIIGGSTVDLSERVAGGSFNAELYYRLDV MRVRVPSLAERREDIPVLFRHYVSQAAEQAGIDAPEISPDTLASLMAQDWPGNARSLM SAAMRFVLGMPEEVAQATDLGLAEQMAQVERSLLIAALGRQNGKAAAAAEALKLPRKT FYDKLARYGIRPEDYRR" /product="C4-dicarboxylate transport transcriptional regulatory protein" /transl_table=11 /note="identified by match to putative ortholog SPO2629 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 277769..278773 /locus_tag="Silicibacter_287" /function="COG: TRAP-type C4-dicarboxylate transport system, periplasmic component" /translation="MKFLTAAATALALSVTAGVAQADACDDGEIVVKFSHVTNTDKHP KGIAASLLEKRVNEEMNGTMCMVVYPNSTLYDDNKVLEAMLQGDVQLAAPSLSKFEKF TKQFRLFDLPFMFKNIDAVDAFQASENGQAMLDSMQRRGLQGLGYWHNGMKQMSANKP LVMPEDANGLKFRVQSSDVLVAQMEAIGGSPQKMAFSEVYGALQQGVVDGQENTWSNI YGKKFFEVQDGITETNHGVLDYLVVASVDWLDSLEPEVRDQFMTIMTEVTATRNAEST RVNNEAKEAIVAAGGEVRQLTAEQRQAWVDVMKPVWEQFSGDVGQDMIDAAQSINAGF " /product="TRAP transporter solute receptor, DctP family" /transl_table=11 /note="identified by match to putative ortholog SPO2628 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 278903..279580 /locus_tag="Silicibacter_288" /function="COG: TRAP-type C4-dicarboxylate transport system, small permease component" /translation="MSGARTGPSGFIHTLEESLIALILGAMTLLTFANVIARYVFNSN ILWALEVTVFLFAWLVLLGAAYAVKVHAHLGVDAIINMLPQGARRILGLIAAAACIIF SLLMLKGAYDYWAVFADLPPTSGRWFPTGFDVKARSQSFYEVQDVPMIGALRFLEDLI NYGDSYEKMPKVVPYLVLPLSMLLLVIRFVQAAVQILRGQTDRLVASHEVEDELEAVR AQRGEHD" /product="TRAP transporter, DctQ subunit" /transl_table=11 /note="identified by match to putative ortholog SPO2627 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 279580..280956 /locus_tag="Silicibacter_289" /function="COG: TRAP-type C4-dicarboxylate transport system, large permease component" /translation="MEVVLLFTLVIGLLLIGVPIAVSLGLSSTIFLLIYSDSSLGSVA GTLFQAFEGHFTLLAIPFFILASSFMTTGGVARRIIRFSIACVGHLPGGLAIAGVFAC MLFAALSGSSPATVVAIGTIVIAGMRQVGYSKEFAAGVICNAGTLGILIPPSIVMVVY AAAVEVSVGRMFLAGVIPGLMAGIMLMVTIYVMAKVKNLPKGEWNGWGEVFASAREAG WGLFLIVIILGGIYGGIFTPTEAAAVAAVYAFFIACFVYKDMGPLSNGEGQPKDSLLK KPYALITAFFHSDTKHTLFEAGKLTVTLLFVIANALILKHVLTDEQVPQHIANAMLSA GFGPVMFLIVVNVILLIGGQFMEPSGLLVIVAPLVFPIAIELGIDPIHLGIIMVVNME IGMITPPVGLNLFVTSGVAGMPMMAVVKAALPFLAVLFVFLIMVTYIPAISTFLPNMI MGPEIITN" /product="TRAP transporter, DctM subunit" /transl_table=11 /note="identified by match to putative ortholog SPO2626 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 281132..281458 /locus_tag="Silicibacter_290" /translation="MAGRFRQAACLRRLAVPSRAPRLAGGAASGCARARQQQSRGFDR AKERGANAGEDEAHHFGTQFARAQFDCSQLVNIQRGGFIQVHCFTLGCFIDGADLDHR CGRDIA" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(281216..281389) /locus_tag="Silicibacter_291" /translation="MDLNETTPLDIDELRAIELRARKLRAEMMSLILSSIGTALLRAI KAPALLLSRPRTA" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(281624..283105) /locus_tag="Silicibacter_292" /function="COG: Superfamily II DNA and RNA helicases" /gene="rhlE" /translation="MTKFTDLNLNPKVLKAIEEAGYESPTPIQAGAIPAALEGRDVLG IAQTGTGKTASFTLPMITRLARGRARARMPRSLVLCPTRELAAQVAENFDTYAKHVKL TKALLIGGVSFKEQDAAIDRGVDVLIATPGRLLDHFERGKLLLTGIEIMVVDEADRML DMGFIPDIERIFSLTPFTRQTLFFSATMAPEIERITNTFLSGPERVEIARQATTSENI EQAVVMFKASRKDREGSEKRRVLRELINQEGEAVQNAIIFCNRKTDVDIVAKSLKKYG YDAAPIHGDLDQSQRTKTLDGFRDGTLKILVASDVAARGLDVPSVSHVFNFDVPGHAE DYVHRIGRTGRAGRDGKAITLCSPRDEKALDAVEGLVQKEITRLENPVKPTPRKTATK DEDAGDKPKPARRSRSKAASAKTDATPTPEAANDAAPQVEAPQQQPQEPKETRAEQPS AGAKSGKSRGRGRRDDRRDDKVVGMGDHMPSFIALSFDERRAS" /product="ATP-dependent RNA helicase RhlE" /transl_table=11 /note="identified by match to putative ortholog SPO1443 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(283300..284238) /locus_tag="Silicibacter_293" /translation="MTVKWGLVATLKAEAEAVLNFAAWHLEQGAHRLFLYLDAACPDA LPHLQDHPRIRVIETTEAHWLKRRGRVPEKHQVRQSLNATRAYRRQARDLDWLIHIDV DEFLWSPDPLAPQLEALDPDVLCARVRPLEHLAGSADRFKSRIPSGSDASQISTRIYP RFGGYLKGGFVSHVQGKLFVRTGLEEVDLRIHNVFVEGVENPCATELTNIDLCHHHAS DWAQWIAQYRYRLNKGSYRADLRPAQPRSAGGTTLHELLSLLEAEEGESGLRAFFDET CADSPELRQTLASEGLLRQRALPLVAIRQKHFPHFS" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1444 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(284311..285999) /locus_tag="Silicibacter_294" /function="COG: Translation elongation factors (GTPases)" /translation="MRPVKHIAPVQHGFSLPLSRFVAKASLMLDTAHNRPDLPPEIAR RRTFAIISHPDAGKTTLTEKFLLYGGAIQMAGQVRAKGEARRTRSDFMQMEKDRGISV SASAMSFDYGDFRYNLVDTPGHSDFSEDTYRTLTAVDAAVMVIDGAKGVESQTQKLFE VCRLRDLPILTFCNKMDRESRDTFDIIDEIQENLAIDVTPASWPIGVGRDFIGCYDLL RDRLELMDRADRNKVAESISINGLDDPKLAEHVPEHLLEKLLEEVEMARELLPTLDPQ AVLEGHMTPIWFGSAINSFGVRELMDGIGQYGPVPQIQSAEPRQIAPEEKKVAGFVFK VQANMDPKHRDRVAFVRLASGHFKRGMKLTHVRSKKPMAISNPVLFLASDRELAEEAW GGDIIGIPNHGQLRIGDTLTEGEALRVTGIPSFAPELLQGVRAGDPMKAKHLEKALMQ FAEEGAAKVFKPSIGSGFIVGVVGALQFEVLASRIEMEYGLPVRFEASQFTSARWVHG DKTAVDKFVNANKQHIAHDNDGDIVYLTRLQWDIDRVERDYPDLKLSSTKEMMV" /product="Peptide chain release factor 3 (RF-3)." /transl_table=11 /note=", Peptide chain release factor 3, Elongation factor Tu GTP binding domain, prfC: peptide chain release factor 3" /note="Conserved hypothetical protein" CDS 286211..286504 /locus_tag="Silicibacter_295" /translation="MPKDQAAPSSDEIIAQMDVLRSDIAELSKSVSHLAKDRVGKARD AARETARDQAQTVADGAAQMSRQAEDAVRAQPLAATAIAAGLGFALGYLSNRR" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note=", Bacterial protein of unknown function DUF883" /note="Hypothetical protein" CDS 286509..286901 /locus_tag="Silicibacter_296" /translation="MFRFLKSQARRSARRARYAVLTALSAAVGAGFLSTALYAALLQA GQPHAIAALILGSLWFGLSGVFLLLKGGVGADEGAHSGSGVSGVQAAAPHVAHPHGHV STAPSVAEAFVNGMNEGAGFARMQQGRS" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(286980..288134) /locus_tag="Silicibacter_297" /translation="MTKHASARKFPPRARFLPKCEPSLYHERRSVSARASGPTTVIDP KTVTDVTNDTLSHYALPAYPAEQFCVDIGANAGDPIGILDDLVMDDIYELTSDARLRR LAFGVSTEGTITLHSESEMGQDGARLHLDCAVTLMPDLGSAIEALIAVEVDNEGLIAR LYLIPQAPLAQGTGYRLVRASREPVWTRLAQLSCVAFSRGTHITMGTGEQRPIEMLRA GDRVLTRNSGARRITWVGHTTVRAVGEMAPILIRQGALNNARDLLVSPDHRLMIYQRS DALGAGRNELMIRARDLVNGDSVVVQDGGFVDYYQILFDRHHIIYAEGIAAESMLVDP VTRPALPEEVQQRLTQPRRHGTRGDHGLEIRRPMLSHPDTVDLLKRASLR" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO2693 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 288197..288976 /locus_tag="Silicibacter_298" /function="COG: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /translation="MDLGIRGKRALVCASSKGLGLGCAEALAEAGVDLLMNARGSEAL EASAQDLRDRFGVRVETLACDVTDEGARAELIDRAKGVDILVTNAGGPPPGVWSDWDR ADFIKALDANMLTPIALMKALLPAMMEAGWGRVVNITSQSVKAPIAALGLSNSARAGL TGYVAGTARQVAGQGVVINNLLPGIHATDRAVSLDTGVAQAQGISMDEARAQRAATIP AGRYGTRQEFGATCAFLCSQHAGFIIGQNILLDGGATNMTL" /product="oxidoreductase, short chain dehydrogenase/reductase family" /transl_table=11 /note="identified by match to putative ortholog SPO2692 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 288981..290099 /locus_tag="Silicibacter_299" /function="COG: DNA alkylation repair enzyme" /translation="MAESFSLKDQLFNVEKTRYLAGLFDAASVEFDPRAFEADVMARL LDLELKARINWIAEMLSKHVPGPLDQVAPVIFAALPPPLDPSLRDDDFGDFIFAPLGE WVADLTKTEADLPLALDLLEAVTQRFSMEFAIRPLLKTWPDPVLARMSRWAGHAHYHV RRLASEGTRPRLPWGLAVNLPLDAPLPILDRLHGDDTRFVTRSVANHLNDIAKKDPQI VVDQLTAWQARGEQAQKELDWMTSHALRGLIKAGDPRALRLLGYDPELDLSAELELPG RVRIGEKLMLGARLQGGRGARVLVDYALTFQRAGGKTSTKVFKWKTGTLGADGLSLQK THPLKAQASTFTLLPGAHRVTLMVNGQPRASGEVEFLA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2691 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 290056..291294 /locus_tag="Silicibacter_300" /function="COG: ABC-type oligopeptide transport system, ATPase component" /gene="potG" /transl_table=11 /note=", [EC:3.6.3.30] , ABC transporter related, ABC transporter, 3a0106s01: sulfate ABC transporter, ATP-binding protein" /note="High confidence in function and specificity" /product="probable ABC transporter ATP-binding protein" /translation="MASPGQAARWSSLPEASRLGISAQPPTESVPKTKGQTMPEQRTK SALPSVQAEGHEVTPRLEIRNIRRFFEGRAVVDDVSLTVLPGQVTCLLGPSGCGKSTT LRMIAGVEMQDEGEIYVDGKLICDTIFRVPPERREIGLMFQDFALFPHLSVGDNVAFG LKGSKDQKRARARELLDRVSLAQYIDDYPHQLSGGEQQRVALARALAPSPKIMLMDEP FSGLDNRLRDGIRDETLSLLKEEDTAVLLVTHEPEEAMRMADEIALMRDGRIVQQGAP YNVYTRPVDKAAVAFFSDVNTLPAQVNGALAETPFGQFLAPGVPDGTDVEIVFRPQHL RIDFDRNGRGPEATARDGVPARGIVQRARFLGNESLVEFRMDFDGSILKATVPNVFLP AEGRAMWLTVPRDRCFVFTR" /EC_number="3.6.3.30" CDS 291307..292188 /locus_tag="Silicibacter_301" /function="COG: Histone acetyltransferase HPA2 and related acetyltransferases" /translation="MLEPCQPEAAMQQSFEIRPLTRDEIDVAVTWAAHEGWNPGPSDA TCFAAQDERGFWGGFLEGEMIACISVVTYGAAFAFLGFYIVAPQHRGQGYGYALWQRA LEHAGQRSVGLDGVVDQQENYRRSGFDLAWSNIRFGGVLDAVPRASDAFSLTWLDGLT QDVAAFDARVFPAPRPAFWQHWLRAPGHVSIAAYDETGISGFGTLRRCETGAKIAPLV ATSREAAQAVLAGLLRDWPKDEEVFLDVPEPNAAAVALARDLGLVPVFETARMYRGRR PEVARDLIYGVTSFELG" /product="Hypothetical protein F36G3.2 in chromosome X." /transl_table=11 /note=", GCN5-related N-acetyltransferase, Acetyltransferase (GNAT) family" /note="Conserved hypothetical protein" CDS complement(292194..292883) /locus_tag="Silicibacter_302" /function="COG: Transcriptional regulators of sugar metabolism" /translation="MRRTDRLFEIIQILRDGKLHRAQDIAARLEVSTRTIYRDMDTLV ASGVPVEGERGVGYMVREAITLPPLTLTPSELEALNLGMAIVAEAADPELKSAAESLA AKVDAVLPVETVAEAEAWKFAVYPFGDAARGFAWMPTLRAAIKARQKLALRYRRIDQT LTERVIRPLHMEYWGRVWTLTAWCETRGDFRVFRVDLIETAEALPELFVDEPGKRLQD YQACEDAREGS" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2685 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(292917..293240) /locus_tag="Silicibacter_303" /translation="MTKTVVEVVTFKLNPGVSDADYVAASQKTESFIGAMRGFIDRRL SKGEDGTWMDYVVWADMTAAQDASAQFEQAECAADLMQMIDPKTLMMRHEHQMWTMSP ASAMG" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2684 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 293484..293699 /locus_tag="Silicibacter_304" /translation="MLNNIGLPGILLIAVVVLVLFGRGKISSLMGEVGKGITSFKKGI NEGTKELEDDAAAEAKDVTPEAEKDKA" /product="twin-arginine translocation protein, TatA/E family" /transl_table=11 /note="identified by match to putative ortholog SPO2683 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 293707..294195 /locus_tag="Silicibacter_305" /gene="tatB" /translation="MFDLGWTELLVIGVVALIVVGPKDLPKLFRNVGRFVGKARGMAR EFSRAMEDAADEAGVSDIQKTFKTATNPMGSAMDSVKQATRDLTDSIDPTKFDPESET GKLAADRAENAKKIQAATARAAADRMAREAAEAAAKAEEAEAALSATPASTASSDSET KA" /product="twin-arginine translocation protein TatB" /transl_table=11 /note="identified by match to putative ortholog SPO2682 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 294192..295082 /locus_tag="Silicibacter_306" /function="COG: Sec-independent protein secretion pathway component TatC" /gene="tatC" /translation="MSQTDDLDDSTAPLIEHLAELRSRLIRAVMAFAVGIVLAFMVAE PILQFLVAPIEQTLRELGDPSPTLQYTSPQEYLFTLFRISMVFGFALSFPVIGFQLWR FVAPGLYKSEKGAFLPFLIASPFMFLLGASFAQFVVTPLAMQFFLGFADVSSIFAGLL SQATGGDVPADVAVVPETSEGVKITFFGKVNESLDITLKFIMAFGLCFQLPVLLTLMG KAGLVSAEGLGGMRKYAVVAILVLAALVTPPDVITQIILFTVVYGLYEVSIFLVGRVE KKREAQLRAEGYYDDELDGE" /product="twin-arginine translocation protein TatC" /transl_table=11 /note="identified by match to putative ortholog SPO2681 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 295237..296112 /locus_tag="Silicibacter_307" /function="COG: Predicted ATPase (AAA+ superfamily)" /translation="MSGQQDDVEDGMDQDTLTRIAEALERMAPVPQSTPDFSAASGFV WHVEPDRLEPVPEINRVELDLLVGIDRSRDTLLENTRRFAAGHAANNALLWGARGMGK SSLVKAIHGALVTDHPELKLVELQREDLPSVARLLNHLRGAPCRFILFCDDLSFSHDD QHYKSLKAVLDGGIEGRPENVVFYATSNRRHLMPRDMIENERSSAINPSEAVEEKVSL SDRFGLWLGFHPCNQDAYLAMIEGYCAAYGVTVDPERLRAEAIEWQATRGARSGRVAW QFFTDLAGREGVALR" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2680 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(296251..297531) /locus_tag="Silicibacter_308" /function="COG: Membrane proteins related to metalloendopeptidases" /translation="MTRTPKVFRTIRPIPLPFPRSSSASSGASRLRPSIALLPLVLLA AACTEPLDYDLRGQLGAFNTTRAAQTATENRPAPDSRGLITYPSYQVAVARNGDTVAD LAGRVGLPAVEVARFNGVETTDPLRKGEVLVLPRRAPEASARSGTATPGGVDIASLAG SAIDSAPSTSPNPGSVTTTTLQNTPSKPAPTRVQAGPEPVRHKVTRGETAYTIARLYQ IPVKALAEWNGLGSDFAIREGQYLLIPLKDPNARPPKAETQEAVTAPGQGSATPTPPS ATQPLPDEDVKPAAEARTEPTPTVKIQEPTRASEAAMAYPVTGKIIRAYSKGKNDGID IAAAPGSPVKAAEAGTVAAITADSNKVPIIVIRHDRNLLSVYANVDGIRVQKGDRVNR GQNIAKLRGSAEEAYVHFEVRDGFESVDPLPYLQ" /product="LysM domain/M23/M37 peptidase" /transl_table=11 /note="identified by match to putative ortholog SPO2686 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(297660..298307) /locus_tag="Silicibacter_309" /function="COG: Protein-L-isoaspartate carboxylmethyltransferase" /gene="pcm-2" /transl_table=11 /note="identified by match to putative ortholog SPO2687 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="protein-L-isoaspartate O-methyltransferase" /translation="MSGPDAQTKMQFLFALRSRGVTEAAVLEAMEAVDRGLFLRGIFS ERAYEDVPLPIACGQTISQPSVVGLMTQALQVNPRDTVLEVGTGSGYQAAILAKLARR VYTVDRHGRLVREARQVFQQMSLSNITSLVGDGSHGMPDQAPFDRIIVTAAAEDPPGP LLAQLKVGGIMVVPVGQSDAVQTLIRVRKTENGLEYDELRPVRFVPLLEGLGKDT" /EC_number="2.1.1.77" CDS complement(298304..299086) /locus_tag="Silicibacter_310" /function="COG: Predicted acid phosphatase" /gene="surE" /transl_table=11 /note="identified by match to putative ortholog SPO2688 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" /product="acid phosphatase SurE" /translation="MRILVTNDDGISAPGLAVLEQIATELAGPEGEVWIVAPAFEQSG VGHCISYTHPSILSELGPRRFAAEGSPADCVLAALHVVMKDTPPDLILSGVNRGNNSA ENALYSGTLGGAMEGALQGVPAMALSQYYGSGNRDLENPFEAARAHGAEVVRKLLSAT PQNDSPYRLFYNINFPPVAAGDVKGIKVTTQGCRSGKRFSAEEQFSPNGKRFIWVKGG DQQVSTAPETDAAANLDGFISVTPMRADLTAHDAVEALKAIE" /EC_number="3.1.3.2" CDS complement(299362..300009) /locus_tag="Silicibacter_311" /function="COG: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /translation="MTDKIALITGASRGLGAALAEALAPTHHIIAVARTTGALEELDD RIQAAGGSATLAPMDITVPEAMATLCRGIFDRWGKLDLWLHTAIHAAPLSPAHHVAPK DWQKSVSVNATAPSVLVPYVAPLLGQDGTAVFFDDPRAGEKFFGAYGATKAAQIALVR SWQQETIRTGPHVKLLTPPAMPTALRARFFPGEDRTPLTPPAEAAKALLTDILAP" /product="oxidoreductase, short-chain dehydrogenase/reductase family" /transl_table=11 /note="identified by match to putative ortholog SPO2679 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(300093..300347) /locus_tag="Silicibacter_312" /translation="MSNADSNVAALATQKDALPDRNLSVIGLFGSEGNMQALVRHGSG RVQTVQAGERISLGRIMAIDAAGLLIERRGEIGRLPMLVD" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2678 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(300602..301144) /locus_tag="Silicibacter_313" /translation="MLSSSRQCRCCGATFAQLLSLSCDRPDIVPGDLELQDNTAVFVT EGDVLTEDFCRFGTLRFLRAVLAIPLADSRGEEFILGTWAGVSEEVFNEYLDLFELRE TESMGSRPAWLSNQIPPDSNGPLACMLHMRPDGQYPELQVSEVNHDLARMQELGLNLE ELLTFLHAYGHDLASLVYDS" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(301341..302861) /locus_tag="Silicibacter_314" /function="COG: Glutamine phosphoribosylpyrophosphate amidotransferase" /gene="purF" /transl_table=11 /note="identified by match to putative ortholog SPO2677 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="amidophosphoribosyltransferase" /translation="MCGILGIASRNEQVFAELYDGLLMLQHRGQDASGIVTYGDGFFR ERKANGLVKDVFGAKDAETLQGRVGMGHVRYPTAGSLSAAEAQPFFVNAPYGIYLVHN GNITNTEEQRAKVTGKYSRHLRTTSDSEILLNVLADKVADAIKVNGNADPIRNIFAGV KMTMERVQGAYSVICLIAGVGMLAFRDPHGIRPLSVAQREAEGEGNDYAFASEDVAFG INGFEKLRDLKPGEAILVDLDGNKHEFQAVEGKLTPCIFEYVYLARPDSLLDGISVYK TQIRMGQTLAKQIEASGLDIDAIIPVPDSARPVALEVSNITGIRYREALVKNRYVGRT FIMPGQEERQKSVRRKLNAIPREMQDRNILLIDDSIVRGNTIKKIVQMCREAGAKKVY IASASPPVKYPNVYGIDMPTKHELVANGRSIEEIREELGADELFYQNLEDLIWAAKGG NPDIEAFDCSCFDGEYVTGSVSEDYLNTLETSTRVTKKIKDMPDAGASWNGATLAT" /EC_number="2.4.2.14" CDS complement(303323..304033) /locus_tag="Silicibacter_315" /translation="MLLDHTTAFTDYQPVDLLLDLRSGDAEAQANARLRPQNGGVLPG TLIETGSGFKQARALRPGDMVQTFDGGLREVVNVRHSVPRLTAMVHVPAGALGNDAAL ELPSDAIVAIEGDLALDLFDLPVVTAKLVALIGYNGITTALPERLARIHIECAEEELV WCEGGMVLNAAEAETEGFYELLDLAETRQIVEAGRIEATETFEIDEDAEDADFFGVEA APAPAFDPIDLLFGRYAA" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2676 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(304442..305065) /locus_tag="Silicibacter_316" /function="COG: Uncharacterized membrane protein, required for colicin V production" /translation="MANISEQAKRPLKLYFAGKQARDMEGFTIIDGAVALVIVVSALL AYARGFVREVMAIIGWVAAGVLAYMFAPQAEPLMAEIPVVGDFIADSCELSMIAAFFA VFAIALIVVSFFTPLLAGLVQRSALGGLDNGAGFFFGVLRGILLVVIGFFVYNVIMTG QSFTIVDESRSAAVFNQVIGKVEEQNPEQALGWVTQKYEELIASCGI" /product="CvpA family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2675 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(305040..306404) /locus_tag="Silicibacter_317" /function="COG: Predicted ATP-dependent serine protease" /gene="radA" /translation="MAKTTFSCSACGASYSKWSGRCEGCGEWNTISEDKGLSSGGPAK KSLGAMRGKRLALSDLATQETPPPRTLCGVAELDRVLGGGLVDASAILVGGDPGIGKS TLLLQAAAQFAHAGLKTVYVSGEEASAQVRMRAQRLGLAQAPVKLAAETNLRDILTTL EAEKPQLAIIDSIQTMWADNVDSAPGSVSQVRAAAHELTTFAKTNGVSIIMVGHVTKE GQIAGPRVVEHMVDTVLYFEGERGHQFRILRAVKNRFGPADEIGVFEMTGGGLAQVVN PSALFLSERGQPSPGSVVFAGIEGTRPVLVEMQALVAPSPHSQPRRAVVGWDSSRLAM ILAVLEARCGIPFAGLDVYLNVAGGMKISEPAADLAVAAALLSAREDTALPADTAIFG EISLSGALRPAPQTENRLKEAQKLGFTAAIAPSGGKTVSVPGLTLRPAADLTGFVGEY FGAG" /product="DNA repair protein RadA" /transl_table=11 /note="identified by match to putative ortholog SPO2674 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(306726..307226) /locus_tag="Silicibacter_318" /function="COG: Uncharacterized paraquat-inducible protein A" /translation="MSASMTAASARGKTLLFLRLANLALLILYPIAWFAPLLRAGLLP IFGLSEISVLTGLQSLWNSDIVLALVVTVFALFAPYLKTIGLALVQFRLLDARSLPVL NILGKLAMADVFLIALYITLAKGISYATIEVAWGMYLFTACILASIILSIATDRHIRR ESGAGQ" /product="paraquat-inducible protein A, putative" /transl_table=11 /note="identified by match to putative ortholog SPO2673 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(307211..307888) /locus_tag="Silicibacter_319" /translation="MLAAILAPIINGILGLFAALVSLMAELLPPVLAPIVEAILWVYV ALIAAFSHLIWGLVRLLGLASHARGISFAFFALAIAATLYLLAGMALFFEGDTQNVLR SGYSTHSVLVAFVGMLVAAAIGSCLRNDPSATEPNEAIAQTSDAPSVAPSHVSSRRRA YVTGAVLAVGCGLLGLWIYNTVLAAKEKRPCTKTETAIIVAERVVASKSGAQNSFDTE DLKCRLP" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(307952..308710) /locus_tag="Silicibacter_320" /function="COG: ABC-type oligopeptide transport system, ATPase component" /translation="MTHPMIEMREVAKAFGSNAVLRGVDLEVAKGSSLVIIGGSGTGK SVALKCVLGLIEPDSGEIRVDGKPVGQGDRDAFLSRFGMLFQGGALFDSLPVWQNVAF RLLRGSLARPRDEAREIAIEKLRRVGLKPDVADRLPAELSGGMQKRVGLARAIAAEPE IIFFDEPTTGLDPIMSGVINDLIREIVVEMGATAMTITHDMTSVRAIADNVAMLHGGK IRWTGPVAEMDNSGDPYVEQFISGSAEGPIEAVR" /product="ABC transporter, ATP-binding protein" /transl_table=11 /note="identified by match to putative ortholog SPO2672 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(308707..309489) /locus_tag="Silicibacter_321" /function="COG: ABC-type transport system involved in resistance to organic solvents, permease component" /translation="MTPTSALGMIGRASLGRLAALGRITRFAASTFSHMLRPPFYPRE LANALLQVGWLSLPVVALTAIFTGGALALQIYAGGARFNAEAVVPQIVAIGMVRELGP VLVGLMIAARVTSSIAAEIATMRVTEQIDALVTLSTNPMKYLVAPRVLAALLTVPVLV GVGDIIGIMGGYVVATETLDFNAAAYLKNTVDFLELRDIVSSLVKGAAFGTIAALMGC YYGMQSGRGAQGVGRATKGSVEAAAVLILAANFVLTGVFFSL" /product="membrane protein" /transl_table=11 /note="identified by match to putative ortholog SPO2671 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(309486..310523) /locus_tag="Silicibacter_322" /function="COG: Alanine racemase" /gene="alr" /transl_table=11 /note="identified by match to putative ortholog SPO2670 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="alanine racemase" /translation="MSTARLKINLDALAINWRNLDAKTNCETAAVVKANGYGLESGRV GKALAQAGARNFFVAIAEEGIALRRALGPGPGISVFAGHMEGDAKLLRDFQLTPMLNS LDQMLRHFESLPGHPFGVQLDSGMNRLGMEAAEWMAVRDIALDQNPVLLMSHLACSDE PGHGMNAYQLKNFIEMTEGLNIPRSLAATGGLLLGRDYHFDLCRPGIGLYGGAPYADA LPVVELEVPVIQVRDLAPGESVGYGNTWIAQRDSKIATIAGGYADGLHRAFQRQGIMA YAGGTPCPVVGRISMDLITVDVTDLAEVPPYLSLMNETQTVDVLANAADTIGYEVLTS LGNRYARTYSA" /EC_number="5.1.1.1" CDS complement(310708..312363) /locus_tag="Silicibacter_323" /function="COG: Replicative DNA helicase" /gene="dnaB" /transl_table=11 /note="identified by match to putative ortholog SPO2655 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="replicative DNA helicase" /translation="MSPSGDFIKNCPHRPLRLSSNDPQGFPDGIRGSFQRKTRAYQKR AIMNEITSFNGDPQPPASPDARGAADEAQATELPHSVEAEQQLLGAILTNNDVYDKVA SIINSSHFYDPVHARIYEVAAARISKNALASPVTLKAFMEDDQGLKELGGPAYLAKLA SASISAFAVRDYAQMIYDLAIRRELIALGQTIAEKARRVDVASEPKEQIVEAEQSLYQ LAEQGQTEQGFKSFLRAVTEAVNVTNEAYQRGGGMAGISTGLDDLDKQLGGLHPSDLL ILAGRPSMGKTSLATNIAFNVAKAYRRGLKQDGSEGAIDGGVVGFFSLEMSAEQLAGR ILAEASEISSHKIRQGDMTEEEFRRFVQAAKDLESCPLFIDDTPAIPISQLAARARRL KRTHGLDLLVIDYLQLCRGMSDNRVNEIAEISMGMKAIAKELNIPVIALSQLSRQVES REDKRPQLSDLRESGSIEQDADVVMFVFREEYYKEREKPGDHELDKMEEWKQAMERLH AKAEVIVGKQRHGPIGTVELSFEAQFTRFGNLAKAWQQQPDGY" /EC_number="3.6.1.-" CDS complement(312478..313158) /locus_tag="Silicibacter_324" /function="COG: Orotate phosphoribosyltransferase" /gene="pyrE" /transl_table=11 /note="identified by match to putative ortholog SPO2654 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" /product="orotate phosphoribosyltransferase" /translation="MIPSSYPSAEEIARLSARMLLEIGAVNFNTDEPYTLASGLPSPS YIDCRKLISFPRIRSTLMDFMAVTVMRNAGFEAFDNIAGGETAGIPFAALVAERLALP MTYVRKKPKGYGRNARIEGAMSEGERVLLVEDLTTDGGSKLSFVDAIRETGATCGHTA VIFYYDIFPETTKTLGDHGVQLHYLCTWWDVLAEARAQAAFSTETLDEVEKFLRDPRA WQEANKKT" /EC_number="2.4.2.10" CDS complement(313235..314275) /locus_tag="Silicibacter_325" /function="COG: Dihydroorotase" /translation="MTQSLTITRPDDWHLHLRDGDMLRAVLPETARHFGRAIIMPNLV PPVVTGAEASAYRDRILAALPEGMTFEPLMTLYLTEDTDPADVAAAHASGLVKAVKLY PAGATTNSSSGVRDFDKVRPVLEKMAEIGLPLCTHGEVTDHDIDIFDREAVFIDRVLD PIRQSTPGLRVVMEHITTKDAADYVRSQDKDLGATITTHHLIINRNHILVGGIKPHYY CLPVAKREEHRLALRQAATSGDARFFLGTDSAPHTDANKLQTCGCAGCFTATNTMALL AHVFEEEGALDKLEGFASKNGPAFYRLPENDGQITLVKQDAPVAFPEQIDTPDGPVTV FDPSFAVHWTVT" /product="dihydroorotase, homodimeric type" /transl_table=11 /EC_number="3.5.2.3" /note="identified by match to putative ortholog SPO2653 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(314318..315313) /locus_tag="Silicibacter_326" /translation="MQDDTDILEQDLSGLKPAEWQARLAEMAEENGMYQPLGERHFAT FIDQGNTLLVTFESRQGIESFSETAQPLGFDLVKNLGWSHLCLISDGDTWFREPRIYG FFDQLIDDGFFEEFDNVVFYGAGPCGYAAAAYSVAAPGATVVAIQPQATLDPRMTEWD DRFVEMRRTSFTDRYGYAPDMLDAAERGFVLYDPYQSLDAMHAALFARPNVTRLRLPC MGEAIQTRLIEMDILYRIMSLAGSGRLTAEAFYRLARARRDNNVYLRNVLNRLDYLER PYLNILLCRNVNDRRRMPRFRRRLRDLERRAAEGEFRMPPGPALPPDPQHGDDGL" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2652 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(315463..316596) /locus_tag="Silicibacter_327" /function="COG: Glycosyltransferases involved in cell wall biogenesis" /translation="MRTLAVLTVRNEGAFLLEWLAHHKAVGFTDFLVFSNNCDDPTAE ILTRLDEMGHLAHVENTGPFDKGGIQFTAMKRADKHRLAKRADWIMALDVDEFVNIHT GRGQISDLLEALPEADAITLTWRLFGNADQVRYEGERVTDRFTRAAPAVMHWPWRASM FKTLYRNSGVYRKIGIHRPRNVKDEAARDQYRWFDCVGRELMGDFKTKRVFSNYGQDN YQLAQLNHYPLGAMESYILKANRGRAVHSEDLLDVDYWVERNFNTDEDTSIRRYRAAR DAILDLFLADEALRKLHERAVQWRKDRFMELMREEPYRALFGRLMMTPPSRPISQVTG RTLAGFATLGHQNQRRIRVKKDTVPGETPSGDSPNTSPLPDKD" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(316599..318962) /locus_tag="Silicibacter_328" /translation="MRIYLHIGLHRAGSERIQAVLADKRDQLRARGILVPRAAGSKNH TRLFMAVSDPEHVDPLRYNRGFISPEKQADLRANLQESLSRDITQYQPHTLILSAHQL GTHLSRKSELERLKALLAPLSDDIRIVAHVEAQARMLADVFAEQVFEGRAASLSREVE LTREDSWWSAALDTLPPVDPQAGQFEETQGAPFWLDFKALQGFWEEVFGAGTVSFRSY RAEVFDSADVTQEVCETFGIAEQIGRVDPAKRSRPIPAAWLTRGRQFNALLLRLLAQG NHILPRKLWRQMIQDLKVDGPPLDPARLGAVTRFFTAQNTHLCAEHAALSQDVFEIET STEDWSEAPPLQGFRASQYLLAFLYRIEKATNEERAAREGDLKAHQSARAAQQSAEGA APTAKARRLMPPLALKNFAMLQGSTFKPHDRLGRVDETAERPPYTEVPPRILSKGQSG NVIVGCMKDEAPYILEWVAYHRMIGVDHFLIYTNGCSDGTAELLDRLQALGILEHRNN DNWKGNSPQQYALNQALKEPVIKQADWVIHIDVDEYINVRCGNGTLADFFDHVPDATN VAMTWRLFGHNGITTLNDRPVIAQFDRCAPKFCPKPHTVWGFKTMFKTIGAYQKISCH RPNKLEEEKRAQVKWVNGSGEDMTHEVIDNGWRSSKKSIGYDLLQLNHYALRSAESFL VKRQRGRALHVDRSIGLNYWIRMDWNDHRDITIQRNLPRMQAEMDRLLADETLRALHE AGLAWHRAKAAELHQQEEFEALYQQALEIDIPATERVAWALSLDLES" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO2649 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(318962..319621) /locus_tag="Silicibacter_329" /translation="MTVEIINLGLPKSGTTTLKDALTRAGYSVADHRIKSEEDPDDPD DRVFVGDLMYQGLYKYGDPLALLNTHDALTEVSFIYGGNSVWPQCDHAMLLALRKLHP RLCFVATRRDTEQMAHSIMRWNNLGKLRLPLSTVPGLPVGYGHEIDEQMIWIDGHYEA LAHWFRNDPLYLELDVAAPDAQYKLARFLGRPLPWWGQSNINPEGPSARGRGRRQDEA G" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2648 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 320647..321831 /locus_tag="Silicibacter_331" /function="COG: MoxR-like ATPases" /translation="MRICPVPRSAPAGCARIRCLRRCAVFGRSCPKLGLWSSGARTLS HPPCADVNWPNTLCAQHVACALRSHCLTLRAPHALLGRAVRKAGDLMTTAGFQSIDAV QSELSEAGYVCGRALATVVFLSTRLGRPLFLEGEAGVGKTEIAKALAAVTGRPLIRLQ CYEGLDAASAVYEWNFAAQMMAIRMAESAGQSDREALQAELFSQDYLIARPLLQAMQP DARGTPILLIDELDRTDAPFEAFLLEALSDFQVTIPELGTIRAPEPPMVILTSNRTRE VHDALKRRCLYHWVDYPDFDRELEILTAQVPTASEALSRQVVAFVQSLRTEDLFKKPG VAETIDWANCLLALDVVNLSPETIADTLGALLKYQDDIARLQGSEAKRLLDEARSLLQ EH" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2646 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(319632..320654) /locus_tag="Silicibacter_330" /translation="MRITAVTCVKNEGPFLLEWIAYHRLIGVTDFLFYSNDCTDGSDV LLDALAQRGGLSHLPNPAKGRAYQMEALKDCAHQPVVKQADWIWITDVDEFLNIHVGD HSIPALIEACHSPAAISVTFQFFANAGIEKFEDRPVIEQFTRSHNPDIWCGETAIEVK SLTRRDFPLGYYGAHRPFVSKSAKTHPRWCDGSGRQVPQKFLTAANPRRIRKFPAKGA RQLATLNHYALRSLDSYLVKNDRGDVNRENRAFDDTYWRERNDPSWEDRSILRLLPNL KAALAEMKSDPEIARLHDACVAAHLAQRDALLAQPAYQAMRAQLQKASPLPPQEEAML MRLGLM" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2647 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 321895..323178 /locus_tag="Silicibacter_332" /function="COG: Protein containing von Willebrand factor type A (vWA) domain" /translation="MVEYPSLAISDDPKLAANITHFARALRKAGLNVGTGRVLDAIRA VEAAGFTSRRDFYWTLHACFVSRPEERVVFGQVFRLFWRDPRFLEHMMAAMLPAIRGV QQERAAKPAETRAAEALLDGQLPEHPEESPEATDEAEEIEIDAAMTLSAEERLKTLDF EQMTTEEIQQAKRMLATLRLPIAPLKTRRHQPAPQGARPDWRRTMRGAGRTGGEIARI ARSKRAERFPNLVVLCDISGSMSQYSRMVLHFLHAVANRPADGRQGRWAQVHGFTFGT RLTNISRHLKQRDVDAALAAAGAEAQDWQGGTRIGGCLHAFNRDWSRRVMGQGAVVLL VSDGLDRDVPETLALEMQRLRLSAGRLVWLNPLLRWDGFLPRARGIQAMLPHVDSFRA GHNIASLEDLAQALSRPDDTGEKLRLMAMMQEERA" /product="VWA domain containing CoxE-like family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2644 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 323294..324322 /locus_tag="Silicibacter_333" /function="COG: Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family" /translation="MTIAGMTSGTLSNAEEGSLSRFDAAPELALAWHRAGQGAVLCTV VQTWGSAPRRTGSQLVVGGDGRIEGSVSGGCVEGAVVVEAQEALAQGCHKLLEFGVSD GDAFAVGLACGGTIKVLLEPVGSVLKEETLDALVTARREREAVAYEVSLKSGKGRLVE AGAYPERLRMDRSGVEEDGNTFVAVHNPPLRLIVVGAVHIAQALVPMAQIAGYDPVVI EPRAAFGSEERFPGVRILEDWPDDAVAQIGFDSRCALVLLTHDPKLDDPALMAALRSE CFYIGALGSNRTHGQRRERMIEAGFGTADIARIHGPVGLDIGAASPSEIAVSILAEIT AVLRGKAE" /product="XdhC/CoxI family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2640 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 324319..325392 /locus_tag="Silicibacter_334" /function="COG: Molybdopterin biosynthesis enzyme" /translation="MKFGPVPLRAALGTIAAHSIRAAARPYGSGRDYKIAKGTELTAD HIEDLNELGHQEIIVAQLEPGDVHEDAAALRLAQALVPDPEGQELRISGAGAGRVNLY ARGAGVVRLDAAQVAAVNGIDPMITVATVPDYHRVDPDSMVATIKIISYAVPEAHLAQ AVVAAKAAIRVLAPAFGTATLIETRITEEIPSDKGRAAMAGRLDRMGITLSPRVVKPH RTAEIASALRDAPGEVLLVLTGSATSDPQDVAPEALRMAGGEVTRFGMPVDPGNLLFL GYLGEKPVIGLPGCARSPALNGADWVLERVVCGLDVTSADIAAMGVGGLLKEIPTRPR PRRSAGGSEPRRIKSSRDLLTRD" /product="molybdopterin biosynthesis protein" /transl_table=11 /note="identified by match to putative ortholog SPO2639 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 325437..325922 /locus_tag="Silicibacter_335" /function="COG: Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs" /gene="coxL" /transl_table=11 /note="[EC:1.2.99.2] , [2Fe-2S]-binding, [2Fe-2S] binding domain" /note="High confidence in function and specificity" /product="carbon-monoxide dehydrogenase small subunit" /translation="MTKVSMTVNGNPVSGNVEGRTLLVSFLRDQQGLTGTHVGCDTSQ CGACVVHVDGKAVKSCTMLALEAEGAEVATIEGQAAPDGTLNAIQAAFQEHHGLQCGF CTPGMVMSAAALLKENPKPSEAEIRHYLEGNLCRCTGYHNIVKAIMAASGQDVSAIAA E" /EC_number="1.2.99.2" CDS 326077..328455 /locus_tag="Silicibacter_336" /function="COG: Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs" /gene="coxL" /transl_table=11 /note="[EC:1.2.99.2] , CO_dehy_Mo_lg: carbon-monoxide dehydrogenase, large subunit" /note="High confidence in function and specificity" /product="carbon monoxide dehydrogenase large chain" /translation="MPKDIEAKESGIGAATKRREDVRFLTGTGNYADDINVNGQAYVH FLRSDVAHGRITSLETAAAAAMPGVLRVFTGADFEGVGGLPCGWQVTDRFGEVMQEPA HPVLAQGKVRHVGDPIAAVVAESAELARDAAEAIELEIEELPAVIDMKAALAEEAPKV HDDLTSNLCYDWGFVEENKDAVAKAFDEAAHVTTLELVNNRLVANPMEPRVAVGDFNR ATGESTLYTTSQNPHVIRLLMGAFVLGIPEHKLRVVAPDVGGGFGSKIFHYAEEAFCT FAAKALNRAVKWTSSRSEAFMSDAHGRDHVTKIELALDADNNFTALRTETYANMGAYL STFAPSVPTWLHGTLMAGNYKTPLIYVNVKAVFTNTVPVDAYRGAGRPEATFQLERVI DKAARELDVDPVALRRQNFVTEFPYATPVAVEYDTGDYVATMDKLEEIADIAGFAARR AESEKSGKLRGLGVNCYIEACGIAPSNLVGQLGARAGLYESATVRVNATGGIVVMTGS HSHGQGHETSFPQVIAEMIGIPEDMVEIEHGDTNNAPMGMGTYGSRSLAVGGSAMVRA TEKIISKAKKIAAHLMEASDADIELKDGRFSVAGTDKSVAWGDVTLAAYVPHNYPLEE IEPGLEETAFYDPANFTYPAGAYACEVEVDPETGKVTIERFAAADDFGNIVNPMIVDG QVHGGIGQGIGQALLEGCVYDEDGQLLSASFMDYAMPRADDVPFYQVDHSCQTPCTHN PLGVKGCGEAGAIGSPPAVVNAVVDALRSAGKDVTHIDMPLTPARVWAAMQG" /EC_number="1.2.99.2" CDS 328546..329334 /locus_tag="Silicibacter_337" /function="COG: Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs" /gene="coxM" /transl_table=11 /note="[EC:1.2.99.2] , Molybdopterin dehydrogenase, FAD-binding, FAD binding domain in molybdopterin dehydrogenase" /note="High confidence in function and specificity" /product="carbon-monoxide dehydrogenase middle subunit" /translation="MYEFEFARPETVADAVQALSEEDAQALGGGQTLIPTLKQRLAMP STLVSLGGIAEIRGICQTDDGKLAIGGATTHAEVAEGAAAYPALAALAGQIGDPAVRN RGTIGGSLANNDPAACYPAAALASGATIVTNAREIAADDYFQGMFTTALEEGEIITEV RFPVAEAANYQKFLQPASRFAMVGVFVAKFADGVRVAVTGASEEGVFRWREAEAALSG AFSADAISGLSVEAEGMIGDIHGTKDYRAHLVTVMTKRAVAAAG" /EC_number="1.2.99.2" CDS complement(329453..329884) /locus_tag="Silicibacter_338" /function="COG: Translation initiation factor 3 (IF-3)" /gene="infC" /translation="MHPAKAMQMAEEAGLDLVEISPNATPPVCKIMDFGKFKYEQQKR ESEARKKQKIIEVKEVKFRPNTDTHDYDVKMRNVIKFLENGDKVKVTLRFRGREMAHQ NLGRELLQRVAEDIKELGKVENMPKMEGRQMIMMIGPLPSK" /product="Translation initiation factor IF-3." /transl_table=11 /note=", Initiation factor 3, Translation initiation factor IF-3, C-terminal domain, infC: translation initiation factor IF-3" /note="Conserved hypothetical protein" CDS 330250..331047 /locus_tag="Silicibacter_339" /translation="MKIAGVGAAIGLVVVAGAVWYLNQPEDQPVTDMPAEVANEAAPV TTEDTEAAAEVETGEPEAGDLQEQAQEAVDAIAETAETAVDQATEAVENAVDAASEAA ENLVEGAGETVEAVQEQAEAAVAAAEEEAVAAVEAAQDGVADAVEGAQESASEAVSTV TEGAVDLATEAQNTADAAAEAVTEAATPEIGADATADVTAAAEAETPAALLTPEGFNY DRVIELIEGSELDPLKKTALKSAITQARDNPDLLKAALQSARTALGL" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(331200..332072) /locus_tag="Silicibacter_340" /function="COG: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases" /translation="MMNEITPVSEPVTEAAAPAKAKPALPDAQTVTQVKHWTDRLFSF RCTRPASLRFRSGEFVMIGLMGDPDPKTGKQKPLLRAYSIASPSWDEEMEFYSIKVQD GPLTSKLQHIKVGDEIILRPKPVGTLVHDALLPGKRIWFFATGTGFAPFASLLREPQT YEDYDEVIITHTCREVGELTYGRELIESLKEDELLNEVIGEGFWKKIKYYPTTTREES AKMGRITDLMRSGEAFADLGVPPLNPESDRAMICGNLAFNLELKDLFENTYGLEEGAN SKPAHFVVEKAFLD" /product="ferredoxin--NADP reductase" /transl_table=11 /EC_number="1.18.1.2" /note="identified by match to putative ortholog SPO2637 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(332239..332643) /locus_tag="Silicibacter_341" /translation="MSVIVTDTGFAHDDWTGGFEGANVLDLASDTDPATLKDQLDGVE MIRVDFPSFADGRGFTIARMLRLMGYDGRLRAKGHVISDQYAMARRVGFDEVEISDDL ATRQPEGEWLFRANWQSHNYQARLRAHSNAAR" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2636 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(332649..333410) /locus_tag="Silicibacter_342" /function="COG: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes" /gene="cysH" /transl_table=11 /note="identified by match to putative ortholog SPO2635 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="phosophoadenylyl-sulfate reductase" /translation="MTRIDQEIRGHPAAAGSAEALAEQVAALNARFKHHSATSVMEGA LRDAGNIALVSSFGAESVVLLHMAAVIDPSVPVLFVDTELLFTETLVYQQEVSERLGL RNVHVIKADDIAEKDPYGAMRFSDTDACCTLRKTIPLQKALAGYDGWITGRKRFQSGT RAALDFFEVEDGTGRMKINPLAHWAPEDVRAYMDENRLPRHPLVAKGYPSIGCEPCTS PVAEGEDPRAGRWRNQNKEECGIHVVDGKFVRTGA" /EC_number="1.8.4.8" CDS complement(333414..335081) /locus_tag="Silicibacter_343" /function="COG: Sulfite reductase, beta subunit (hemoprotein)" /gene="cisI" /transl_table=11 /note=", [EC:1.8.1.2] , Ferredoxin--nitrite reductase, chloroplast precursor (EC 1.7.7.1)., Ferredoxin-nitrite reductase, Nitrite and sulphite reductase 4Fe-4S domain, CysI: sulfite reductase (NADPH) hemoprotein, beta subunit" /note="High confidence in function and specificity" /product="sulfite reductase (NADPH) hemoprotein beta-component" /translation="MYKYNDFDSAFLAERNRQFRAQVERRIAGALTEDEFKPLRLMNG LYLQLHAYMLRVAIPYGTLNPDQMRALALLAEKWDKGYGHFTTRQNIQYNWPKLKDVP DMLDALAEVNLHAIQTSGNTIRNVTADHFAGAAADEIEDPRPIAELIRQWSTDHPEFQ FMGRKFKIAVSGAANDRAVLKAHDLAIKIVKNEDGEVGYQVLVGGGLGRTPMIGKVLN DFVAADDLLPYIESVISVWNQLGRRDNKYKARIKITVHELGLEKIRELTEERFAQVRP TFGGADQALFQDIKRHFAAPEFRSEGTEVFDAAYDSDPVFRAWADTNLAEHKAPGHAI ATISIKKHGATPGDATAAQMYAMADIAEEFAYGELRISHEQNVILPHVHKNDLPAIHA RLKAADLATANIGLISDIIACPGMDYCALATARSIPVAQEIATRFEDLKLEHDIGHLQ IKISGCINACGHHHVGHIGILGLDRAGVENYQITLGGDATETAAIGTRTGPGFAYDEI VPAVERIVETYLEQRESAEEEFLQTYRRVGMEPFKAALYPASEKKVA" /EC_number="1.8.1.2" CDS complement(335074..335394) /locus_tag="Silicibacter_344" /translation="MARAFTPKVVTANHLLEGDVIYLTAENDWTRALSEAELITDEAE AQLRLLEAQSQAQIAVGAYLADAKAGEQGPEPTHFREEFRRTGPSNYAHGKQEAKLEA TANV" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2633 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(335394..336221) /locus_tag="Silicibacter_345" /function="COG: Uroporphyrinogen-III methylase" /gene="cobA-1" /transl_table=11 /note="identified by match to putative ortholog SPO2632 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="uroporphyrin-III C-methyltransferase" /translation="MDRWMPRDTHYIPPLTPPLPGAMGVMCPGVVAFAGSGPGDVDLL TLKVLKALGEADVILFDRLVSKDIMALAHEGALLEDVGKEGFGPSMAQEEICARLVHH AKRGLKVLRLKSGDPTIFGRLDEELSACEAADVDTQILPGITAASAAVAAIGQSLTQR GRNTSVRFLTGHDMKGFADHDWAQLARRGEVAAVYMGKKSARFVQGRMLMHGADLTTP VTVVENASRADQRVLATTLEHLPADLAAAHFSGPALTFLGLAPRQAAALTDIQMELA" /EC_number="2.1.1.107" CDS 336357..336836 /locus_tag="Silicibacter_346" /function="COG: Transcriptional regulators" /translation="MTVRIDATDRKILAELQRDAGQSLDEIAKQVGSSKTPVWNRIRK LREAGVVGNQTVILDAEALGFEACFFVLIRTSEHEASWQASFLKALQERPEVQEAHRL AGDIDYILKVRVKNARAYDKFYQALISEVRVHNVTALLSMEEIKSTTHLPLEQIRVD" /product="transcriptional regulator, AsnC family" /transl_table=11 /note="identified by match to putative ortholog SPO2631 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" tRNA 337013..337083 /locus_tag="Silicibacter_51" /gene="Silicibacter_51" /description="RNA" /note="Created by Search for RNAs Autoannotator" CDS complement(337385..337627) /locus_tag="Silicibacter_347" /translation="MVLTEIETGTQEAFGTIEKAHHWLSRKWPVADSAARAALAQVEA AMECMGSVQDARSAFQDAACSAGFHIADQSAQPLAS" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(338095..338343) /locus_tag="Silicibacter_348" /translation="MLENLSWGDGQMTNTPAKDDDVDIFAHLSVSAAKSKTSDVMSAA DRTTQTVKRLRDEEAAANAEKVARLRAFRKKHTPKPKT" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(338336..338542) /locus_tag="Silicibacter_349" /function="COG: Cold shock proteins" /gene="cspA" /translation="MANGTVKWFNATKGFGFIQPEDGTQDVFLHISAVERAGINRIDD GQKVTFDLENGRDGRTSASNLALA" /product="cold shock protein CspA" /transl_table=11 /note="identified by match to putative ortholog SPO3625 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(338977..339876) /locus_tag="Silicibacter_350" /function="COG: Transcriptional regulator" /translation="MTVDISLLRVFHAVMEERNVTAAARRLGQSQSTVSAALARLRDA LGDELFLRARYGVEPTEKALQIAPDIAAGLDRLEQAFRAAEPFDPIRSTRRFRLLLGP YAEVVLAPDLAEAFAQHAPKAQLELAPIGPDLDPRKLAAQSFDLAIGRFAPPPDDLVV SDLFSDGFRCIVAPAALPEGASLDLDLYETLPHVIVAPPGRWRTGVHKLTAASGLQRN TAVAVSHFLTAAPTVARINGIATVPARIAAMVAAPYGLRNVAVPRDLGTFPTQIAWHP HQRRDPRHVWLRDLLLSLTATST" /product="putative LysR-family transcriptional regulator" /transl_table=11 /note=", LysR, substrate-binding, Bacterial regulatory helix-turn-helix protein, lysR family" /note="Hypothetical protein" CDS 340007..340687 /locus_tag="Silicibacter_351" /function="COG: Putative intracellular protease/amidase" /gene="nonF" /translation="MARILILSTAADVLGDTGKPTGVWYEELATPYYAFLDAGHEVTL VTLEGKPVPIDPNSDETGDAAPASVTRFRADAAATALLAKPGRLEDEDVTAYDALYIP GGHGAMYDLAESATAAAAIGKAWDSGKVVASVCHGPAAFAKVVDAKGEPIVKGRKVTA FTNSEETAVGLEKAVPFLLETKLRELGAEFENVADWQPLAVADGQLVTGQNPASSEAA AKEVLALL" /product="Chaperone protein hchA (Hsp31)." /transl_table=11 /note=", ThiJ/PfpI, DJ-1/PfpI family" /note="Conserved hypothetical protein" CDS 341522..342433 /locus_tag="Silicibacter_353" /function="COG: Transcriptional regulator" /translation="MHLCMNWSAINFDWNQVRSFLATAEEGSFSAAARVLNQTQPTVG RQVGALEEALGVTVFERVGKSLRLTTAGTELLVHVREMADVANKISLTATGQSQSVEG QVRITASDVMSTYQLPAMLKQIRLAAPRLEIDVVAANDLRDLHRREADIAIRHIRPTQ PDLIARLVAQASAHLYAASSYLDQVGRPRSEEELAQLDFVSFGDVERFIGFLNPAGIP VTRKNFRIGSHSGVVSWELVRQGFGVSVMSDDVAAPTPGIERILPDRDPFAFPIWLAT HSELHTARRIRLVFDQLAEQFKARETS" /product="transcriptional regulator, LysR family" /transl_table=11 /note="identified by match to putative ortholog SPO3490 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(340790..341527) /locus_tag="Silicibacter_352" /function="COG: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase" /translation="MHNHPAKRINSIKLCLDVKVALTPQTESRDMAASSKDAAFWSKI SRKYAADPIRNMDGYLQTLDRTKSYLKPEDHVLEIGCGTGSTALLLAPHVAHITGTDL APGMIEIAAEKRAKEGLENVTFKVAETLDHNPQDGAYDAILAHNLLHLLHDLDQSLQR IAALTKTGGVFISKTVCAPKAGGIKYALIRALAIPLMQRIGKAPYVNFISVPDLERRI ERAGFEICEVISQPGLMQSHYVVARKL" /product="methyltransferase, UbiE/COQ5 family" /transl_table=11 /note="identified by match to putative ortholog SPO3491 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(342539..343414) /locus_tag="Silicibacter_354" /function="COG: FOG: EAL domain" /translation="MLRDKRIALWTRVSSPSCHKEELRDGREMTLTDTEKCKACRNGK GFEVPISMAFHPIVSVGSGKVFAYEALVRGQDGSGAAQVFEQVNDDNLYAFDQKCRKT AIEHASRLDLGDTGSLLSINFLPNAVYDPKACIRLTLETAKKTGFPVSQIMFEFTEVE RISAPHLLDILSTYRRLGFLTSIDDFGAGYAGLDLLSRFQPDVVKLDAELTRNIDQSS VKQTIVRHVISMLEQLGIIIVAEGIETQGEFSCLYDLGVDLMQGWLFAKPGFETLPDV RWPDALRSVEESKTA" /product="Hypothetical 80.5 kDa protein in ntrC 5'region" /transl_table=11 /note=", Hypothetical 80.5 kDa protein in ntrC 5'region (ORF1)., EAL, EAL domain" /note="High confidence in function and specificity" CDS 343664..344218 /locus_tag="Silicibacter_355" /translation="MNGFGRQFFRMAAVSFGGAIASFSGPSEAAAQEQRFAAYITGYG FWDNTPPGSVAISHPVKHRRAGGIGTYRDPITLAVGHTLKGRRDILDFPAGTVFYLPR LKKYAIVEDTCGDGPRPQDGPCHTGARGYPWLDLWVGGQTVSPAQSEKCQYKITAVQM VYLDPKPNYEVYPGEVIASGCAVH" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 344356..344730 /locus_tag="Silicibacter_356" /translation="MSILRAIFAIPLIALFLIGPLIESAAHAKGAGCLNVQCCDRGPE ETLVSKTEVSKTDPSTQMEASAGDDLAMKGTCALMACQAAALVGVPAMVHPLTFQTSS WVQIDLSPLSQGPSALDRPPNS" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 344788..345219 /locus_tag="Silicibacter_357" /translation="MNQKYLILGASVALAAAAFVFLRPEASGTAARSPSGDTASLAAI TIPDLAGNQIVGRNIFETSCAACHGAQGGGNPEAGPPLIHKIYEPSHHGDESFQRAVA NGVRAHHWHFGDMPPVEGLTRGNVAMVIDYIRAVQRANGIN" /product="cytochrome c family protein" /transl_table=11 /note="identified by match to putative ortholog SPOA0359 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 345222..345572 /locus_tag="Silicibacter_358" /translation="MKTMKKTALIVWLACISSGAFAHSRVDTTTPADGDVMSEVPAQI SFDFADDIRLTRVEMTHAEHPSVQLDLGDQKSFDRAFNLPLNDMGAGTYQIEWRGLSI DGHAMQGGFTFEVE" /product="Protein yobA precursor." /transl_table=11 /note=", Copper resistance protein CopC, Copper resistance protein CopC" /note="Conserved hypothetical protein" CDS 345575..346441 /locus_tag="Silicibacter_359" /translation="MPDIWAQAAILVKVLLYVGALGATGLVMIRLIFAAQTAPAEALL RRQIRSLGAVALIAAGLGFSLQGAALTGGLDGMTDPEMLGLLWQTPVGDVLLYRLIGA SLLVVGPAFLRVGEWGALAGGCLLLWSFAQVGHVPNLAQTGVQALLFLHLLGVAFWIG VLSPLHWLCQRRDHLQAAAQLGHRFGQIAQYGVPALVGAGAVLGALLLGSVSALLGTS YGLAFVTKIALVGAILALAAANKLRFVPAMAAGDSAAARHLAISLRVEGAAFLAVLSA TAALTSLFSVPG" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 346583..347014 /locus_tag="Silicibacter_360" /translation="MRRFLAIATCLVASGAMADHELEGRDLDRGQALYGDYCAACHGA NLEGQPDWQTPGADGVLPAPPHDETGHTWHHDNQLLFDYTKQGGAEALAARGVSGFPS GMPAFADSLSDEEIWDILAYIRSTWPKRVQDIHADRNPRHD" /product="cytochrome c family protein" /transl_table=11 /note="identified by match to putative ortholog SPOA0361 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 349291..349899 /locus_tag="Silicibacter_362" /function="COG: Uncharacterized conserved protein" /translation="MAWIKTVAFGDATGKLRKLYDRVTGPGGNVDNIMMAHSLRPHTM EGHMALYKNVLHHSGNELPKWVLEMIGVWVSSLNGCAYCVEHHFAGLKRLMRDDARAE AIRAAIEARDIKALPVRACEMAAMDYARKLTQAPTEMMAADLEPLRAEGLSDGHILEI NQVVAYFAYANRTVLGLGCSTEGDVLGLSPGNSDDPTDWGHA" /product="alkylhydroperoxidase AhpD family core domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1255 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(347120..349297) /locus_tag="Silicibacter_361" /function="COG: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit" /gene="parE" /transl_table=11 /note="identified by match to putative ortholog SPO1253 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" /product="DNA topoisomerase IV, B subunit" /translation="MPSTTSSDARSILLPQCDVSIVKRAGFDHISSDLCSTPPQSSIC VDPRRPLSPPDDMRHNEIKPHQRMSSDPHMADDLLSPSSSDTYDASSIEVLEGLEPVR QRPGMYIGGTDERALHHMVAEILDNSMDEAVAGHANRIEVELHADYSLTVRDNGRGIP IDPHPKFPDKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGSSVVNALSDSLVVQVAK NKELFEQRFSRGKPLGGVEKIGAAPNRRGTTVTFHADEQIFGSHRFKPARLFKLVRSK AYLFSGVEIRWKSAIDDGETPQEATFHFPGGLRDYLTEVLGKSSVYADAPFAGKVEFR EKFGEPGYVEWAINWTPSRDGFTQSYCNTVPTPEGGTHVAGFWSAILKGIKAYGELVG NKKAGQITRDDLMAGGCALVSCFIADPAFVGQTKDRLSTEAAAKMVENSVRDHFDNWL AADTKSAGAILDFLILRAEERLRRRQEKETARKSATKKLRLPGKLTDCTSKDRSGTEL FIVEGDSAGGSGKGARNREYQALLPLKGKILNVLGAASGKLTSNAEIRDLCEALGVGL GTKFNLDDLRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDGGHLYLACPPLFRL TQGAKRVYCLDEAERDMWMEKGLGGKGKIDVSRFKGLGEMDAKDLKETTMDPKTRKLI RVTIDEDEPGETSDLVERLMGKKPELRFQYIQENAKFVEELDV" /EC_number="5.99.1.-" CDS 349996..350634 /locus_tag="Silicibacter_363" /translation="MIRTFATLAVLAAPLPVLAHPHIFVDSGLKLEVDAEGFLKAAEV TWVYDDFYTLLVFEDMMLDSDFDGALTPAELERLKGFDLNWVEGYEGDLYLTQRDTQL SLGAPEHLSTEVRDGVIITRHRRPVTEPVPVLANGVTARMYDPTYYTAYDLNRGVEIT GPCAAQVTPPNLDQAYTLVEELLYSMPTEQAEDAFPEVGSAFASTVAVACEG" /product="Hypothetical protein HI1249 precursor." /transl_table=11 /note="Conserved hypothetical protein" CDS 350639..351721 /locus_tag="Silicibacter_364" /function="COG: ABC-type uncharacterized transport system, permease component" /translation="MRHLPGIVLAITLVALAALAIWLWGLGGADHILRAASEAQRDAQ NAMARGLRALKGGQPGAWWGLMGVCFAYGFFHAAGPGHGKLVIGGYGLGSAVTLWRLS ALAVASSLAQAATAVLLVLSGVWLFDWGRERLTATAEDLLAPVSYALMALLGLYLLLR GLRRGWRLRAAEAGPHAHADHHHVPAGTGGAQDHAPVALQSVGTHHNHHHDHQHHDHD HHDHHDHGHNHHAHGPGEVCASCGHRHGPTLQEAASLRSWREAVAIILSIAARPCTGA VFLLLLTWRLDVLGAGVAGTFAMGLGTASVTLCVALLAAGVRGGLLMRVLSAGGNRGA QMAAALEIAAGALVLALCLQLLLRSL" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO0884 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 351883..353301 /locus_tag="Silicibacter_365" /function="COG: Na+-driven multidrug efflux pump" /translation="MARIDPTPQMSYGGHIRAVSILGLPLIGGHLAQFAIGLTDTVML GWYGVNELAAVTLAGSFFFVWFILGAGFAFAVMPMVASATATDDHRRIRRATRMGLWL SIVYGVLSMPLMWYSETILLAAGQEAQVAADAGTYLRIAGWGIFPALLVMVFKSYLAG LERTQVVLWITVLAAVINAIVNYVLIFGHLGLPEMGLQGAALASLATQTVSVVAVVAY ALWRLPEHDLLRNLQRPDWEMMREIVRHGLPIGLTTLCEVSLFSASALMMGWLGTVPL AAHGIAVSVAGLTFMAHLGLSNAATIRVGNALGRGDKTHMVRGAIVVTLASLGIAVAT AMVFFLAPEPLILLFLDPEDPQKTEILAIGVSLLAMAGLFQLMDGMQAIALGLLRGLL DTGVPMVMAALSYWAVGVPTSYILGFRAEMGGVGVWIGLILGLSTAGVLLLLRFWFHA LRRVPTAPTGEMRADEIMADPV" /product="MATE efflux family protein" /transl_table=11 /note="identified by match to putative ortholog SPO1260 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(353371..353787) /locus_tag="Silicibacter_366" /translation="MTTALPEYYFRVRENGAMVFRLDTENRNRRIEMDQIAVINLKKG EIKPHGDRSLSAEDLSAIEAWMEERRTLLAQREMDDILRAVDHLNLTAQWAQSRASDA QLERVTDTLLMAMHDLRSVLVRKKADRLAKAEKASG" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1263 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(354070..354882) /locus_tag="Silicibacter_367" /function="COG: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases" /translation="MRILFLGDVMGRAGRAAITETLPRLRDEWRLDFVVVNGENASNG MGLSGEHAKILFEAGADCVTLGDHAFDQKDMLQYIEQDSRIVRPLNFAKGAPGRGHRL FTARGGQKVLVLQALGQVFMKRAFDDPFGAVEGVLKSHPRGGLAQAIIVDMHCEATSE KMAMGHFCNGKASLVVGTHTHVPTGDAQILEGGTAYLTDAGMCGDYNSVIGMDKAEPM RRFLTGMPKSRFTPATGAATLSGVYVETDDRTGAAKRIEMVRQGGLLQQAAP" /product="Hypothetical protein MG246." /transl_table=11 /note=", Conserved hypothetical protein 282, TIGR00282: conserved hypothetical protein TIGR00282" /note="Conserved hypothetical protein" CDS 355259..356098 /locus_tag="Silicibacter_368" /translation="MSTPVLNLDPDTLLMSSKDARAAAAPYAAEYQGRGPFNYGGYDN FLNPEILERVREELKQLPEAANSYDRPQERLKTSYVPERLPMYTRQLFYALNSRPMLA FIEELTGIKGLIPDPYFAGGGVHVVANGGHLDIHADFNHHAGLNLERRVNLLIYLNKD WREEYGGSFEVWDENMAGKLASYVPLFNRMCMFSTSSESWHGNPEPVNHPDGEPRMSI ALYYYTATWDSTRKSHTTLFKPRPGTKDQRDRQVARRELLQDLLPPVLHRKLAWRLEK LGF" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(356263..356850) /locus_tag="Silicibacter_369" /function="COG: 5-formyltetrahydrofolate cyclo-ligase" /translation="MSDTDRDAGDLTAIKAAARKAAFVRRKGAFETQRPGAAGHLAEV LAGYRGVPLAGYMPIRTEIDPLGVMAEAAAHGPVGVPVIQGAGLPLKFSRWQPEGALR DGPFGAKVPEVDDYFDPEILIVPLVAFDAAGNRLGYGGGFYDRTLDRLRAQRATLAIG FAFDAQEAEGLPLEPTDQPLDMIVTESRVLDFKRP" /product="5-formyltetrahydrofolate cyclo-ligase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2954 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(356873..358261) /locus_tag="Silicibacter_370" /function="COG: Mg/Co/Ni transporter MgtE (contains CBS domain)" /gene="mgtE" /translation="MTTGENTPEAETMGEDAYELDRKRVAQILFALDRDDRDALVELM DPLHPADIADLLEQINAYDRGRLIRLYDKEFDGDILSELDESIREEVIAALNPEVLAD AVRDLDSDDVVDLLEDLEEPQQEAILDALEDSDRVAIEQSLSYPENSAGRLMQREVVT APEHWTVGQAIDHMREAEELPEQFYHVVIVDPRMHPIGQVTLGRLMSSRRTKPLIEIL EETFQVIPVGQDEEDVAYAFNQYHLISAPVVDEGGRLVGAITIDDAMAVLDEEHEEDI LRLAGVGEGSLSDRVSETTKQRFPWLAVNLVTAIFASLVIAQFEATIAQFVALAVLMP IVASMGGNAGTQSLTVAVRALATRDLTGSNVWRVIRREVLVGLINGGIFAVVMGVIGV VWFGTPMLGVVIAAAMVINLVVAGLAGTVIPVILDRIGIDPALASGAFVTTVTDVVGF FAFLGLAGAVLI" /product="magnesium transporter" /transl_table=11 /note="identified by match to putative ortholog SPO2955 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 358400..359689 /locus_tag="Silicibacter_371" /function="COG: Cytosine deaminase and related metal-dependent hydrolases" /translation="MKQDLILLGRVLSFCASPFAPDGPEAAVEEHEAIALRAGKIVAL GSRAALSKVLPEAEIVDHGQKLIVPGFVDAHVHYPQTAIIASWGKRLIDWLNTYTFPE EMRFGNPAYAAEIAARYLDLTTACGTTTVASYCTIHPESVDALFEAAQARGQRVVAGK TCMDRNAPEGLRDTPQSAYDDSAALIQRWHGRERLIYAITPRFSPTSTPEQLEALGAL WTAHPTCLMQTHLSEQLDEIEWVRTLFPEARDYLDTYERYGLLREGALFGHAIHLEPR ERARLLEARASLIHCPTSNTFIGSGLFDMNGLMREGHRIGLATDTGGGSSFSMLRTMA AAYEVAQLRGTPLHAAQLLWLATLGSATALGLQDKVGNLAVGREADLVVLDLASTPAI AQRATRAETLWEALFPTLMMGDDRAIAEVRINGQKAV" /product="guanine deaminase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO2956 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(359788..361128) /locus_tag="Silicibacter_372" /function="COG: Cytosine deaminase and related metal-dependent hydrolases" /translation="MTDFLLKNAQTVLTMDDDRRVLHAVDIRVRAGVIAEIGPTLGGA ETKVDVSGAVVTPGLVNTHHHLYQNLTRAVPGGQDALLFGWLQTLYPIWARMGPEHLE VSTQLGLAELALSGCSLTSDHLYLFPNGGRLEDTIHAAAEVGLRFHPTRGAMSIGESD GGLPPDSLVEREADILADMIRLVDAYHDPSDGAMCRVGLAPCSPFSVSRELMRDTALL ARDKGVMLHTHLAENDEDIAYSEAQFGCRPGQYAEDLGWTGDDVWHAHCVKLDVEEID LFAKTRTGVAHCPCSNCRLGSGIAPVRQMRDAGVKVGLGVDGSASNDMASLWDEARQA LLLQRVANGADAMSAYEALEIATRGGADVLGRPDCGRIAVGKRADIAVWDVSGLASSG SWDPAALVLAGPRQVRDLFVEGRQVVASGRLTTVDTAAVIRRHGALAQALANGD" /product="hydroxydechloroatrazine ethylaminohydrolase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO2957 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(361339..362133) /locus_tag="Silicibacter_373" /function="COG: 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase" /translation="MTHPSTLSDLDVARRLAEAARAAILPHFRNSATAADNKLEAGFD PVTVADRAAEEAMRAVLRKLRPDDGVLGEEFAATTGTSGRTWVLDPIDGTRGFISGTP TWGVLIALSDAKGPMLGIIDQPYIGERFEGCRGHAQVVGPHGTRPLLTRKTEALSEAI LFTTFPEVGTEAERTGFEQVAQHVKLTRYGMDCYAYALLAAGTVDLVIEAGLNAYDIQ APIAVIEAAGGLVTNWQGGAAHEGGRALAASNPTIHAAALELLREA" /product="inositol monophosphatase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2958 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(362421..362792) /locus_tag="Silicibacter_374" /translation="MAHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETG ANRVSASRLWDISDALDVNISFFFEGLQDETKSVPDKARVPADLMGDKEALDLVRSYY AIPENQRRRLFELARVLSDVA" /product="DNA-binding protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO2959 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 363157..364131 /locus_tag="Silicibacter_375" /function="COG: NADPH:quinone reductase and related Zn-dependent oxidoreductases" /translation="MLSFRIVKHGTNGTLCDTPFAPPGPGQIEIEIHACALNFADLLM IKGNYQDTPSLPFTPGLECAGRITAVGPQISNFRIGDRVAVFGGQGGLAEIGVFDAAR AVPIPDTVSYEDAAAALIAHGTSLLALEHLARLQPGERLLVTGAAGGVGLTAVEIGKL MGAEVIAQARGAEKLAVAKAAGADHLIDASDDLRQRVKDLGGADVVYDAVGGDTWEAA FRATNPGGRLLPIGFAGGAVPQIPANHLLVKNLTVFGFYIGGLIKLRPELGQQTFETL MRWLAEGRITPHISHRLPLSETDAGLELIRSRAATGKVIIQPQAGRVR" /product="oxidoreductase, zinc-binding dehydrogenase family" /transl_table=11 /note="identified by match to putative ortholog SPO2960 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(364100..365017) /locus_tag="Silicibacter_376" /function="COG: Transcriptional regulator" /translation="MRNLDITTLRSFVAVADTGGVTRAASFLHLTQSAVSMQLKRLEE MLGVELLDRSGRNIGLTSAGEQLLGFARKMLSLNDEIITRLTDQAFEGEVTLGVPHDV VHPVIPMVMQRFNVQFPRVKVNLCTSNTRDLKMDFAQGRFDLIVTTETTASEGGEVIH QMPLRWIGALGGQTWRQRPLRIGFCRNCIFRGLATAALDDAGIPWEMAVDSESDRTVE ATVSADLAVGVLLEGTQPAHQQVIDHGGSLPQLPVQHINLYGAERSRAQYVDHLASLI RQGFAGLSQPGLRAVGTEMVSAPVQLGVV" /product="transcriptional regulator, LysR family" /transl_table=11 /note="identified by match to putative ortholog SPO2961 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 365140..365352 /locus_tag="Silicibacter_377" /translation="MANCIEHSRPIPLRRPSLLSTITQMIALRRQRQHLDRLSDEQLK DIGVTRDQAEAEARRKAWDAPNFWLS" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note=", Protein of unknown function DUF1127" /note="Hypothetical protein" CDS 365581..366360 /locus_tag="Silicibacter_378" /function="COG: Integral membrane protein, interacts with FtsH" /translation="MAQFDSIRSAAGARSAEIDAGLRAHMNKVYGTMSVGTLITFLAA WAIAGLSVTSDPANAVAQLSSDSYLTNFGYAIYASPLKWVIMFAPLAFVFFGFGAAVN RLSAAGVQVVFYAFAALMGLSISSIFVTFTGESIAQVFLVTSIAFAGLSLVGYTTKKD LSGMGSFLIMGLIGLIVASVVNIFLASSAMAFAISVIGVLIFAGLTAYDTQRIKNDYL QMAHAGDQEWLGKAAIMGALSLYLDFINMFMMLLQLLGNRE" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO2963 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 366464..367003 /locus_tag="Silicibacter_379" /translation="MKIEPIGPDRAVRLVPLLEDLHAVHVAHHRDRYTPNPDPAHLSV WLSEWLAEPNVHALAAISPQEALMGYLIYDIEKRPALPVRPAETRAMLHHIAVAAPLR GIGVGKALMTQMKEDALAKGADVIGVTYAPFNAASAALMRHFGLEPVMTMAEWRRPSD EASQEPSQPTSETSPQEAI" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(367105..367269) /locus_tag="Silicibacter_380" /translation="MMRGVNMCKGWFAMKKLFGLSALLLLMPATVALTDHSKADVNLP APVAVEVAQL" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(367539..367706) /locus_tag="Silicibacter_381" /gene="rpmG" /translation="MAKPTTIKIRLNSTAGTGHFYVTKKNARTMTEKMTIRKYDPVAR KHVEYKEGKIK" /product="ribosomal protein L33" /transl_table=11 /note="identified by match to putative ortholog SPO2965 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(368428..369087) /locus_tag="Silicibacter_382" /function="COG: Negative regulator of beta-lactamase expression" /translation="MVSADPIWHPSPNFGARRDGLQPHLIVLHYTAMESAEAALQRLC DPAFEVSAHYLIGGDGRLWQMVAEDHRAWHAGQGEWAGLSDINSRSIGIELDNRGDHP FSEPQMCVLETLMAQIMTRWTIPATGVIGHSDMAPGRKWDPGPRFDWQRLATLGLARP NGQPLAAPAATPEALRKAAQACGFTAEVDDATLLQAVRLRYRPWARGPLCGEDIAPLL S" /product="N-acetylmuramoyl-L-alanine amidase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO2967 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(369097..369861) /locus_tag="Silicibacter_383" /translation="MRVPAILVAVSAIALVACSPQVPDSAAGVGDATSPFNAPPEVEA GRTLNGDPLVPATQISDESTATNTNWQQPRPSGGAAASASDDIARETAAALSAAGQNS GRAPLEASPSNPAPALVGNPNLSDENSFEAVSARQTIESDAERIARQRAQYQVVTPTA VPDRPEDLAPNIVRYALSTSNPRGQRIYSRTGINLQARSARNCAEYPSADLAQTAFLE MGGPKRDRKALDPDGDGYACGWDPAPFRAAVRAAGN" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2968 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(369902..371389) /locus_tag="Silicibacter_384" /function="COG: Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases" /gene="gatA" /transl_table=11 /note="identified by match to putative ortholog SPO2969 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="glutamyl-tRNA(Gln) amidotransferase, A subunit" /translation="MSDLNKLGLAEARDLLRKGDTTSVELTEACLKAIDGADALNAFV HKTPDVALDRAKAADARIAEGDAPAMCGLPIGMKDLFCTKGVDSQAASNILKGFKPEY ESTVSQKLQDAGAVMLGKLNMDEFAMGSSNETSAYGNAISPWRREGDETPLTPGGSSG GSAAAVAADLCLAATGTDTGGSIRQPAAFTGTVGIKPTYGRCSRWGIVAFASSLDQAG PMTKNVRDAAIMLEAMCGHDAKDSTSVDLAVPNFEAMLTGDIKGKKIGIPREYRMDGM PAEIAKLWDEGAAMLKAAGAEIVDISLPHTKYALPAYYVIAPAEASSNLARYDGVRYG HRATLAQGDGITEMYEKTRAEGFGHEVQRRVMVGTYVLSAGFYDAYYNRARKVRTLIK KDFEDVFAAGVDAILTPATPSAAFGLGEMNDEDPVKMYLNDVFTVTVNLAGLPGISVP TGVDTQGLPLGLQLIGRPWDEGDLLNTAYALEQAAGFVAKPAQWW" /EC_number="6.3.5.-" CDS complement(371393..371680) /locus_tag="Silicibacter_385" /gene="gatC" /translation="MSIDQSTAAKVAKLARIKVEEDALPALAEEFNTILGFIEQLNEV DVEGVEPMTSVTPQRLKRREDVVTDGNQQDKVLANAPDAREGFFAVPKVVE" /product="glutamyl-tRNA(Gln) amidotransferase, C subunit" /transl_table=11 /EC_number="6.3.5.-" /note="identified by match to putative ortholog SPO2970 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 372092..372784 /locus_tag="Silicibacter_386" /function="COG: Predicted Zn-dependent hydrolases of the beta-lactamase fold" /translation="MKLIWLGHGGFRLETGETTLLIDPWLTGNPMLEDSQHDAATQGA THILLTHAHFDHVADVLELAKHLSVPIVGQYDLMGYWGETEGVQTVGFNKGGTVTVGD TRVSMVPASHSNTFSTRDGLRTAGSEVGYMIRAEGKTLYVSGDTDIMADMDWMGDYYK PEIGILSAGGHFTMDMKAAAYAAQRYFAFKTVIPCHYRTFPLLEQSAQDLIDGLPGVN VIEPQIMKDIEL" /product="metallo-beta-lactamase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2976 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 372784..373953 /locus_tag="Silicibacter_387" /function="COG: Xaa-Pro aminopeptidase" /translation="MPANDFTTTEYARRLEKTRRAMAAKGLKTLVICDPSNMAWLTGY DGWSFYVPQAVILHEDGMPMWWGRTQDKPGAALTTWLEADHLFDWPEEHVQHPDHHPF DSLVDLLREFGWTEAIGVEMDNYYYSARSHEILETAFGRDAFADATGLVNWQRAVKSE QELQLMQAAGKLSAHMHGVLRAEFNEGIAKNALVARVQAAGIEGLPLLAGDYPAISPI APSGIEASASHITWNDRPLAPGEATYFEISGCVRRYHCPISRTLFLGSPPEDIRRGEN AILQAIEDTFAVAKPGVTCEEVAACVYESFGRAGYIKGNRTGYPVGLSYPPDWGERTM SLRPGDTTKLEENMTFHLMPGLWTPDWGMAITETFVVTPNGGEPLADVPREIVVK" /product="peptidase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1140 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(374174..374776) /locus_tag="Silicibacter_388" /function="COG: 3-methyladenine DNA glycosylase" /gene="tag" /transl_table=11 /note="identified by match to putative ortholog SPO1900 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="DNA-3-methyladenine glycosylase I" /translation="MSRVVTGGDGRTRCAWSASAPEFDAYHDTEWGFPVGDDRRLFEK ICLESFQSGLSWRTILAKRENFRAAFDGFDYHAMAAYGPEKVAALLQDAGIIRHRGKI EAVINNAARAVEMEQSEGALAAFFWRYEVETPPEPQTVSTCPESVALSKELKTRGWKF VGPTTCFAFMQAMGLVNDHAEGCYCRPIAAAARQGFAKPV" /EC_number="3.2.2.20" CDS complement(374773..375066) /locus_tag="Silicibacter_389" /translation="MFVICLKLTADRERISGVLEAHKAWLAQGFEDGVFLLAGALDDG PGGLILAVGEDRAALEERLATDPFVRDGLVAVDITAFTPSQADPRLSFLKVAA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1901 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(375098..375667) /locus_tag="Silicibacter_390" /translation="MAQTRERIVAQADELFYTRGFEATSLADIAAPLGLSRGNFYYHF KTKDEILEAVIDLRLERTALMLRAWETESDTPLDRIICFIRILIQNRSKIMAWGCPVG TLVSELSKLEHVAHTHAAELFRLFIDWLAEEFRRAGRTQDAEALATHLMGRSQGVAAL AQAFADPALIEAEVQQMTDWARQQIAAPA" /product="transcription regulator, TetR family" /transl_table=11 /note="identified by match to putative ortholog SPO1902 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(375764..375862) /locus_tag="Silicibacter_391" /translation="MLLSMLWSGEENPRERLLLRQMLKVSQDGLLN" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(375865..376107) /locus_tag="Silicibacter_392" /translation="MRPPPEALLRRFDLRDPDWVAGTRHAQVWKVRLRSGDWGALKHY PAGHLSNEATGLLFLERANGERSRDAAPARSCTGRS" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(376104..376538) /locus_tag="Silicibacter_393" /function="COG: Cytosine/adenosine deaminases" /translation="MAEALDEARAAAARGEVPVGAVLVSPEGKVVARAGNRTRELNDP TAHAEVLAIRAACAALGSERLLGHDLYVTLEPCAMCAAAIAAARIARVYYGASDPKSG GVAHGACVFDHPQSHHAPEVYEGFSAAQSEALLRAFFALRRK" /product="cytidine and deoxycytidylate deaminase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2983 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 376652..377920 /locus_tag="Silicibacter_394" /function="COG: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases" /translation="MLSPLSRIGYGSAMSKKTPSKPPARRAANAARPKATPSATPRAH KGLQAGAPADARPSQDGDRIAKVLSRAGVASRREAERMIAEGRVAVNGKVIDSPALNV TNLDRIVVDGNPLPEAEAPRLWLYYKPNGLVTTTSDEKGRKTIFDALPEDLPRVMTVG RLDLNSEGLLLLTNDGGVKRQLELPSTGWLRRYRVRINGRPQDHEFDVLRKGVVIDGE RFQPMTISLDRQQGANAWLTIGLREGKNREIRRAMEEVGYPVNRLLRISYGPFQLGTL KEGEVEELRPRVVRDQLGLAAPEGDGEAKKKPTRPGRGPRNPGAKTAGKGIGAPNARP TGKGAVKAPEGRVFSGKTFSGKTTGKTAGKPAAHKGQGGKPSGPKSFGTKQGGGSGAR GSGKPNGASGGASGGKFSPGGRRFGKKPQD" /product="RNA pseudouridylate synthase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2984 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 378087..378995 /locus_tag="Silicibacter_396" /translation="MAQRFGGKYSPSGQDGARPDGRPTSSSRMTATARVNPVGLRANL MFVPAAVMMLFSLASGAAGLVLGLISAGLWAASAVMLREGLKAEAAYDDRKVARRPAL PRKILAASLCGLGGAVGAWSSEPGVITAALYGVACVGLHLAAFGLDPLSDKGVEGIDD FQSARVARVVDEAETHLAAMKDAVLRAKDRSVELRVDQFQAVARDLCRTVEEDPRDLT AARKYLTVYLLGARDATIKFADIFARSGSTEARADYLALLDDLEQNFAARNEKLLLED RGDLNIEIDVLRARLEREGVQLDRPS" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2985 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(377966..378088) /locus_tag="Silicibacter_395" /translation="MRQTPTIQPVPMPSIRINSATYATVCTSFAPKNVPQPLET" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 379018..380208 /locus_tag="Silicibacter_397" /function="COG: Uncharacterized protein involved in tellurite resistance" /translation="MSETIQQKAVEAETLVKEVTEVSLPDPKGELATLEAADPETTTA IRRRIDEIDMGDTNSIISFGSAAQGELQQISQAMLTDVRNKDVGPAGDSLREIVTTIR GFSVSELDVRRKPTFWERLLGRAAPFAKFTARYESVQGQIDKITDSLLAHEHTLLKDI KSLDVLYEKTLNFYDELALYIAAGEAKLAELDSTEIPALEAAVEAAAENDQVIKAQEL RDLRAARDDLERRVHDLKLTRQVTMQSLPSIRLVQENDKSLVTKINSTLVNTVPLWET QLAQAVTIQRSAEAANAVRDANNLTNELLTANAANLRESNKVIREEMERGVFDIEAVK QANADLIGTIEESLQIADEGKRKRAEAEADLKKMEAELRDTLAAAKARKDGVGDTAAT SVPK" /product="tellurite resistance protein" /transl_table=11 /note="identified by match to putative ortholog SPO2986 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 380168..381172 /locus_tag="Silicibacter_398" /translation="MGSATRRPPRFQSEPARVNPDTDTVLRPRPLGAVLAMGAALLLG GCLALAPGPKDTPRPTPRPVAPVYTPSVESQTLAKYYADLEQDLLTRGLLRTDGGGPE TPYDAEDLAERFETLAFYDEYASATDGGAGGMGRWERPVQLVPVFGPSVTPAQEARDR ASLTAYAARLARITGHPITVGTSGNFTVLFAGIDDADFVETKVRRLLPNLSDRDVALF ATPPRKFYCLVFAGGPQSDPLNYTRGVALIRAEQPNLMRESCIHEEIAQGLGLRNDSP KARPSIFNDDDEFARLTSHDEKLLQMLYDRRLRVGMSAEEARPAIERMAREVMGELSN " /product="lipoprotein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO2987 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(381195..381818) /locus_tag="Silicibacter_399" /function="COG: Glutathione S-transferase" /gene="gstA" /transl_table=11 /note=", [EC:2.5.1.18] , Glutathione S-transferase, C-terminal-like" /note="High confidence in function and specificity" /product="putative glutathione transferase" /translation="MIDLYTWNTPNGRKVSILLEELNVPYTAHAIDIATGAQMAPAFL AISPNNKIPAIRDQETGVTLMESGAILIYLAEKHGQFLPPEQRIEIYEWLMWQMAGFG PMLGQAHHFLKYNRGASDYAEERYGAEARRLYGVLDRRLEGRDYIVNDYSIADMACWP WVSRYEWQDIDLRDFPNVRRWYQAIAARPAVQRGYHLPDHVNEIPQG" /EC_number="2.5.1.18" CDS complement(381928..383640) /locus_tag="Silicibacter_400" /function="COG: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase]" /gene="iivG" /transl_table=11 /note=", [EC:2.2.1.6] , Acetolactate synthase large subunit (EC 2.2.1.6) (AHAS) (Acetohydroxy- acid synthase large subunit) (ALS)., Pyruvate decarboxylase, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain, acolac_lg: acetolactate synthase, large subunit, biosynthetic type" /note="High confidence in function and specificity" /product="acetolactate synthase large subunit" /translation="MSSDTAQPASASRRSGGRVLADQLQILGADTIYCVPGESYLELL DGLHAHQESINVVTCRHESGASNMADAYGKLTGKPGICAVTRGPGATNASNGVHTAFQ DSTPMILLIGQVGREMVDREAFQEIDYRRMFGQMAKWVAQIDDAARIPEYMARAWKTA LSGRPGPVVLALPEDMLTDEVTVADLRVTPPARPAPAAHDIEALSAMIARAKKPMLMV GGPSWSEACADKALAFAERLGLPVTTSFRSQDYVNNGHDNYVGPVGIAPIPNLRKRLR EEVDLLITVGPRLGEMTTQGYELIDIPHPQMTFVHVHPGAEELGQVYQPDLAIQSDPE LFFDAAEAITLPSQPEGWADWVQQQRADYLAFQTPTEVPGDVNMGHVVRHMSETLPED TIYTNGAGNYTVWLHRFHQHRAYRTQLAPTSGSMGYGVPAAVAAKLAHPDRTVVAMAG DGCFMMTSQELATAAQHGADVIYVVVNNGMYGTIRMHQERHHPGKVMATKLVNPDFVA YAASFGIAGERVLRTEDFPAALERARTTKGGYMIEIVVDPEALTPNQSLSAVRAEGQG KANA" /EC_number="2.2.1.6" CDS complement(384212..386452) /locus_tag="Silicibacter_401" /function="COG: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria)" /translation="MVENTESESRKLLGRLREAMAGDDAGQARLDKITQLIADSMGTE VCSIYLFRDEDTLELCATEGLNRESVHQTRMRVGEGLVGRVARTGKVINTPDAPSARG FRYMPETGEERFSSFLGIPIQRLGEMMGVLVVQSKESREYSADAVYALEVVAMVIAEM TELGAFVGEGSAMSPLHQQSVLLKGIAAQEGAAEGNIWLHEPRVVVTNPIADDPHREL ERLQEAVEELRVGVDKMLQVSSNGDKEQAQVLETYRMFANSKGWMRRMEEDIARGLSA EAAVEKEQSLARGRMAQVQDAYLRERLSDLDDLSNRLLRILTGQGKDTGAELPENPIL VARNIGPAELLEYGRSLKGIILEEGSVGSHAAIVARALAIPLVVRVARITTEGLNGDH VLVDGDNAVVHLRPDDPVVSAFRDKIAMQAKAQERYSSIREKPAITVDGKRINLMMNA GLMADLPSLENSGAEGVGLFRTELQFLVRNQMPKRSELKGLYQRVLEAAGGKRVVFRT LDIGSDKVLPYMKPTDEPNPALGWRAIRVGLDKPGVMRMQLQALIRAANGGPLTVMFP FVAQFEEYRLAREEVNKTIERERRLGHVLPSTLEIGAMLETPSLGFAPLKFFEEVDFL SIGGNDLKQFFFAADRENERVRRRYDTLNVSFLSFIERIVERCDISGTPLSFCGEDAG RPIEAVCLAAMGIRTLSMRPASIGPVKSLLMRVDLGELRKIISDARHRGDQTVRPAVM QYLREL" /product="phosphoenolpyruvate-protein phosphotransferase" /transl_table=11 /EC_number="2.7.3.9" /note="identified by match to putative ortholog SPO3034 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(386798..388036) /locus_tag="Silicibacter_402" /function="COG: Aspartokinases" /translation="MPLLVMKFGGTSVANLDRIRRAAKRVGVEVAKGYDVIVIVSAMS GKTNELVGWVGETSPLYDAREYDAVVSSGENVTAGLMALTLQEMDVPARSWQGWQVPL KTNSAHSQARIEEIGTENINQKFGEGMKVAVVAGFQGISPEGRITTLGRGGSDTTAVA FAAAFGAERCDIYTDVDGVYTTDPRICEKARKLDKIAFEEMLELASLGAKVLQTRSVE LAMRYKVKLRVLSSFEEQSDEAGTLVCDEEEIMESNVVNGVAYSRDEAKLTCLSVADR PGIAATIFGCLSDAGVNVDMIVQNISEDGRTDMTFSCPTDQVQRAEMALNAYKEKGEL NFAELVADTGVAKISVVGIGMRSQSGVAAKMFKVLSDEGINIKVITTSEIKISVLVDR KYMELAVQALHDAFELDKAS" /product="aspartate kinase, monofunctional class" /transl_table=11 /EC_number="2.7.2.4" /note="identified by match to putative ortholog SPO3035 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(388171..389619) /locus_tag="Silicibacter_403" /function="COG: Trk-type K+ transport systems, membrane components" /gene="trkH-1" /translation="MLDLRPVGYVIGLLVVILGGTMVFPLLLDLYDGKGEWPVFLESA LFCFLVGGVLALTCANGVGRGLSIRQTFLLTTLVWVVLPIFGALPLMLGATELSFTDA FFEAMSGLTTTGSTVISGLDDLPRGLLLWRGILQWLGGIGIIVVAMVFLPELRVGGMQ IFKSEAFDTMGKILPRAQEIAKQISVIYLVLTLVCALVYTVLGMGLFDAVVHAMTTMS TGGFSNYDASFGTFSGPAEYAAAIFMVVAALPFVRYVQMVNGKTLPLFQDSQVRAFMA TILLLVAITAGVLVTIFPHHPEQAVREALFNIISIMSGTGYASVDYMAWGPFLIMIFF FIGLIGGCAGSTACSVKIFRYQLLFASIRVQVQRIRSPNGVFVPRYEGRPVTPDVLSS VISFFMFFVITLGIVAWALALTGLDFITAISGAATAVANIGPGLGDIIGPAGNFAPLN DTAKWILAIAMLIGRLELMAVYAILTVRFWRS" /product="Trk system potassium uptake protein TrkH" /transl_table=11 /note="identified by match to putative ortholog SPO1353 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 389683..389958 /locus_tag="Silicibacter_405" /translation="MSSVLCAAVAGIAGGADGARGRLRAGACVVPEAAAAPSGRDTSF TSGAVFCSAAAGVSALAFVAGGVLRAELSAGDAGAATAVGCPDAEAG" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(389667..390434) /locus_tag="Silicibacter_404" /translation="MIRFEGFKDIPTTPQAWAGYALGRQLRMMRALATLAADAPQRQL EMTQALLKAQQEWISGLPNATAAVGEDAVAPARKPPEPRKPAARKPAARKVSTPTAST KTTSRKTTASKATSTKASSAKTAAPQTPAPKTPGPKTPAQKAPARKTTARKAAAAKAQ PASASGQPTAVAAPASPAESSARKTPPATKAKADTPAAAEQKTAPEVKDVSRPEGAAA ASGTTQAPARKRPRAPSAPPAMPATAAHNTEDTKSES" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(390660..391763) /locus_tag="Silicibacter_406" /translation="MNIHSRDVNETPDRSDAEQALAVLRRWAGEASETEVAQLDPAIA RLLPGQELQNYPDLKRQYPDDFDANESYRATLPDLQNGPSSLIRGAKEQIQHVGISNF RLPIRFHTRDNGDLTLETSVTGTVSLDAEKKGINMSRIMRSFYKHAEKVFSFDVMEAA LEDYLSDLESGDARLQMRFSFPVKVQSLRSGLSGYQYYDVALELVQMAGQRHRIVHLD YVYSSTCPCSLELSEHARQARGQLATPHSQRSVARISVQMEQDGGCLWFEDLIDHCRR AVPTETQVMVKREDEQAFAELNAANPIFVEDAARLFCEALQSDARVGDFRVVASHQES LHSHDAVSVLTQGTMFAAPSLDPQLFSTLIHRG" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1352 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(391965..393152) /locus_tag="Silicibacter_407" /function="COG: O-acetylhomoserine sulfhydrylase" /gene="metZ" /transl_table=11 /note="identified by match to putative ortholog SPO1351 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="O-succinylhomoserine sulfhydrylase" /translation="MTESWNKRTKLVHGGTRRSQYNEVSEAIFLTQGFVYDSAEQAEA RFIETGADEFIYARYGNPTVAMFEERIALLEGAEDAFATASGMAAVNGALTSILKAGD HVVSAKALFGSCLYILENILTRYGVEVTFVDGTDLDQWRAAVRPDTKAVFFESMSNPT LEVIDIEGVAEIAHAVGATVVVDNVFSTPVFSNAIAQGADVVVYSATKHIDGQGRALG GVVLGTKDYIRGTLEPYMKHTGGSLSPFHAWMFVKGLETIDLRVNAQAASALKIAEAF ESHPVLARTIYPGLKTHAQNALVQRQLGGKGGTVLSLDLKGGKEAAFAFLNALSIPVI SNNLGDAKSIATHPATTTHQRLSEAQRAELGITDGLVRFSVGLEDADDLIADLSQALQ TLA" /EC_number="4.2.99.-" CDS 393618..394559 /locus_tag="Silicibacter_408" /translation="MAVIRINAVGDTPVVHARPGPLEEEIARLGPLEGPVIVMIHGYS YKPGLPAHCPHRHILSLDPHHMPWLAPSWPRQLGFGMGRGDEGLAVAFGWNSRGRLAA AQARAIDAGRALARLVEVLHRQAPARPIHLIGHSLGSEVVLRALKDLPVGAVERVISL SGASYQSVATSALTTPAGRAVEFFNITSRENDTFDFLFETLTRRPNRNDRAISKGISA PNAVTLQIDCLETLEQLSRMGHPLGLPERRVCHRSTYLRPGALRLYRQLMRHPEQIPL TRIQSSVPTAPEPRWSRLLRLRPQPGAVPIWQRIELG" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(394756..395391) /locus_tag="Silicibacter_409" /gene="ispZ" /translation="MSEQTSDPSPAARKISPLVKNLLEFGPVVLFFVAYLRLKDQVFE IGGTSYEGFIVVTAGFVPLMILSTLILWRLTGKLSRMQVMTLVLIVVFGGLSVWFNDE RFFKMKPTMIYLLFGGMLGVGLLRGQSYLRVVMEEMMPLQDEGWMILTRRLCAFFFGL AVANEVIWRMMSTETWVYFKTFGLTAAMFLFFMTQARLFQIYGLEEQGEAE" /product="intracellular septation protein A" /transl_table=11 /note="identified by match to putative ortholog SPO1336 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(395436..396344) /locus_tag="Silicibacter_410" /function="COG: Permeases of the drug/metabolite transporter (DMT) superfamily" /translation="MLSEWLISLEGTEAGHQVALILAVSAAFLHAVFGALQKGRHDPW LSRGAIDASYGLMAAPFALFVVPWPEPHMWLIFLGVWAIHVVYKILQAMAYTKGAYTV VYPVVRGTGPLFAVIGAYLLFGETFTLVQWLGVGVLLAGIFGLAVYNYIFLVTARETL GIALLLALATGLFVALYTTYDAYGIRATADPFTFLAWFFMIDGMTMPIYAYWRWRRMG TDRPTVGPLMLRGFFGGLVAFASFGSIMLATRLDKVGEAAVLRETSTVFAALIGWLVL KETVGPRRIALMALIAAGAVIVEMGG" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1337 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(396403..397563) /locus_tag="Silicibacter_411" /function="COG: Signal recognition particle GTPase" /gene="ftsY" /translation="MALFSKLKERLLKSSSRLGKEVDAIVEEGAVAPEQAPDPAPETA SPAAPAAQPAERAPGPEPIEAPAARASTSAPAPIVPSAPAEAPEASRPGLLGRLMGRT KPSEPRRVLDDDMLESLEEMLIASDMGVDTALRVTANIAEGRMGRRVSGREIRELLAA EIARVMEPVARPMPLYPSKPQVVLVVGVNGSGKTTTIGKLASQFRAAGKSVVIAAGDT FRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMTKAEADGADLLMIDTAGRLQN RADLMEELAKIVRVIRKKDPNAPHNTLLVLDATTGQNALSQVETFRQLADVSGLVMTK LDGTAKGGVLVALADKFGLPIHAIGVGEQIDDLSPFDPEEFAAALTGLEEGA" /product="signal recognition particle-docking protein FtsY" /transl_table=11 /note="identified by match to putative ortholog SPO1339 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(397637..398290) /locus_tag="Silicibacter_412" /translation="MINESAMMLETVTLLLAGGFALGYLWQVHADESWSRSGFKTASV LSLALVAGLSTPLLAVALGLCAFGDLALSRPGERAFLAGVGSFAGGHLAYVGLFLSLP DADVTRLWTAPAGWAVIALAGVALAMMSLLARFAGEMRVQVMAYVPVIVAMGLAALTL PTPLIWCAAVMFMISDMVLAVETFVLPPAHPARRLTAPVIWLLYWGAQALFFAVLIL" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1340 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 398428..398838 /locus_tag="Silicibacter_413" /translation="MFSYSLSRTALVLGLALLSAVPLSANDAEEFNSYTQGRTIHFSW EGQAYGAERYLPGQRVIWSFLDGRCVTGEWYMQSGDICFVYEDRPEPQCWRFDIGDNG LSVSIARDDGSVLTLRERLSVRDEMVCLGPEVGV" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1342 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(398907..400415) /locus_tag="Silicibacter_414" /function="COG: Exonuclease VII, large subunit" /gene="xseA" /transl_table=11 /note="identified by match to putative ortholog SPO1344 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="exodeoxyribonuclease VII, large subunit" /translation="MSDLLDDPTPGQNAPEFSVSEISGEVKRTLEGTFGRIRVRGEVG RVFKARSGHLYYDIKDDRSVLACTTWKGQISGLSVVPEEGLEVVVTGRLTAFGGQSKY NMNVDEVAVAGQGALMALLEKRKAQLAAEGLFAPERKKPLPYLPGIIGVITSPSGAVI RDILHRLRDRFPRKVLVWPVAVQGSNSAPEVARAIDGFNALTPGGALPRPDLIIVARG GGSIEDLWGFNEEIVARATAASDIPLISAVGHETDTTLIDYVSDLRAPTPTAAAEHAV PVRLELLGWVENQGARMANAASRAVQLRRQRLGDMARALPRPDTLLETPRQRLDRVSD RLPNALISGVQRRKLTLSDRAASLRPATLRGLVSSRQDKLKNLSSRLTLRPITQDLGR KRDALDRITKRLNTAQSSRIDRQIDRLSATARQLDILSYKATLRRGYAVVRDGAALVT STEGARKAAELSIEFADGTFDVASAPSTTKKSAPKPAAPKAPKTPGEQGSLF" /EC_number="3.1.11.6" CDS 400568..401830 /locus_tag="Silicibacter_415" /function="COG: Phosphoribosylamine-glycine ligase" /translation="MNILILGSGGREHALAWAVMQNPKCDRLIVAPGNAGIAQIADCA SLNAEDGGAVVTFAEENAIDFVIVGPEAPLAAGVADRLRDAGILVFGPSEAAARLEAS KSFTKEICDAANAPTAGYGHFTDAEAAKAHVRANGAPIVVKADGLAAGKGVIVAMDEQ TALDAIDDMFGGAFGGAGAEVVIEEFMEGEEASLFVLCDGEEILSIGTAQDHKRVGEG DTGLNTGGMGAYSPAPVLSAEVEAKAMEEIVKPTMRVMAERGMPYQGVLYAGLMIKDG QPRLVEYNVRFGDPECQVLMMRLGAQALDLMQAAAEGRLADARVNWADDHAITVVMAA AGYPGSYEKGSEIKGLDALPEDSMNMVFHAGTKADGDKILANGGRVLNVTARGESLSE ARDRAYAMVDQIDWPEGFVRRDIGWRAL" /product="Phosphoribosylamine--glycine ligase" /transl_table=11 /EC_number="6.3.4.13" /note=", Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase)., Phosphoribosylglycinamide synthetase, Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain, purD: phosphoribosylamine--glycine ligase" /note="High confidence in function and specificity" CDS complement(402301..403098) /locus_tag="Silicibacter_416" /translation="MGSGGKARRLRARVLPPILRRAAQILSVSLAVLAQAAPGAAREH WRVLGAEFSEPTTRYGHAVLGDDVEYGSLLIRRVETGSTATQTLEIKLPLTHVFEDLE PRLWDVTGDGLPEVVVIETDMSRGAQLAVYDAEGNKRAATPHIGQRNRWLAPIGAADL DGDGHIEIAYIDRPHLAKTLRIWRYEGHNLVEVASATGLTNHKIGQDFITSGLRDCGA GPELITVSAGWSRIITSRLEGGAVISRDLGPFDAEKGLRATLACAAN" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1347 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(403098..403490) /locus_tag="Silicibacter_417" /function="COG: Ferredoxin" /translation="MGLARCRRQRYTRYRVPKKGRRIMAKITYIEHNGTEHVVDVANG LTVMEGARDNNIPGIEADCGGACACSTCHVYIAPDWVEKLPAKDDMEEDMLDFAFEPD AARSRLTCQIKVTDALDGLVVHMPEKQI" /product="iron-sulfur cluster-binding protein" /transl_table=11 /note="identified by match to putative ortholog SPO1348 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 403558..404274 /locus_tag="Silicibacter_418" /function="COG: Membrane-bound lytic murein transglycosylase B" /translation="MVKAALTRFACAANWSSVGANRDKACAAPNLAPKTKDSPEHMPA SPSQHPAASGLRSASRSAFSPIGSPLPSALRRHALLWVAAALLAGCMTPAPFERVGRP APPGAPPGTCWEPVIIPARIETITEQVMVSPAEAGTDGNAGKPAVFATETRQVITRPR EETYFQTPCPEELTPEYISSLQRALAARGLYVGDITGRLDVDTRAAVRAYQQSLDIQS DTLSLQAARSLGLSAVALDD" /product="lipoprotein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1349 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 404403..405071 /locus_tag="Silicibacter_419" /function="COG: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases" /translation="MAAAPLPASSFLSGASERLRAMLDSQATDVHLETGDVLFERGDE GDALYAIISGALEISTLSAAGRKLSLDMMRPGAIFGEIAMFDPGERTATATAAEPSHL RRLRHRDVLAQLTKHPELAGDMLKLAGQRMRWMNTQLNEQVFLPMPVRLARKLLYLTP ADGNGQLSLSQSELAEFVGATREAVSKTLSNWRKAGLIEISRGGLHLKDRGGLAVLAD PEGI" /product="transcriptional regulator, Crp/Fnr family" /transl_table=11 /note="identified by match to putative ortholog SPO1335 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 405646..406773 /locus_tag="Silicibacter_420" /function="COG: Predicted integral membrane protein" /translation="MPFRVLHFAEPEETVFAEGISEDITTELSRFHAIRITSRMSSFQ FNASERPAQEIATTLGADFILSGTVRRALNRIRVVVELYETLEDRQIWSERFDRADAD IFAVLDEISGLVAACMTGEVQLAETRRTKAKAGQDLTAYEALLVGQDLHKSGDISPRV ATRAVAAFSEAIDAAPDFARAYAWRACSFSRTWDFPVRQDQFDQVSQDVFKALEFDPA EAEAHRIAGAVCRALHEFDRATLHIEKALELNASDAHIAAKSAEHFAFIGQPQRAHDL INKAMALNPMFSGWYWEIIALADYVASQYEEALAAITRAASPTFAGFAYQVGSLLALG RTEEAKEAVALLKAQYPDVTLAVYQRDGRRFAFADGQPQKV" /product="adenylate cyclase" /transl_table=11 /EC_number="4.6.1.1" /note=", [EC:4.6.1.1] , Putative adenylate cyclase 3 (EC 4.6.1.1) (ATP pyrophosphate-lyase 3) (Adenylyl cyclase 3)., Protein prenyltransferase" /note="High confidence in function and specificity" CDS complement(407171..408670) /locus_tag="Silicibacter_421" /function="COG: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain" /translation="MHPISSSKAIGRARVHEGAHSGWRLFWISVLGTALLVMQSLSAA ARPESLAPLAEKVSPAVVNITTSTVVEGRTGPQGIVPEGSPFEDFFREFQDRNGGGTR PRRSSALGSGFVISEDGYIVTNNHVIEGADEIEIEFFPGEGQPADLLPATVVGTDPNT DIALLKVDAPMPLSFVKFGDSDKARVGDWVVAMGNPLGQGFSLSAGIVSARNRALSGS YDDYIQTDAAINRGNSGGPLFNMDGEVVGVNTAILSPNGGSIGIGFSMASNVVTKVVS QLKEFGETRRGWLGVRIQDVTDDLAEAIGLASDEGVLITDVPEGPAKEAGLLARDVIT SFDGFEVKDTRDLVRRVGDTEVGKTVRVVVFRDGKTETIRVTLGRREDAVGNGTEGGG AEAVPDEGEKELLGLTVGVVRDDMREDLNLDAGTTGLVILSVDETSGAWEKGLRAGDV ITEAGQNKLSSIADLEAQIAAAEEGGRKSIFLMVRRAGEPRFVALNLED" /product="periplasmic serine protease, DO/DeqQ family" /transl_table=11 /note="identified by match to putative ortholog SPO1333 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 408948..409634 /locus_tag="Silicibacter_422" /translation="MQRAHHIARSDCPVTPPSGAPRLKGPPPRETCRPRALSRDDVSR SVGADHFKRRTMPSVTLSYKTQDFIEAQKLSTRQSWRDKKRWALLALGSVAAVALLTF TTEPPQRGEMLKIASLLMPSALIGGLWLSQRVSIALHGRRALTASPALRSEFTYEVQP EGLIQRSQHGEAIVKWTEVQAVSEDRKSWLIYPAFLPAQSYLLPKRCLTADFQEALKA QLMAAGAPRK" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(409744..410628) /locus_tag="Silicibacter_423" /function="COG: Membrane protease subunits, stomatin/prohibitin homologs" /gene="hflC" /translation="MNRSVILLVLLGAIVVGALSSLFIVDEREKALVLRFGRVVNVQE DPGLAFKLPFVDEVVKYDDRILSLEVGPLEVTPLDDRRLVVDAFARYRITDVRRFREA VGVGSEAAAESRLDNIMRDQTREVLGTVSSNDILSSDRAALMLRIRNGAIAQARDLGL EVIDVRLKRTDLPQANLEATFARMRAEREREAADEIARGEEAAQRVRAQADRTEVELV SEAEREAEVIRGEADAERNNIFAEAYGADPEFFEFYRSLTAYARALQGGNSSLVLSPD NEFFNYLKSSDGAGRVQQ" /product="HflC protein" /transl_table=11 /note="identified by match to putative ortholog SPO1330 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(410628..411791) /locus_tag="Silicibacter_424" /function="COG: Membrane protease subunits, stomatin/prohibitin homologs" /translation="MAGNSGGPWGGGGSSGGGGNRGNNGGNNGGGGGGRRPDDGQIPE IDELVKKGQEQLRVLMGGRGGNGGNGQGPQGGGSGGSPLFTKGGLMLGAVAAVFLWGY NSFYTVKTEEKSVELFLGEFSAVGNPGLNFAPWPVVTYEVVPVSVEQTESIGAGARGS DAGLMLTGDENIIDVDFQVVWNINEPDKFLFNLRDPKATIQAVSESAMREIIAQSQLA PILNRDRGLISQRLEELIQSTLDSYDAGVNIVRVNFDGADPPEPVKDAFREVQSAGQE RDRLEKQADAYANRKLAAARGQAAQTLEEAEAYRAQVVNQAQGEASRFTAVLSEYEKA PEVTRKRLYLETMEDVLSRVDKIILDDNAGSEGGQGIVPYLPLNEIRRSGGSN" /product="HflK protein" /transl_table=11 /note="identified by match to putative ortholog SPO1329 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(411900..413255) /locus_tag="Silicibacter_425" /function="COG: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes" /gene="gor" /transl_table=11 /note="identified by match to putative ortholog SPO1328 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="glutathione-disulfide reductase" /translation="MSFDYDLFVIGGGSGGVRAARVAAAGGASVALAEEDRYGGTCVI RGCVPKKLMVFASEYSGMVEDGRAYGWDLENKGFDWDHFKQKLNTELDRLEGIYRNLL KNSGVESFDARAKLADAHTVELSDGTRKTAKHILIATGGRPWVPEFPGSELAITSNEM FHLEKLPESILIVGGGYIASEFAGIMNGLGVKTTQYYRGAQILRGFDDEARGLVAQEM IQSGIDLKLGTNVLEMRREGDKIWVKATNGDEGLFDQVMFATGRKPNADNLGLEELGI ARGRGGEIEVDQYSQTAVPSVYAIGDVTDRVNLTPVAIREGMAFVETVFNGNPTSPDH DLIPTAIFTQPEMGTVGLSEEEAAKQETIEVYATSFKPMQQSFAGRAQRVLMKLIVSQ ATRKVLGCHIVAPGAGEMIQLAGIAVKMGATKEDFDRTVAVHPTMSEELVTLKTPVRT I" /EC_number="1.8.1.7" CDS 414208..414648 /locus_tag="Silicibacter_426" /function="COG: Predicted membrane protein" /translation="MRSPLDRLRHALSFEIIALLLIVPLGAAVFHFPLHAIGAVGIVS ATLATLWNLIYNWGFDAILQHWRGSTLKTPMLRVLHAVLFEGGLLIVLMPFIAWYLQV SLWQAFVMDVAFALFYMVYAFGFNWAYDRLFPLKEWQEDHAAQH" /product="putative membrane protein" /transl_table=11 /note=", Bacterial transmembrane pair, Bacterial Transmembrane Pair family" /note="Hypothetical protein" CDS complement(414713..415501) /locus_tag="Silicibacter_427" /function="COG: Ribose 5-phosphate isomerase" /gene="rpiA" /transl_table=11 /note="identified by match to putative ortholog SPO1327 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ribose 5-phosphate isomerase" /translation="MSGDLSPIDKAKFVAAKRAAELVEDGMRVGLGTGSTAAWLVRCL GEMVREDGLKITGVPTSARTAELAREVGIELITLDEARWLDLTIDGADEFDSELNLIK GGGGALLQEKIVATASDQMVVIADKAKEVETLGAFPLPIEVIPFGWQTSQALVEETLI SMDVMGRSSTLRMNGASPYVTDEGNHILDLHLNRIGNPRQLALVLNQIPGVVENGLFI DICDTVVIGYGDGKVEVRDINEGTIETDRIDFVETDNLFADLND" /EC_number="5.3.1.6" CDS 415834..416541 /locus_tag="Silicibacter_428" /function="COG: Glutathione S-transferase" /translation="MTKVLRLHYAPDNASLIVRLALEELGLPYECQLVDRRKAAQKSA AYLQLNPNGTIPVLETPDGPLFETAAILLWLADQNAALAPQPGSAQRGAFLTWLFWCS NTLHADLRQYFYPEKIIGPEETHQDQLRRVLQSRLHQHLGMIDTALVRTPGLTDEADP TLLDLYLPCLLRWTKLYANRGPKPWFDLTSYPALHALCHRAEGRASTKAAQTAEGLGP TPFTTPKFATPPEGSAT" /product="glutathione S-transferase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO1324 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 416542..417915 /locus_tag="Silicibacter_429" /function="COG: L-serine deaminase" /gene="sdaA" /transl_table=11 /note="identified by match to putative ortholog SPO1323 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="L-serine ammonia-lyase" /translation="MFLSVFDMFKVGIGPSSSHTMGPMVAAARFLDMMRASPFDFHGL RASLHGSLAFTGVGHATDRATILGLAGFLPDTYDDDKAEAALAAITETKTIVLEDLGT LRFDPKADMIFDYDHALPGHANGMVLMALDAQGDVTLRQVFYSVGGGFVLTEEELAQG KATDEGDPVPYPFKSAAEMLEMAKTSGLSIAQMKRANEVSRGCEQSFAKGTQRLWQVM NDCINRGLERDGILPGGLSVRRRAKGIYDALMAERGMNLTAPHTINDWMSVYAMAVNE ENAAGGQVVTAPTNGAAGVLPAVLRYYLDHVPGASEKHIEDFLLTAAAIGGLVKYNAS ISGAEAGCQAEVGSASAMAAAGLCAVMGGTPEQVENAAEIALEHHLGMTCDPVKGLVQ VPCIERNGLGAIKAVSAASLALRGDGQHFVPLDAVIETMRQTGADMHEKYKETSLGGL AVNVPNC" /EC_number="4.3.1.17" CDS 418623..419498 /locus_tag="Silicibacter_431" /function="COG: Predicted alpha/beta hydrolase" /translation="MSQAPNVVSFGSSQAPLVGKWHPAHGPQRAAMVVHGATGVPQRF YRHFAHWAAQQGIATLTYDYRDFGESLTGATRSSPARMADWAVADQDAAQHKLAELAP TGPLWVLGHSLGGLGIAFHRYPERVSRVITMGAGMTHYRDHPWHYLPKALAFWFLIGP VATGALGYLPGRRLGFGEDLPSGVYWQWRRWCTRRDFFARDIGKSLPQPNFNATEPPL ELCVARDDDMVPPAAVRRYAAHFAPDRTQLRLFDPANYGLGTLGHVGCLGAGCEAAWQ DLMFPDAAEARTGAA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3544 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(417969..418631) /locus_tag="Silicibacter_430" /function="COG: Transcriptional regulator" /gene="yxaF" /translation="MGHGRPLKMTRPVGLIIGVDQSVYCGYCFFMKTPDTRLTLIKTA SKLFRRKGYSGVGLSEILTAAGLPKGSLYHHFPGGKPELAAAATRWAGAWIESLVQRS FEGAETFEEGAQAACRDLAATLVQVDHIEACPVLSVLQAASDTPVLQEAVQEVYARWT AELAREARRLGRAQPDAVAQSLHIRLQGAWVMAYAQQSQAPFLHLADEIAAEAARNPA EP" /product="similar to unknown proteins" /transl_table=11 /note=", Homeodomain-like, Bacterial regulatory proteins, tetR family" /note="Hypothetical protein" CDS 419580..420554 /locus_tag="Silicibacter_432" /function="COG: Permeases of the drug/metabolite transporter (DMT) superfamily" /translation="MTQTSATPDTTDRPLLGIALMLGFCALIPLGDAVAKLLSTRIPV GQIVFVRFAAQGVILAPVALMLGISLRLPRRILPIVLLRTLLQMGGITAMFMALRFLP LADAVAIAFVMPFIMLLLGKYVLKEEVGLRRLLACVVGFAGTLLVIQPSFAAVGLNAL WPLAVAVIFAVFMMVTRTIARDTDPIAIQAVSGGIASVLMAILFVLGAQFEVAELATN LPARPEINLLLLAGLFGTIAHLLMTWSLRYAPTSTLASMQYLEIPVAVFVGWLFFAEL PNTIAACGIALTMAAGLYAVMRERQVSRAARKVDPTPISKTGLPASPE" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1322 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(420520..421191) /locus_tag="Silicibacter_433" /function="COG: Thiamine pyrophosphokinase" /translation="MTEAIVRETAPITLIGGGDVTRSDLAEALAHAPVLVAIDGGADQ ALALGAQPQAVIGDFDSVSDHARTALSQSILHLVAEQETTDFDKALRSVEAPLVLAVG VLGARLDHQLAALHVLMQPHAKTCILIGAHEVVVHLTASLELELQAGDVVSLFPLLPV SGRSDGLEWPIDGLELSPLSRIGTSNRATGSIRIEVDGPGLLAILPRHCLGALIQVMQ AGPSC" /product="thiamine pyrophosphokinase" /transl_table=11 /EC_number="2.7.6.2" /note="identified by match to putative ortholog SPO1321 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 421329..423527 /locus_tag="Silicibacter_434" /function="COG: AAA ATPase containing von Willebrand factor type A (vWA) domain" /translation="MVQNNKVLTVSYGTFSCTLEGFEDSFDTMKAIAEYFRDLAADDR YFGAEPPQPDAEMMARIAQREIARQVEARSGEGGIHLRAAAPATAPTAAPAPAPASVA PPAPAAPEEDQSTAPAVARTDDLTSDSPRTTPEAAPQMQPAVLNEAPDAPVATVPVDV SEDVAEPEAEDTVPAADSIAAKLQRIRAVVAKAPHQDEEFIEDEHADAVETDASDLAA ETTAELYEDHYDGEEDAEDADVASDEETVSDILDRLDLTGTRRKAETDDRADTAHGDT AEEPAPSQEDTEAQAEAQPAAAERPQRPRTIRVMPKRATSETEGPAEAPSDTPETAST AKATPKPAPPLRLGDDTAVSVPSGEQPSNEQAASEAAPSEPVRPRRPVRGRVIRVKRA QADESLIDATAEDVTPRQRPEATPPVSTSLSEDDEAELMAELAAVEAELMASTTDTDE VPEQDETDGEDAFDDGGPAVAPAAPAAPRATERPAREILTSRGGSPDGDVSRLMAAAD DRLSDEDAASSRETYNQLRAAVAAAQADPGDSDEQRREARTRAFRDDLASVVRPSRAA SAEPGSGRGTATSRPAPLKLVAEQRIDPAPQENTPTMAPAAASAPVRPRRVSSVLAAS EEEDAAPATRQQDGAFASYASEKGAVELHELLEAAASYMSFVEGRESFSRPQLINKVR TLDGQSDFNREDSLRFFGQLLREGKLKKASNGRFSVSSQIGFRPGNRAAG" /product="lipoprotein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1320 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(423880..424125) /locus_tag="Silicibacter_435" /translation="MAKEGLSYRARRIWALVILLVGMPLYIVLAVTILNLLDRPPIWL ELLVYVGLGVAWVLPFKFVFKGVGQKDPNALYDEHPD" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1317 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(424125..425438) /locus_tag="Silicibacter_436" /function="COG: Adenylosuccinate synthase" /gene="purA" /transl_table=11 /note="identified by match to putative ortholog SPO1318 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="adenylosuccinate synthetase" /translation="MANVVVVGAQWGDEGKGKIVDWLSERADVIARFQGGHNAGHTLV IDKKVYKLHALPSGVVRGGKLSVIGNGVVLDPWHLMKEIETVRAQGVEITPETLMIAE NTPLIMPFHGELDRAREEAASKGTKIGTTGRGIGPAYEDKVGRRAIRVADLADDATLE ARVDRALQHHDPLRKGLGVEPIDRDALVAQLKEIASEILPFAAPVWKVMNEKRKAGKR ILFEGAQGALLDIDFGTYPFVTSSNVIAGQAATGVGIGPNSIDYVLGIVKAYTTRVGE GPFPTELLGADGKPDADGERLGTRGHEFGTTTGRQRRCGWFDACLVRQTCATSGINGI SLTKLDVLDGFETLKICVGYELDGERLDYLPTAADQQARCKPIYEEMEGWSESTEGAR SWAELPANAIKYVRRVEELIQCPVALLSTSPERDDTILVTDPFAD" /EC_number="6.3.4.4" CDS complement(425708..426070) /locus_tag="Silicibacter_437" /translation="MTVPETKLNTADQMQRPEPAFEAPWHAQAFALAVHLNESGRFTW PEWVERFSAALKEAGLSRELNGGDDYFTVWLATLERLMSDQGHTDPAEVARVREDWAE AYLSTPHGAPVHLPEGRG" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1316 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(426067..426771) /locus_tag="Silicibacter_438" /gene="nthB" /translation="MSRIHDMGGRYGDGPITPEPLDAPVFPEDWHGRALAVTLACGAL GQWNIDISRHARECLSPSDYMNFSYYEKWLAALADLLVAQGVLRREDLSDVDEAANDS DAAEPAHPLAERCLSADRVAAVLAAGGPADRKSPVAAQYQPGDFVRTRLSGNRLVAGG HTRLPTYASHAQGQILRLHGTHVFPDSNAHGQGEAPEPLYAVAFAARDLWPQAEHPND EVVLDLWQSYLEPVSS" /product="nitrile hydratase beta subunit" /transl_table=11 /EC_number="4.2.1.84" /note="identified by match to putative ortholog SPO1315 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(426768..427982) /locus_tag="Silicibacter_439" /gene="nthA" /translation="MLLRFPQVYQGFVCQSALGTSGAFSPELGGSRSLPSGDVGTSAV PSCEAGARLSVIEEPPDFCAASTVSVIDVAMKAIARSHVTLLSAVAAARPVMAPPPPP PPMPRPPPSERCRRTTAMRPSARRRWMMRTTFSIGPCGCWLSIGRFIGKIAGRGKGGV FLSCPEERKTSRQQDLIVCITICNWTGARPCGQHLRMPHDHHDHPHSLLPSEPALRVK ALETILTRKGLIDPAALDAIIDTYENKVGPQNGARVVARAWSDPAFRAALLEDADKIL DEMALNGRQGEHVVVVENTPERHNMVVCTLCSCYPWPLLGIPPGWYKSDAYRARAVRE PRKVLAEFGVTLPADTSVRVWDSTAEVRYLVLPMRPEGTDGWSEEALMTLVNRDSMIG TALATPASEAPA" /product="nitrile hydratase subunit alpha" /transl_table=11 /EC_number="4.2.1.84" /note="identified by match to putative ortholog SPO1314 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 428166..429809 /locus_tag="Silicibacter_440" /function="COG: CTP synthase (UTP-ammonia lyase)" /gene="pyrG" /transl_table=11 /note="identified by match to putative ortholog SPO1312 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="CTP synthase" /translation="MARFIFITGGVVSSLGKGLASAALGALLQARGYSVRLRKLDPYL NVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFTGVPARKTDSISSGRIYTNVLEKE RRGDYLGKTIQVIPHVTNEIKDFISIGEDEVDFMLCEIGGTVGDIEGLPFFEAIRQFS QDKPRGQCIFMHLTLLPYIKASGELKTKPTQHSVKELRSIGLAPDILVCRSEGPIPVK EREKLALFCNVRADSVIAAQDLKSIYEAPLAYHREGLDQAVLDAFGIAPAPRPTLDTW EDVADRIYNPEGEVKVAIVGKYTQLEDAYKSIAEALTHGGMANRVKVRIEWVDAELFD KEDATPYLQGFHAILVPGGFGERGTEGKIKAAQYAREHKVPYLGICLGMQMAVIEAAR NVAGIEEAGSEEFDHEAGKKRFEPVVYHLKEWVQGNHKVSRSADDDKGGTMRLGAYDA ALTEGSKVAEVYGSNAIEERHRHRYEVDIKYREQLEACGLKFTGMSPDGRLPEIVEWT DHPWFIGVQFHPELKSKPFDPHPLFKDFVRAAKDTSRLV" /EC_number="6.3.4.2" CDS 429951..430382 /locus_tag="Silicibacter_441" /translation="MPEPGTITSKEPREEFPVIGTEEVPAVFFDGDKLLLCYEVAAIE GGGLAILEFDEVLDFRVDPMNVDELSDSPYPVSAWNMTEICGSEKAARWAAMDARYWS ISFTDMTLTILFDTVRLAGRSREKRLPHEALKHFIGSSLAA" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 430456..430788 /locus_tag="Silicibacter_442" /translation="MIRAFRSLIERQMAKAAQSGQLSGLEGEGKPLPDRSGEALVDPG LAAGVRIMAEAGAVPEEFPLKKQLDAARAAYPKITDPDARKAAMAELADLEMRYNMAR DARKAFFR" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3023 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 430901..431803 /locus_tag="Silicibacter_443" /function="COG: Fructose-1,6-bisphosphate aldolase" /gene="fda" /transl_table=11 /note="identified by match to putative ortholog SPO1899 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="fructose-bisphosphate aldolase, class I" /translation="MATDPAIQQQQFDRIATGKGFIAALDQSGGSTPKALALYGVMED AYSNDDEMFAEIQKMRARIITAPDFNSDKILGAILFEKTMDNAIDGTAVPVYLWEKCG VVPFLKVDKGLADEANGVQLMKPMPELDALLSRAVAAGIFGTKMRSVIKEANADGIKA VVAQQFEVGLQIARAGLVPIIEPEVDINSATKDEAEALLKGEIAAQLDALPEGTQVAL KLTIPSEAGLYDSLADHPAVVRVVALSGGYSTDDACARLSQNSKMIASFSRALTEGLN VAMSDDEYNAALGSNIDKIYNASL" /EC_number="4.1.2.13" CDS complement(431876..433333) /locus_tag="Silicibacter_444" /function="COG: Methyl-accepting chemotaxis protein" /gene="mcp" /translation="MTFDMNALLATYDLDGANQALLQKRAKMILGLLPEVLDHFYDRV GREPEMAAFFKTEAMMERAKGEQLQHWSRLFSGDFGEDYIQSARNIGRVHTRIGLPFS FFNAGYAHANAHIQALILKRHSGGLMRRATETHALLGVLSRAMALDIQLIFDAHAEAM QEEHTRGVRYITEAIEALAAQDLSHEMPSAQTGDFPSEFNGVRESLNAAFGALRQVIQ GIRSTAQQLDTGAAEVSHASQDLSQRTESQAATLEETTAAVEEITVSMRASAEATQQT RNAVDTTRRRAEEGSAVVRNAVEKMNEIADSSVQISKIISIIDDISFQTNLLALNAGV EAARAGESGRGFAVVASEVRNLAQRTADSAAEIKGLIDISNDHVESGVELVGNAGRML ESIVRHIKEASELTEQVASAAEQQSTAFGEINIGMSQLDTVTQQNAAMVEQSTAALVE MRNDASALNALVEVFRLRAGEQGGGGQEIALRAAS" /product="Probable chemoreceptor" /transl_table=11 /note="Bacterial chemotaxis sensory transducer, Methyl-accepting chemotaxis protein (MCP) signaling domain, , belas" /note="Conserved hypothetical protein" CDS complement(433752..434474) /locus_tag="Silicibacter_445" /translation="MRLKLLLSHPSVPVMLAAVALGIAILWAEGATWQWGFVVLGVGL QMLNEYGLHRYIFHLKPPRQQWAFDLLYQAHYGHHDFPTNHKLFFAPIWVAVPMLVVN FAVIFGLLWLVLPAYALSLAAAIVLVGGVATFLGYEWFHMTAHLTVTKTRVERHVTQL HNQHHFRDFSKWFHVSPGGEVIDRAMGTAIDRETLKSQQRIEFIRTLGMTPDDPRLVA ARDRFAHRYGLSAEERARACRA" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 435073..436608 /locus_tag="Silicibacter_446" /function="COG: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase" /translation="MIQPVSCICPIAAKLITSRPAQKLLPAPESTTARASEAATSLAA AITAASMCLSTAFILSARVRVTWATWSRISTDTRALSSAITAPPSGCRLNVACSLPRF GRAFQPDARARRTGSFPDRDLISPDLPLPACARAARSWAMTDSRQTPLAQSLPASVPF VGPETHERQRGAPFVARLGANENLFGVSPKAIAAMQASAAEIWKYGDAESYELRAALS ALHGIAPEHIMVGEGIDGLLGNLVRLYVGAGDAVVTSLGAYPTFNYHVAGFGGDLHTV PYKDDHEDIKALMAKAHEVGAKLVYLANPDNPMGSWHRGADIVAALDDLPEGSLLVLD EAYVECAPKGTAAPVDVTDPRVIRMRTLSKAYGMAGARVGYAMGAVEVISAFHKVRNH FGMNRCAQIGATEAIKDQAWLAHVQAEIATAREEISRIARENGLTPLPSATNFVAIDC GRDGAFAKAVLEALVARDIFVRMPFAAPQNRCIRVSCGPERERRAFAEALPLALKDAQ NGA" /product="aminotransferase, classes I and II" /transl_table=11 /note="identified by match to putative ortholog SPO3027 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 436714..436950 /locus_tag="Silicibacter_447" /translation="MKRHNLHHDNTEFLSATLSFLAVNLLWIFFALWLLFGMVPVLLL AVTMNHMINRLEVRMIRAEQRAGKGQGRTLDRRV" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(437184..438398) /locus_tag="Silicibacter_448" /function="COG: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase" /translation="MRDSVKLSSGRSYLAIPGPSVMPDQVLQAMHRASPNIYAGELVE MTGTLPADLRRVARTQHHVAIYIANGHGAWEAALSNTLQEGDKVLVPASGRFAYGWSE MAEALGINVEVMDFGLQAPFDLARVAERLAADKAYEIKAVLGVHTDTSTSIRNDINGL RAAMDEVGHPALLMADCIASLGCDRFEMDAWGVDVMVTGCQKGLMVPAGMSFVFFNDK AAEARARLPRISRYWDWVPRANPEYFYQFFGGTAPTHHLYGLRAALDLIHAEGIEQIW TRHETLARAIWAACDRWSEGGALAMNVADPALRSHAVTALRLPSPRATDLRVWLEENL GLTLGIGLGMAPPDSAEWHGFFRLGHMGHVNGHMIMGLLGGIETGLRALDIPHGAGAL ESAAKVLAGAPS" /product="serine--glyoxylate transaminase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3029 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 438631..440490 /locus_tag="Silicibacter_449" /function="COG: ABC-type multidrug transport system, ATPase and permease components" /translation="MSTQYMSSRKLLRWLWRGYLRHHVGLLAIAVFFMLLEGASVGGL SYMMQPMFDLVFVDGSENALIWVSVAFFAIFVLRGFSSVTQRVILATINQRSEAHMRT DMLERLIHQDASFHQHHPPGFLIQRVQTDVAAINQVWQAIITGSGRDVAQLVAVLTVA ISVDWRWTLIMLIGVPLLVLPLSIVQRYVRKKASLARDLGAVQATRLDEVFHGIVPIK LNRLEDYQSGRYRSATAAFVRAQIKAALGASSTTGMVDLMAGFGVMCVILFGGREIID GDKTVGEFMSFFTAIGLAFDPMRRLAAIMGIWQGAAAAMERIKELMDEPITLVSPEHP KPAPKGLPEIRLDNVNLYYGEAHILRDLSLVAEAGKTTALVGASGAGKSTIFNILTRL VDPQTGSVTLDGTEVRDLDLGDLRDLFSVVTQDALLFDETLRENILLGRTDVSEERLA EVLDAAHVSDFLHKLPEGLETRVGPRGSALSGGQRQRVVIARALLRDTPLLLLDEATS ALDAQSEKVVQKALEKLSGGRTTIVIAHRLSTIRSADKIVVMERGRVMDQGRHEELLE RGGIYADLYRLQFQDGKTVIDTDGMNAQIAQNDNRNAREETGLLRRFARRLFG" /product="efflux ABC transporter, transmembrane ATP-binding protein" /transl_table=11 /note="identified by match to putative ortholog SPO3030 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 440598..441344 /locus_tag="Silicibacter_450" /function="COG: Predicted aminomethyltransferase related to GcvT" /translation="MADRRILRLEGPDTRSFLQGLVSNDVNKVQDGLVYAAILTPQGK YLADFFLAADGDAVLLDVAEALADDLVKRLKMYKLRANVTLEETDLKLRRGTGDAPEG ALPDPRHPALGWRQYGKETFDDGSDWDVIRVTHVIPETGIELTPDSYLLEVGFERLNG VDFRKGCYVGQEVTARMKHKTELRKGLTQVEIDGTVPVGAQITAGGKAVGQVFTQSGG KAIAYLRFDRAKGALEAEGTALRWPEAPAE" /product="aminomethyl transferase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO1246 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 441457..442038 /locus_tag="Silicibacter_451" /translation="MRRLFSKAILTTLLVGAGLVGATSVASAQEYWEYGDWRVFITDV DTGEDLRRTCLAMTGGDGMPSIRLEITDGDAGPPHHFPTPTYFSSVPRGHRPLIGNAQ GVAFVFDRQGVFFGVAEGGYDDDGIAWSAASPRWQDAKNMLLWMKAGSLMEVRALDAY RASTEAYVASMRGFTAAYGKMMDSCGHSLEIPQ" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 442075..442200 /locus_tag="Silicibacter_452" /translation="MNMPSLPLGRAPLRGAIPRSLRTKKPRAIYGAGLCQVWYQV" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(442212..442775) /locus_tag="Silicibacter_453" /function="COG: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A)" /gene="efp" /translation="MPKINGNEIRPGNVLEHNGGLWAAVKVDHVKPGKGGAFAQVEMK NLRNGSKLNERFRSADKVERVRLEQKDQQFLYETDGMLVFMDTETYEQIELPADLLGD RRPFLQDGMTIVVEFYESEALNATVPQKVTCKIVETEPVVKGQTAANSFKPAILDNGV KVMVPPFVGQDEMIIVNTETMEYSERA" /product="translation elongation factor P" /transl_table=11 /note="identified by match to putative ortholog SPO1244 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 443002..443319 /locus_tag="Silicibacter_454" /translation="MRDFVDGTAYNNEQGNRARKLFAAVVLAALDDAIADDKKYGNGP EQIARWARSRDGREVLTCAGIDPNERVVEGLMEFVGRGVRTSVALSREESERRNAAQA EAA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1243 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 443521..444987 /locus_tag="Silicibacter_455" /function="COG: Cobyric acid synthase" /gene="cobQ" /translation="MTPKALMIQGTGSNVGKSMLVAGLARALRKRGLSVAPFKPQNMS NNAAVTSDGGEIGRAQALQARAAGLAPHTDMNPVLLKPETDTGAQVIVQGKRRGTRAA GSFMRDKAGLLEATLESFHRLAAQHDIVLIEGAGSPAETNLRKGDIANMGFAEAAGVP VLLVGDIHRGGVIAQIVGTHTVLEPSDRARIKAFAVNRFRGDLSLFDGGRDDIARWTG WPSLGVVPWFWDAWKLPAEDMMDIASHKGGACKVVVPQLERMANFDDLDPLAAEPAVT VEIVPPGRALPGDADLVLIPGSKSTIGDLAYLRTQGWDIDILAHHRRGGHVLGLCGGY QMLGQSIDDPEGVDGHPGKVAGLGLLDVHTVMAGDKRVTLSAARTLEGDLPVSGYEIH MGRTTGPDCARAWLALEGRAEGATSADGRVRGSYLHGLFTSDAFRAQFLSDLGHQSDL DYDAGVEATLDELAAHLEQYMDVEGLLELAEPIPVPES" /product="cobyric acid synthase CobQ" /transl_table=11 /note="identified by match to putative ortholog SPO1242 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(445325..446632) /locus_tag="Silicibacter_456" /function="COG: AAA ATPase containing von Willebrand factor type A (vWA) domain" /translation="MSDPVTHSEIEDVLSSIRRLVRETGREETPSAQPKPASRLVLTP ALRVHEPEATRAPQASQEGRSDTGSNGAQDNAATRAAASDAVSVLREKSASAEKSRVL HRAPAYDTAPAQDTASEGSPHDRAAAPNEARQSHVATPEPTPVAAPEEPIAEAPFVEV DEAGLKDVLDEAPNAPIPLDAVRRAEPQYAAPQETLDEAQPEHMGEVAPQVSPASPAD TAADAPIETPVEAPADAPWRDPGARLFDSLETGTPSKPTVAENADAAPAPAQQDAAET TATPTVAGDEAVTSPGQSSRVAAVVRRIAELETAGRVEAAGTDEGRNRAPEINEDDIE AVPHSGPTVETIQWEDHQDTAPEPASFAESAQDMTQDSLTEATMNRLAASEEFMDEEG LRELVTSIVREELQGALGERITRNVRKLVRREIQRALSTQELL" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1241 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(446709..448130) /locus_tag="Silicibacter_457" /function="COG: Outer membrane protein" /translation="MQKLLKSKRIKAFATIGVLATAVLSAPQARADNVTDAMIGAYTS SGLLEQNRALLRAADEGVAATVARLRPVITATLAIARDYNRTGFGTGGARSSHSTGAS LRLGMEWLLFDNGATQLDQAAAQETVLATRQTLLDVEQQVLFAAVQAYVNVLTQQDIV ALRQNNLRLLQEELRAANDRFEVGEVTRTDVALAESRVAEARANLTDARGALLTARAT YEEVVGRAPGAVASYPPLPRRAASLSDAQALALRSHPSLRAQQHSVRAAQLTADSSLR DMGPNVKFTASATHSEVHSSDSNADNFDLGLSLNQTLYAGGALAAARRADLARLDAER GALISIQRSISSSAASAYTAFETAAASLVSSNQRVRAAQVAFDGIREEATLGSRTTLD VLQAEQELLDAQTARLSARANQALAAYQLLQAQGLLTAENLNLAVERYDPELYHNQVR SAPAFVTKRGQDLDRVLKALRKN" /product="type I secretion outer membrane protein, TolC family" /transl_table=11 /note="identified by match to putative ortholog SPO1240 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(448275..448928) /locus_tag="Silicibacter_458" /function="COG: Protein-L-isoaspartate carboxylmethyltransferase" /gene="pcm-1" /transl_table=11 /note="identified by match to putative ortholog SPO1239 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="protein-L-isoaspartate O-methyltransferase" /translation="MTDFSDRRRMMVDTQIRPADVTKYPIIEALLAISREKFVPDSQA EVAYADQSVPLSTGRVVPEPRTLAKMLDALDVRQDELVLDVACGFGYSTAVVARLAQM VIGVEEDESLASEAQEILSASNADNAIVHQGDLAEGAAEHGPYDVIMIEGGVEEVPEA LLAQLKDGGRIAALFMDGALGEVKIGYKSNGRVSWRFEFNAGAPVLPGFAKPRVFSL" /EC_number="2.1.1.77" CDS 448942..449160 /locus_tag="Silicibacter_459" /translation="MFRHSSGFCHIATRAATAPFDNSKGLANLLPALFCLHGLIAREV PCATAGAFHSGGKLAAHITTALHGRPSS" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 449166..449288 /locus_tag="Silicibacter_460" /translation="MLRRPRLALNWAAPRKRTLAPDLPPTANSRIWIAKRDHSA" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 449745..450251 /locus_tag="Silicibacter_462" /translation="MNVEIHGLSSQNKKTDTTQSAQTQGSPAKSGTRSKRAAPSRTRG ETRGLVGLRIPKLTQATLQKTRNRRAIKKRQFYAACAPWSREVAPLWALRFLPTSETV MLSTRSLLGPSEILPRDGEPSMIRPLMMALMIFGLAACETTKGAGRDLQKAGQAISNT AQNVQNAI" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(449454..449762) /locus_tag="Silicibacter_461" /function="COG: DnaK suppressor protein" /translation="MDFNVQRKCLETRLNALSSGMLAGQGLSALARDGVTIDDEVNLL TRQSKMTSLMGREVKAILTALDRMEAGEYGYCRICGADISSEHLSAHPESPFCEFCSA " /product="dnaK suppressor protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO2248 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(450319..451236) /locus_tag="Silicibacter_463" /function="COG: FOG: GAF domain" /gene="htlD" /transl_table=11 /note=", GAF, GAF domain, sensory_box: PAS domain S-box" /note="Conserved hypothetical protein" /product="Sensor protein fixL (EC 2.7.3.-)." /translation="MNAGDIASTEQSRAAELEAAGGLRVPQLFSDLPEAVIVADHARR ISWVNPAFERLFGYALSDVRGRTTEFLYASHESYLEKGRAHFSAVPSASDHSYEVTYR RRNTETFLSQTTGGPIRGADGAPVGYLAVIKDISQTRLFETLLRVLFDITTNQALSRD EKVHEILKLGCERFQTMSAIISCVQGQTYTVSYCYSHEAPVEPGTRFELGETYCAQTL TGEGPVAYHRASQSGIASHPCYDMFLLETYIGVPLIVDGHVFGTLNFTSPEARAPFEP MDLELIKLFAAWVSQQLSIDAALSAAKLR" /EC_number="2.7.3.-" CDS 451743..453521 /locus_tag="Silicibacter_464" /function="COG: Predicted periplasmic ligand-binding sensor domain" /gene="shkA" /transl_table=11 /note=", [EC:2.7.3.-], Histidine kinase, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /note="High confidence in function and specificity" /product="hypothetical protein" /translation="MAHTAPHHKKISTLHMLVIGLSLAMTIGAWLYSKHQVDKQIEAR FIASRDRTVDLIVDRMSRYEDALWSGVAHARSLSGELNARDWHTFSETLHIEEKYPGV NGIGFIHNVERTDLPAYHEARSSEGRPIQIYPEHDLEYLLPITYIEPEAANAAAIGLD VAHETNRRTGLLASRDSGSARITGPIVLVQDSGNTPGFLFYTPLYAGQMPTTVAERRE RFLGVVYAPFVVRKLVEGLLSKDLRDVRFSLSDGEAVIYDEHGPDEPLYDVDPMFTDT VVVDMYGRKWTVNLRTNLAFRAQNSSAQPSLILAGGLVIEILVISLLVMLSRSTKQAH SLARDLTAELRAKTKHLEKANAEIEQFVYVASHDLKTPARGIGFLVDVIEEELEDVLK SAQNRGELQMQLDMIRDRVARMNDLTKGIMEFSRVGHYGSEGEPRLPVSNLIEDCVAD FEVDPKQVHLASDVSEIACDSHNFRRVLENLIGNAFKYHPHPRAAKVEVAIKDRGDRL TVSVKDDGNGIAPEFHDKIFDVFQTLRKGTEPESTGIGLAIVKKAIQRHGFDITVTSS EGHGAEFSFCWPKDRSQSSMDLENVA" /EC_number="2.7.3.-" CDS 453523..453945 /locus_tag="Silicibacter_465" /function="COG: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /translation="MTRQMNILLVEDDDLDAMMIKRAMAQVAPDAHLIRATDGVEALE IVQSNRVEDPYFILLDVNMPRMNGHEFLKELRASSEHSDTMVFMFTTSESARDIARAY QERANGYIVKPHGKAAMNSILDTLQRYWTTCEPPRTLA" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note=", CheY-like, Response regulator receiver domain" /note="Hypothetical protein" CDS complement(454401..456317) /locus_tag="Silicibacter_466" /function="COG: Predicted metal-dependent hydrolase with the TIM-barrel fold" /translation="MRTLNRRNLLKGSVAAACLTVPAVRAVGQTNSLSEIGKLFAPVP RAKIFTARDIVTLDPSQPSAEAIAVVGTRILAVGALSEVQEMLGDQPFDVDDSFADKV IVPGFISQHDHPVLAALSMSSEILSIEEWALPTGTVPAVKDKADFMKRLTAAVEARTT PGEPVVTWGYHPAFYGPLTRADLDGISTERPILVWGRSCHEMILNSAALTAGGVTQAA VEAFDAASQKQANLAEGHFWEQGLFAVLPHIASLVATPEQLRAGLELSRDFMHSKGIT FGNEPGGILAKPVQDGVNAVFSSPDMPFRWSFMVDAKSMVASYADDGEVIARSEALQS WYYGMTSLAPRQAKLFSDGAIYSQLMQVRAPYLDDHHGEWMMEKELFERAFRVYWDAG YQLHIHVNGDAGLDRVLETLETNMRRNPRFDHRTVIVHFAVSAFDQVERIKALGAIVS GNPYYVTALADQYSEVGLGAERADSMVRLGDLSRAGVRWSLHSDMPMAPADPLFLMWC AVNRVTTSGRVAAPEQAVSAEDALRGVTIEAAYSLQMEEEIGSLVRGKRANMTILAEN PLEVDPMAIREIEVWGTVMEGRVLPVRSSDRAAATQQDASAGPREAVSPNGAPAFDKA ALEHALKVTHAHHL" /product="amidohydrolase domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO0955 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 456564..456995 /locus_tag="Silicibacter_467" /translation="MATAPPRPRAGPREQSATHTDHRGGGWRIISKGIPINVLRKGKF MQNAILILAAATVVICSPVLALVAQGRPTAGDVALVIAPPWGKSAGDIVTGAGLQDVT PERAPIGALVLLETPDSIDRLYREGAWLITDGKKVLELCKS" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 456983..458575 /locus_tag="Silicibacter_468" /function="COG: Methyl-accepting chemotaxis protein" /gene="mcp" /translation="MQKLREPHADTSAIDSPARPIAKAANKRRIQRVTSWLLVPLPAA AAYFVNGLPLWWAFAALSLVLGAMAWVSRKLPESTRDYLLSFCFIAHCILLTASLSGH AWQLDTHMMFFAALAIVSTLSSPRALIFATVLIALHHISFSVLMPSLVYPGGGIAENL QRTVMHAVIVLLEAGVLLLSMLRSLAADTELKTQQSAAEHQAQAAERAEALAMQSHKN AERVVSIVGDHLRELAAGRLDCKIDTSFPQEYAQLQESFNSTVDTLKGTIEQVKDATY RLSKGATDIDQASENLSNRTESQAATLEQSVAALEELTTSVKSSAEGALSVQRTMDDA RSEAVSSGGVVKDAVSAMSAIEDSSSQIARNISVIDDIAFQTNLLALNAGVEAARAGE AGKGFAVVAAEVQALAQRSADAATEIKSLISQSSQHVDHGVDLVGQAGEAIEKIVERV EQISELVSGIATSAAEQSSGLGEINTGMSQLDQVTQQNAAMVEQVSAASHLLHSDSKR LAQLMAHFETGAADQTQSAAAA" /product="Methyl-accepting chemotaxis serine transducer." /transl_table=11 /note="Bacterial chemotaxis sensory transducer, Methyl-accepting chemotaxis protein (MCP) signaling domain, , belas" /note="Conserved hypothetical protein" CDS 458899..459876 /locus_tag="Silicibacter_469" /function="COG: 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases" /translation="MKIGFIGLGNVGGKLAGSLLRNGFDLTVYDLNPDLVAEYVEKGA QPGTGPLAIMRACDAVITCLPSPAACATVVEEMLPAVDSSKIWMEMSTTDAAEVKRLA ALVSERGGSAMECPVSGGCHRADTGNISIFAGCDRATFERMLPTLTTLGRRVLHTGDI GSASILKVMTNYLATANLLTCCEALVTMKAAGIDLNTTYEAMKISSGTSFVHETESQV ILNGSRDISFTMDLVKKDISLFQTIADAHGVPLEISPLLVEIFTDGIARFGERELSPN IIRRLEEATGLSITAPGFPAEMVDDEPEEPGYEVVPTGLSAPLAKAPAG" /product="3-hydroxyisobutyrate dehydrogenase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2859 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 460100..460981 /locus_tag="Silicibacter_470" /function="COG: Transcriptional regulator" /translation="MRRLPHVTWLRSFEAAARHSSFSAAAEELHLTPAAVSQQIRQLE HHLGFQLFKRLPKGVELTDIGQAYAIPVRKSFVQMQEATDGLFRVQSKSVLRVRCSIS FAALILAPLLRDFAEIHPDIDVELSTAVWSDRMEGAGVDLDIRYGAACWPEQNVHPLP VEEATLVCHPDYAAQLGSALDPAWLGAADIVQIVGSETDWDRYLRLCGIDTPRPRHWM KADSSLIALQILSAGRGCALISRSFARQALSEGRLVAPFDLSLPMQESFVLVERDDLR ENPGLRKLVDWLLTQRL" /product="transcriptional regulator, LysR family" /transl_table=11 /note="identified by match to putative ortholog SPOA0284 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(460978..461868) /locus_tag="Silicibacter_471" /function="COG: Transcriptional regulator" /translation="MDHLPPLRLLVTFEAISRHGSMRDAAQRLNVTQPAVSQALKALE DHVGVALFDRSVRPARLTDAGEMLSRAVREGLGRIAATLEDIRALHAIGERQVTVSCT LGMATYWLMPKLPMFYADYPELTVNVQAPATDLPVLSPGIDVALRYGRGGWREGRTEK LFAEVICPVGAPALVERLLAEGATLAEAPLIHVRNPHNDHWAGWEDYLQARGIQRPRG GGQIFNNYVQAAQAIYDGRGLMLGWRSITGQAERDGALRAWPDGALDLGTSYFVTMPT TPSQDTLLFVDWVRKAAATV" /product="HTH-type transcriptional activator ampR." /transl_table=11 /note=", LysR, substrate-binding, LysR substrate binding domain" /note="Conserved hypothetical protein" CDS 461980..463128 /locus_tag="Silicibacter_472" /function="COG: Probable taurine catabolism dioxygenase" /translation="MNDLSSPPTVATIAGLGDKGLDITLADGATHYFNYYWLRDNCPS SFSAMTRERSFDIFHLETAPRARTAEIDGDALVIDWQDEDHITRMPLSWLNAYAGGQR RPDPADLSRVAWFGDHYPSVPRFSQPDLVSDDATRAKWIEAMLVHGFTIVTDMPDSDA ALTQTAELMGFVRPTFFGTYFDVKTHINPTNTAYTAGALELHTDTPAEEFAPGIQFLH CRINTVDGGESLYADGVAVANDFRKRDPEGFRLLSEVPIPFYCEHDTYDARSRQYVIE LDQHGEVEGLTISQHMADIFDLDQKLLDDYYPAFCRFGRMLQEEKYMMRFLMKGGECM VFDNHRIVHGRAAYTASSGDRYLRGCYVDRSEMRSTYRALVSEGRFKA" /product="butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)" /transl_table=11 /EC_number="1.14.11.1" /note=", [EC:1.14.11.1] , Trimethyllysine dioxygenase, mitochondrial precursor (EC 1.14.11.8) (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha- ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD)., Gamma-butyrobetaine hydroxylase, Gamma-butyrobetaine hydroxylase, carnitine_bodg: gamma-butyrobetaine hydroxylase" /note="High confidence in function and specificity" CDS 463125..463853 /locus_tag="Silicibacter_473" /function="COG: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases" /translation="MTLTRALPDAEAQLRTDLADAFRICHMLGWSESVGNHFSAAVSA DGQSFLLNAKWQHFDTIAPEDLLLLDSRTAETPPDVDASAWCVHGTLHRRLPDARVVL HAHSPYATALACLEDPTMVPIDNNTARFYGRTAYDMSFGGIADATEEGERLAEALGDK SVLVMGNHGVSIVGDTVAEAFEDLYFFEKAAQTLILARSTGARLAVLTDAVAQNTADG WRAYQGMAAKHFAYLRSRLPPLPG" /product="class II aldolase/adducin N-terminal domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO3749 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(464019..464516) /locus_tag="Silicibacter_474" /function="COG: Predicted transcriptional regulators" /translation="MSNSDVPPPASQTPVVDPSVRARAPVRMDRCGLAQAADILGDRW TLLILREAFYGVVRFADMQEDIGVPRSILSNRLAKLVEAGLLCRFEYRENGARARHGY RLTERGRDLALTFLAMKQWWDTEQSTTPSVHFAPKGKTGAVRVALLDEDGQEVDPETL RVVMG" /product="transcriptional regulator, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3645 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 464576..465421 /locus_tag="Silicibacter_475" /function="COG: Dienelactone hydrolase and related enzymes" /translation="MTTRFIPATPAARPIDQDDPLEDFERREVALLGLTKTVYVAGAG PAVIVMHELPGISPQVARFARWVREAGFTVYMPSLFGRDGAVAQADEGAEVFKRVCIS REFRVMAGMGTSPVVAWLRALASEAHEACGGIGVGAVGMCLTGNFALSMMIEPAMQAP VLCQPSLPLDDPGAIAMSDEEAAAVRARMDQDDLTAQLYRFEGDSFCRAERLAAYFDR FGDRLTEKTLPDSAANPSPAPFFNAHVPTPHSVVTQHLIDAAGTETVKAVEEIIAFLR SRLHP" /product="Putative carboxymethylenebutenolidase" /transl_table=11 /EC_number="3.1.1.45" /note=", Putative carboxymethylenebutenolidase (EC 3.1.1.45) (Dienelactone hydrolase) (DLH)." /note="High confidence in function and specificity" CDS complement(465540..466604) /locus_tag="Silicibacter_476" /function="COG: Signal transduction histidine kinase" /gene="ark1" /transl_table=11 /note=", [EC:2.7.3.-], Aerobic respiration control sensor protein arcB (EC 2.7.3.-)., Histidine kinase, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase" /note="High confidence in function and specificity" /product="Aerobic respiration control sensor protein arcB" /translation="MSLEQKRLLDQVEQAVFVLEPDAEGIPRYTAFNRYALGHIQRRE AEVLGLTIRDLFPGRYGETIYGHHLRVLREGRPFTYQAHLPLHGAEHRIEVTLRPCLD DFGRVTHIVGTTKDISGLGHLQNLQLGAEMFHAEIEDFVSLAAHDLRTPMRHVRTIAE MLREDFEDMGDGKLELIDMLEQIGTRATQLISDILAHAQATTTQSDVRAFSFRDLVNE VLALLDPMGRCVCNISGDQVVGDRAATLIVLRNLIDNALKYGRRADGSPLHVDISLSA EPDDFYAVEVKDNGPGLRDPAALLLNTGTLRTDGGFGLLGVHRLVRARGGTIDARNNE DQPGAVIRFTLPGHLPSAAA" /EC_number="2.7.3.-" CDS complement(467512..467709) /locus_tag="Silicibacter_477" /translation="MRGDMLLYLWLLVASENFPYFPAILGVRFVGAVFVFVLFWFGVG FWAVIPKSNPHESDSFSQNPA" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 468026..468619 /locus_tag="Silicibacter_478" /function="COG: Uncharacterized protein conserved in bacteria" /translation="MAADQLAPFGFRPRVQEEPGKTRDARKGGTLGRRFRGESHHKVD SKGRVSIPASFRRVLEASDPNWQPGDAPELVIVYGDHRRQYLECYTMEAIEEVDAKIA ALPRGSKGRKILERIFNGQSLPTTVDETGRLVLPAKLRQKIDLDKEAFFIASGDTFQI WKPETYEEVEMAEAEKLMDELPDDFDPLEFLDGAGGA" /product="Protein mraZ." /transl_table=11 /note=", Protein of unknown function UPF0040, TIGR00242: mraZ protein" /note="Conserved hypothetical protein" CDS 468623..469612 /locus_tag="Silicibacter_479" /function="COG: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis" /gene="mraW" /transl_table=11 /note="identified by match to putative ortholog SPO1179 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="S-adenosyl-methyltransferase MraW" /translation="MTDRTAAPSGPHIPVLLKPLLAAVAPVTGRWLDGTFGAGGYTKG LLAAGADQVIGVDRDPLAFEMAQPWAAEYGDRLVLQQGVFSRMDEYAQELDGVVLDLG VSSMQLDLAERGFSFMKEGPLDMRMSQDGPSAADLVAELSEVQLADVLYSFGEERASR RIAKAIVKERAQEPITTTLRLAEIIEGCLPRPKPGQSHPATRSFQALRIAVNGEYEEL MGGLLAAERALKPGGLLAVVTFHSVEDRMVKRFFQHRANKTGNANRYAPAMEEQPSQF ELVTRKAVGPDKDELAQNPRSRSALLRVGRRTDAAPVEITAKELSMPQLKETR" /EC_number="2.1.1.-" CDS 469612..469959 /locus_tag="Silicibacter_480" /function="COG: Predicted secreted (periplasmic) protein" /translation="MRTLAYMMTILAVFGLAFWAYRENYATQQVLKETRVLRSDIADA QVRLSVLRAEWAYLNRPDRLRDLAELNFERLGLLPLRPEQFGRVDEVSFPPSGLVIEE GVEVSSYGQEADQ" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1180 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 469956..471737 /locus_tag="Silicibacter_481" /function="COG: Cell division protein FtsI/penicillin-binding protein 2" /translation="MIRTPLRPLARILPARARGENPDLIERENLAQRHSEMEARARTR AEGRLLVLAAFFVCAYVAIGGRMAMMATSEPAEPVSVSGSAIANQRADIVDREGRILA TNFETFSLYAQPPQMVEPLVAAEKLVSIFPDLDHERLVKDFTGSRKFLWIKKKISPEQ MQAVHDIGDPGLMFGPREMRLYPNGKLAAHVLGGASFGKEGVNAAEVIGVAGVEKQFD DYLRDPANGGKPLELSLDLSVQHATEEVLYGGMKLMNAKGATSILMDVHTGEVISVAS LPDFDPNERPRPPTSGFDPSESPLFNRAVQGVYELGSTFKIFAAAQAIELGLVNPETV IDTRGPLRWGKFSIRDFRNYGNEMTVSRIIEKSSNIGTARLAQQIGAERQRAFLGELG MLEPTPFEIVEASGGQPLLPRNWSELSTMTISYGHGISTTPMHLAAGYAAIANGGRLV KPTILKQTGPRLGERVLSKEVAEASLEMLRRVVSSGSASMAEVEGYSVGGKTGTADKP KPRGGYYEDKVIATFAAVFPTDAPKYVLIVTLDEPEIIAYGEDRRTAGWTAAPVAAEM IARLAPLLGLRPQIEPARISGVTLTSN" /product="penicillin-binding protein" /transl_table=11 /note="identified by match to putative ortholog SPO1181 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 471752..473236 /locus_tag="Silicibacter_482" /function="COG: UDP-N-acetylmuramyl tripeptide synthase" /gene="murE" /transl_table=11 /note="identified by match to putative ortholog SPO1182 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase" /translation="MTQRPALKLSQLGLTARAGLDPQITGLAVDSREVGEGFVFAALP GTRVHGATFVEQVLDQGAVAILTDAKGAEIAGEAIAAAGAALVVAEDPRQALSGAAAL WFGAQPPVMAAVTGTNGKTSVSTFLRMIWTELGHKAVNLGTTGIEGAWSHPLAHTTPE PITLHRALAAAAEAGVTHAAMEASSHGLDQRRLDGVQLSAAGFTNFTQDHLDYHETFE AYFAAKAGLFRRVLSEDGVAVINMTDPKGAEMRAIAAARGQEIITVGRGLGDIALMGM RVDATGQDIRFTWHDRPFAKRLNLIGGFQAENVLVAAGLAIASGEDPEQVFDTLPHLS TVRGRMQLAATRDNGATVFVDYAHTPDAVATAIKALRPHVLGRLVAIVGAGGDRDATK RPLMGAAAQDNADAVIVTDDNPRSEDPAAIRAAVMGGAPDALNVGDRAEAILRGVDML EAGDALLICGKGHESGQTIGTDVLPFDDVEQASMAVAALDGRMV" /EC_number="6.3.2.13" CDS 473233..474624 /locus_tag="Silicibacter_483" /function="COG: UDP-N-acetylmuramyl pentapeptide synthase" /gene="murF" /transl_table=11 /note="identified by match to putative ortholog SPO1183 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase" /translation="MSLWTAQEAAAATGGRATSDWQVNGISIDTRTIEPGDLFVALKA ARDGHDFVAQALEKGAGAALVSHIPEGVAEDAPLLLVEDVQTALEALGRAGRARTKAR VVAVTGSVGKTSTKEMLAAMLTPQGRTHAAVASYNNHWGVPLTLARMPADTEYAVIEI GMNHPGEIAPLSRQARPHVALVTTVAAVHLEAFEDVAGIAREKAAIIEGLEPGGIAVL NADLEETPVLRDVAQDAGVATRWFGQTSDDYCLQEAQLSGDVTRARIVQAEREFSAEI QSLGVHFAMNATGALAAIEALGADLELALAGLQGWSPVKGRGARFTVGLPSGPVTVLD DAYNANPTSIGAALTVLAATPTEGRRIAYLADMKELGPEEARLHAGLADHPALAKIDA VHCIGPLMKHLYAALPENKRGTWVETSAEAASALPAQIQGGDVVLAKGSLSMAVARVV DAIREIGQGNAPS" /EC_number="6.3.2.10" CDS 474666..475748 /locus_tag="Silicibacter_484" /function="COG: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase" /gene="mraY" /transl_table=11 /note="identified by match to putative ortholog SPO1184 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" /product="phospho-N-acetylmuramoyl-pentapeptide-transferas e" /translation="MLYWLTALSDGGDFFNLFRYITFRAGGAFLTALIFGFVFGKPLI NVLRKRQGKGQPIRDDGPEAHLAKVGTPTMGGLLIVGALLFSTLMWARWDNPFVWLVL FVTMSFGLIGFADDYAKVSKQNTSGVSGKVRLLLGFVIAIVAALWASWNHPAELQNQL AMPVFKDVLLNLGYLYVPFCICVIVGAANAVNLTDGLDGLAIMPVMIAAGTLGIIAYA VGRVDFSEYLDVHYVPGTGEILIFTSALFGGGLGFLWYNAPPAAVFMGDTGSLALGGA LGAIAISTKHELVLAIVGGLFVVEALSVIIQVLYFKRTGRRVFLMAPIHHHYEKKGWA EPTIVIRFWIISLILAMIGLATLKVR" /EC_number="2.7.8.13" CDS complement(476061..477134) /locus_tag="Silicibacter_485" /translation="MVFSMVWAWWRQQAKGTPTIGSVNARRYKGIKERGMQALLNWSS YDQISQMESSLTVQLLQMSVFDFHSSIDRGEMNDARVARLRDRDIEALQQIPDLAQVF ILHHDGYVREAALKQLDGSVGAPGCIYALFWRTNDWVHEVREAAHEALARVLPQTSAE VIVPAIRAALPRIASWGRWSQAGPGRITTLAQRDDVASALVDDVIQSEGAALTVVFRE LCKTPKIDPQLERIFRKAHQPHIRGMALQILLSGKARWPLPQRRKVWIDKPSGRSRME LQFQSRDITVDADVLGLLQRAVTDHASIVRKHALDGMIALRHDREMAHTLDTLVAGLE DDPNIGVRSRVAFFQCKRREENP" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(477154..478239) /locus_tag="Silicibacter_486" /function="COG: ATPases involved in chromosome partitioning" /translation="MPVTQEEIRAALDRLELPGGGTLVSRDMLRALSIEGSTVRFVIE AASPEEASKMEMLRRAAEASVKALPGVETVAVVLTAHGPAAPTKSAQKPAPSLKLGGH PKPQAAPMKPSGVKRILAVGSGKGGVGKSTVSANLAVALARQGRKVGLLDADIYGPSQ PRMMGVSGRPASPDGTTIEPLHAHGVTVMSIGLMVEERKAVVWRGPMLMGALQQMLGQ VNWGELDVLIVDLPPGTGDVQLTLCTKAELSGAIVVSTPQDVALLDARKALDMFDTLK TPVLGLIENMSFFTCPDCGGTHHIFGNGGVAAEAKDLGLPLLGALPIDLETRLAGDSG TPIAAGEGVMAEAYARIAKGLVEGGMA" /product="Mrp protein homolog." /transl_table=11 /note=", Protein of unknown function DUF59" /note="Conserved hypothetical protein" CDS 478447..478779 /locus_tag="Silicibacter_487" /translation="MTNPRIVRPQHFIILRINRDRQSFGHTVQTTEKRDETMAILNTI HAPKSLTSGGVAAMIEGLRARFAQYRVYRATLNELRELSNRELADLGLSRSMLKGIAL EAAYGELK" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1177 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 479422..479913 /locus_tag="Silicibacter_488" /translation="MPQSSPQSKVISCPLPKTSTLWQRVQPQDFIDGYAVESALSPRE AMEIGLSMPGWASALLALRNRLVAPLGLKTEASDTGEGAIFPVTHEDESEIILGTDDS HLDFRICIRREAGRIHMATWVHRNNLLGRAYLVAVMPFHILIVRDSMRRIARASAPLA PVS" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1157 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 480056..480817 /locus_tag="Silicibacter_489" /function="COG: Imidazoleglycerol-phosphate synthase" /gene="hisF" /translation="MLKTRLIPCLDVADGRVVKGVNFVGLRDAGDPVEAARAYDAAGA DEICFLDIHATHENRGTMFDMVRRTAEQCFVPLTVGGGVRTKDDVRALLLAGADKVSF NSAAVANPDVIAEAADQFGSQCIVCAIDAKSVAPGKWEIFTHGGRRETGIDAVEFARL VTAKGAGEILLTSMDRDGTKSGFNLEMTRAISDAVNVPVIASGGVGTLDHLVDGVTKG GASAVLAASIFHFGEYTVQEAKEHMIANGIPMRLQ" /product="imidazoleglycerol phosphate synthase, cyclase subunit" /transl_table=11 /note="identified by match to putative ortholog SPO1156 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 480814..481131 /locus_tag="Silicibacter_490" /function="COG: Phosphoribosyl-ATP pyrophosphohydrolase" /translation="MTLLHDLEQTILSRKGTDPDTSWTAKLLSKGPEKCAEKFGEEAI EAIIEAVKDDKAKLASEGADVLYHFLVMLAARDVALDDVLTVLAERQGLSGLAEKAAR PKG" /product="phosphoribosyl-ATP pyrophosphohydrolase" /transl_table=11 /EC_number="3.6.1.31" /note="identified by match to putative ortholog SPO1155 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(481188..482351) /locus_tag="Silicibacter_491" /function="COG: Uncharacterized protein conserved in bacteria" /translation="MARLKIDNRTARSLWLQLHGLAQTPTGPLDVLGLIEQLGFVQLD TIQVVSRAHHHILWSRNQNYREPMLDPLLRTHRQVFEHFTHDASVLPMAFLPMWQRQF ARKKHQVSRSNWFGKHLDPELISDVLRRITEDGPLSTKDFETRRADRTAMWTRPPHKM VLDYLWYAGELATSHREGFTKYYDLAERVYPQDVPQLSDQAQVQGLCHAALDRIGFGT LGQIRKFWEACAVEEVARWAEEAAPDLIEAEVEGADGSWSNVLACSDIETRIAALSSP TSRLRILNPFDPAIRDRKRLARLFGFDYTVEMFVPAAKRQWGYYIYPLLEGSRLVGRA EIKGDRSKGTLTLSKLWMEHPHLKTPKRLQKLDAELGRLARLAGLQRVIWAVE" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3685 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(482495..482959) /locus_tag="Silicibacter_492" /function="COG: Enzyme related to GTP cyclohydrolase I" /translation="MSEDIYQNLKQLGGETRIPASPEEAELERVANPQADVAYNVRFT APEFTSLCPMTGQPDFAHLVIDYVPGPWLVESKSLKLFLTSFRNHGAFHEDCTISIAR RLVDFLDPQWLRIGGYWYPRGGIPIDVFWQSGTIPEGVWIPDQGVPPYRGRG" /product="GTP cyclohydrolase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3753 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(482976..483683) /locus_tag="Silicibacter_493" /function="COG: Organic radical activating enzymes" /translation="MTLRIAEIFGPTIQGEGALIGEPTVFVRAGGCDYRCSWCDSLHA VDSAHRHSWAAMETEAVWQEVRRLSGDQPLTVSLSGGNPAIQDFGPLIARGKAAGYRF ACETQGSIPRPWFSDLETLVLSPKPPSSGEDVDWGAFIACRKIGAGARQQVMKIVIFD EADYLWAREVHRRHSDLPLYLQPGNPEVDPETPVDLNAQAERLRWLTERAMGERWFAP RILPQLHVLIWGNKRGV" /product="radical SAM domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO3752 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(483680..484033) /locus_tag="Silicibacter_494" /function="COG: 6-pyruvoyl-tetrahydropterin synthase" /translation="MFRIRKEFHFSASHQLSHLPLDHQCARLHGHNYIVVVELAAESL NADGFVRDYHDLKPLKTYIDDHFDHRHLNDVMDSPSTAENMARHFYEWCAARWPETSA VLVSETPKTWAEYRP" /product="6-pyruvoyl tetrahydropterin synthase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3903 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(484033..484734) /locus_tag="Silicibacter_495" /function="COG: Predicted PP-loop superfamily ATPase" /gene="exsB" /translation="MKTLVICSGGLDSVSLAHITSQKYQLTRLVSFDYGQRHRKELDF ARAAATRLGVPFHLIDMRSIGGALSGSALTDDIDVPDGHYAEDTMRITVVPNRNAIML AIGFGVAAAQGDEAVATAVHGGDHFIYPDCRPGFTRAFETMQRAALDGYADVRLHTPF VEQSKADIVRAGAAHNTPFAETWSCYKGGDIHCGRCGTCVERREAFHLAEVADPTVYA DPDYWSAAIAGREAE" /product="ExsB" /transl_table=11 /note="identified by match to putative ortholog SPO3751 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 485245..486033 /locus_tag="Silicibacter_496" /function="COG: rRNA methylases" /translation="MNKKSNKKPAWVVEKEKAKKAAASETVWLFGLHAVRDALLNPKR EKLRLVVTLNAQNKLEDAIATSGITPEVVDPRKFSVPIDPGSVHQGAALEVKPLNWGG LEDNCIGAEVPRVILLDRVTDPHNVGAILRSAEVLGASAVIGTRHHSAPETGALAKTA SGALERQPYLRMRNLSDTIVALQQMGYLVLGLDGEAEETIEEAVAGRTKEPIALVLGA EGPGLRQKTKETVDKLVKIDAARGFGSLNVSNAAALSLYASLKG" /product="RNA methyltransferase, TrmH family, group 3" /transl_table=11 /note="identified by match to putative ortholog SPO1150 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 486106..486447 /locus_tag="Silicibacter_497" /translation="MQSAFVPDATLHALVCGTCGAPLKAQKQRPLSDHKGAKLPNAST LQPHGRDDKAAKVKKPKPVKTGKPGKSGKSGDWSTLAHELASAKLMKKRKKKKKSSWK MVFDVIEDIFD" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 486620..487102 /locus_tag="Silicibacter_498" /translation="MPTHPLTLALRSASLAVGLALMVALVPVSKAAAGPIYIAVQDGY AMGGYDPVSFHEAEAPLRGHQDHALMWKGAVWLFHSAQNRSRFEADPRAFAPRFGGHC AYGLSRGHASVGDPETWEIVDGQLFLFNSARGRSLWQEDRQQMLKAAQASWPEALRAQ " /product="twin-arginine translocation pathway signal sequence domain protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1152 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 487430..487894 /locus_tag="Silicibacter_499" /function="COG: Predicted CoA-binding protein" /translation="MYSDTLLKDVLRRTHSIAVVGVSTNPVRPSYYVARYLSLKGYRV IPVNPGHAGKELFGETIRATLSDIDAPVDMVDIFRRPEAVPEIVDEALAVFPALQTIW MQIGVEHAEAAAKAEARGLTVIQNRCPKIEYQRLFGELRQGGFATGIISSKL" /product="Protein yccU." /transl_table=11 /note=", CoA-binding, CoA binding domain" /note="Conserved hypothetical protein" CDS complement(487875..487985) /locus_tag="Silicibacter_500" /translation="MRILPDPSGPLQLFKNISGSGAAPRRVPPVVTVSMK" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(487969..488532) /locus_tag="Silicibacter_501" /translation="MSATPMSDDPTSLAPMQLTYVMTTERGATDRLLTALAEQLASKG IRTAGIVQTNTECYDNKLCDMDVRVLPEGETIRISQSLGEGARGCRLNPDALERAVGL VTSSLSLSPAPQVLLVNKFGKHEADGRGMRPIIAEALAMGVPVVCGVNRMNVEAFQNF AEGLCEEASPDLDALVAWVERAIAHPA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1135 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 489051..490877 /locus_tag="Silicibacter_502" /function="COG: Thiamine biosynthesis protein ThiC" /translation="MNTPTRHPTPNVTTGALPASRKIYVAGEMHEGIRVPMREIATHP TAGEAPLPVYDSSGPYTDPDVSTDIREGLAPLRAAWIKARCDVEAYSGRDVTAADNGF VEGDRLVPEFPVKPAPLRGRQRAAPTQLAYARAGIITPEMEFVAIRENQLRDLSPCHC ARDGEDFGANIPDYVTPEFVRAEIAAGRAIIPANINHPELEPMIIGRNFKVKINANMG TSSVTSSMEEEVDKLVWAIRWGADTVMDLSTGRNIHNTREWIIRNSPVPIGTVPIYQA LEKVNGIAEDLTWEVFRDTLIEQAEQGVDYFTIHAGVRLHMVPMTVERVTGIVSRGGS IMAKWCLHHHRESFLYEHFEEICDICRQYDVSFSLGDGLRPGSIADANDAAQFAELET LGELTKIAWAKDCQVMIEGPGHVAMHKIKENMDKQLECCHEAPFYTLGPLTTDIAPGY DHITSGIGAAMIGWFGCAMLCYVTPKEHLGLPDRDDVKTGVITYKIAAHAADLAKGLP GAQRRDDALSRARFEFRWEDQFNLSLDPETAQSFHDETLPKEAHKVAHFCSMCGPKFC SMRISHDIRAEAQKEGFEAMAAKFREGGELYVPLKDTAPEEA" /product="Thiamine biosynthesis protein thiC." /transl_table=11 /note=", Thiamine biosynthesis protein ThiC, ThiC family, thiC: thiamine biosynthesis protein ThiC" /note="Conserved hypothetical protein" CDS complement(491044..491817) /locus_tag="Silicibacter_503" /function="COG: Uncharacterized proteins, homologs of lactam utilization protein B" /translation="MTSTVDLNADMGESFGPWVMGRDAEVLDVVTSANVACGVHAGDW DVMAQTMADAVARGVGIGAHPGFPDLQGFGRRKLHLPHESLGNLVQYQVGAAQAMAEA AGGKVRHLKLHGAMANMAAADHDMARACYEAALRVAPEIIIMVMAGTQQQAAAEALGC NVACEIFADRAYNADASLVDRSLPGAVIHDAERAGARVAQMVQDGAILAEDGSRIPAR IDTICLHGDTPEALEIARAVRRQLEDAGVTLQQFDGKPL" /product="LamB/YcsF family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3659 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(491859..492884) /locus_tag="Silicibacter_504" /function="COG: Allophanate hydrolase subunit 2" /translation="MSVRLIVHRAGPGLSIQDLGRSGYLAFGLSRGGAADRLALYEGA ALLGQEPSAAAIEMAGLGGTFEVTTDTRIALTGAPMKATLQDGSELRWNASHLLAAGM QLSIGAVRAGSYGYLHVGGGIANALQLGARSAHLASGLGARLRDGAELPLGDDAGGAV NMTLTPEPRLDGGTLRMVPSLQTSLFGAAEVARFQEVRFHRDSRANRMGVRLLPEGQG FALEGGLSVLSEVIAPGDIQVTGDGTPYVLMSECQTTGGYPRIGSVLPCDMPRVAQAQ AGAAFRFEQVTLEEAVEIERRARAERERLPSRLTPLVRDPARMRDLLSYQLVSGVTAG RDLDEAL" /product="urea amidolyase, homolog" /transl_table=11 /note="identified by match to putative ortholog SPO3660 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(492881..493651) /locus_tag="Silicibacter_505" /function="COG: Allophanate hydrolase subunit 1" /translation="MTKSPIRVEPPVGDTQWPEVATAGFDGVVVRFADRLSEPANRAA LAFRAAVDVAGWAAVEETSTSLVSTYLRFDPLGTSHAEMIAQVAALLETRDWYAAALP QGRKLWRVPTVFGTELAPQLEEAAARAGLSAGEAVTQISQTRLRVQTIGFAPGQPYLG ELPPAFDIPRQTELTPEVPEGAVVVAIRQIVLFSVTTPTGWRHIGQTRFRLFRPDAPE PFVLRPGDEVLFEPISPERYAALERAGVDGGATSEVLT" /product="allophanate hydrolase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO3661 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 493788..494702 /locus_tag="Silicibacter_506" /function="COG: Transcriptional regulator" /gene="gcvA" /translation="MSRRHYNLPPLTTLTAFEAAARHLSFKDAAKELSVTPGAVSHQV KALEGELGVALFRRKHRGVDLTVPGQTLYDTLAGSLTRISQSLQSIRDQSSAGVVTVG STTAMAAMWLSPAVIRFWRDHPEININQVVRDRAFTTSAELDLYIWYGREKDQRLDQF PLYRDRLLPVAAPERAAELAGADLDVLASQRLIHLEGDDISWTKWHDWFRQLGYSGPV ASGIRVNNYSIALQAARDGAGLTLGWERLISPLITQGDLAIIGPHVLPAPERFFLVSK PDEELTPSARLLRDWIIEEASQITDEPC" /product="HTH-type transcriptional regulator blaA" /transl_table=11 /note=", HTH-type transcriptional regulator blaA (Beta-lactamase regulatory protein blaA)., LysR, substrate-binding, LysR substrate binding domain, dsdC: D-serine deaminase transcriptional activator" /note="High confidence in function and specificity" CDS 494796..495950 /locus_tag="Silicibacter_507" /function="COG: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit" /translation="MTKPVSLQSVLTSVNRANGLPNAHYIDPVVFAEERAAVLFANWS GVGFGKDIPNPGDAKPVDFLGVPLLLVRDHDGGVHVYQNTCRHRGMILVEEAKNIRGT IRCPYHSWCYSLKGKLRAAPHVGGVGQNTHADVKMDELSLVSFRAHVWQDVIFVNIDG KAAPFEEVHADLLQRWQEFDRPLHHGGPESSLKLEVKTNWKLAVENYCESYHLPWVHP GLNSYSRLEDHYNIEKQGKYSGQGTLVYRQLRGAEDEVFPDFEGLSDKWETGGEYVAL YPNVLLGVQRDHSFAIVLEPKGCEETVEHIELYYAKSSAETPELDPLRHQNAQLWKTV FEEDVFVVEGMQKGRHGPMFDGGRFSPAMDGPTHNFHHWVATQIEAARAS" /product="rieske 2Fe-2S domain protein" /transl_table=11 /EC_number="1.14.15.7" /note=", Choline monooxygenase, chloroplast precursor (EC 1.14.15.7)., Rieske [2Fe-2S] region, Rieske [2Fe-2S] domain" /note="High confidence in function and specificity" CDS 495947..496216 /locus_tag="Silicibacter_508" /translation="MSAVELQISPQEAAALHHAILAAHAKHDLAQLVELYAIAADGKE AEGDTDAACFFLTQAFVFALEAGVARAQELNHRLVAYGRAWPLEQ" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(496268..497287) /locus_tag="Silicibacter_509" /function="COG: Transcriptional regulator" /translation="MVPSIWGRACLDPIQSYCEIVLEKTINGTCGYHMPELSLRHLRY FAVLSRALQFRRAARQLGISQPSLSLQIAALEEIVGAPLLERRRNGLILTAAGRDVAA RAERILADCELLVNASATRRAGLSGTLRLGSSPTIGPYILPQVLKRLHETYPDFRLII RDGPSRDLLEDLVAGKHDLILTQAPIQRDDIRFHPLFREPLYLVVPRGHPLATAGVAR RRDLGQEQFLSLNPAYALRRQVEGLAQTVGARMQDDIDGTSLDAIRQMVALGMGVTLM PQSYTRSEIDNRKDDVCVVTLKPGLERHIGLAWRVSSGNPASFEELAEAIAVMGKTDP KAAIT" /product="transcriptional regulator, LysR family" /transl_table=11 /note="identified by match to putative ortholog SPO2238 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 497306..497587 /locus_tag="Silicibacter_510" /translation="MCPTKWRFPMKDSPKVKAFSLEVRLTKLRLKHQTLKARIAREMK RPSPCSATLQLLKRQRLRLKDEIVSCANRLRALGRRNLASGPMLSRPTS" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note=", Protein of unknown function DUF465" /note="Hypothetical protein" CDS 497629..500139 /locus_tag="Silicibacter_511" /function="COG: Glycine cleavage system T protein (aminomethyltransferase)" /translation="MRIIEVAQGGAAVEHFPNAPSPQQSKGTLIMRTEAKAVVIGGGV IGCSILYHLTKLGWSDVVLLERDELTSGSTWHAAANIHGLHDSTNISRIQHYTMTLYK ELEQETGQGCGVFQPGSLYLAQTEDRAHQLRLQAAKAKLYGMNFYEISIEEAQELNPL VNFDGIRCVMYEPDGGNVDPSGVTQAYATGARQRGAEIHRFTPVTATEAQPDGTWIVK TPKGDIHTDWVVNAAGLWGREVAKLAGLELPLQPTEHQYFVTETIPEIAGMERRLPSV SDRDGEYYLRQEGQGLLVGAYEKGMKFWAEDGTPLDFAHDLFPDDLERIEENMMNAIE RVPVVGDAGIKRVINGPMIWSPDANVLFGPVPELSGYFCCNGIIPGFSQSGGMGLMAA QWMIEGETQFDMFNWDVARFGDWATKEFTKARVEDQYAHRFAIHFPNEERSAGRPART RPIYEMQREMGAVFGLNAGWEHPLWFADQPGAEDTNGFTRQNWWGPVGEECKMLRARA GIIDISNFAKYRCKGPDAEDWLNAVFANRMPKAVGRSCLTPLISKRGGIAGDFTVTRL AEDEFWVIGSGMAERYHKRFFGAVPLPEGTSFESLTQEVCGFNVAGPKSREMLQRMTN EPLDTASFPFMRSKRLMLAGINVVALRVSFTGDLGWELHCATEDQEKLYIALIEAGRE FGAGPVGSRALMSLRVEKGYGSWSREYSPEYFPHEVGFQPLCKMDKDFLNKSAAETAM GTPAREELVLLHLTAEDVEASDADATGGEPIFKDGRGIGRVTSGTYGYTVGMSLALGY VKDAKPGDTVEVMVLGRAHRAVILAEPPFDPKGERLRA" /product="aminomethyl transferase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO0207 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(500136..501380) /locus_tag="Silicibacter_512" /function="COG: Glycine/D-amino acid oxidases (deaminating)" /gene="dadA" /transl_table=11 /note=", D-amino acid dehydrogenase small subunit (EC 1.4.99.1)., FAD dependent oxidoreductase, FAD dependent oxidoreductase" /note="High confidence in function and specificity" /product="putative amino acid oxidoreductase" /translation="MSEILVLGGGMVGISTALELQARGHAVTVVDRKAPGQETSYGNA GLIQAEAAEPYAMPRALPEILGILSGRSNDVIWSLRGVLSQLPALWQYYRYSHPHRHL ALSQPNAHLIRTACADHDRWITAAAAQDLIAQDGYLSVFQDAAMFDSLASDLERLRQS YGVEATAMSGPQLCKMEPLYQRPPVGGIHWRDVWSCAAPGELVARYAALFQSRGGEIC TGDASTLRPEGSAWALMSEAGRLHGEHAVIALGPWTPPILAQLGYRVRMIMKHGAHRM YPTGPKLRRPVHDAQHGIVLSSMKGGLRMTCGVALEASGRVPDARQLDRGAKGLAAYM DLGTAEGGPIWHGTRPFLPDMLPMVGAAPRHDRLWFHFGHGHQGFTLGPTTARHLGAL IDGGDSAGIAALLPQNRPAVLS" /EC_number="1.4.99.1" CDS complement(501483..501833) /locus_tag="Silicibacter_513" /function="COG: Putative translation initiation inhibitor, yjgF family" /translation="MSDITYAHTTQRMSQIVTHGDTIYLAGQVGTAGASVTQQTQDCL DKIDALLAEAGSSKERILQATIWLADMSDFAEMNAVWDAWVPEGRAPARACGESKLAT PDFTVEILIIAAKG" /product="endoribonuclease L-PSP family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2000 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(501869..502897) /locus_tag="Silicibacter_514" /function="COG: Deacetylases, including yeast histone deacetylase and acetoin utilization protein" /translation="MKAIYDPRQRAHNPSQFMAFGVMKPNPEQPERTEILRSGAEAAG CTFTAPEDAGLGPIAALHSPEYLTFLQTIHARWSEIEGAGPEVISHIKPGDRRDSYPR SALGQAGYHQADTSCPINADTWGSAYWSAQTAITAADLIAKGERAAYALCRPPGHHAF GDMAGGFCFLNNSGIAAQLLRDRGLRPAILDVDVHHGNGTQGLFYDRDDVLTLSIHAD PADFYPFFWGHSSERGEGRGRGYNLNLPLPRGTEDAPFLDALDTCLDRVRAFGCDVLV IALGLDASVDDPFQGFQVTGDGFSRIGEAIARAGLPTLFVQEGGYISDSLGHNLTRVL GGFTSAAR" /product="acetylpolyamine aminohydrolase" /transl_table=11 /note="identified by match to putative ortholog SPO2002 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(502917..504203) /locus_tag="Silicibacter_515" /function="COG: TRAP-type C4-dicarboxylate transport system, large permease component" /gene="dctM" /translation="MIILGSLFILCVLLLIGVSVPLAFGGVLVFIGVFGGHDVTGFLP TGHWKMNSIVLLAIPLFILAGAIMERGRIAAPLVSVAELLVGRIHGGLSAAAVFASGI FGSISGSAAATLTCIGSIMMPHLKAANYPRGPAAALIVAACPLGLLIPPSSSQILYAW VAQQSVLKCFLSTVVPGLILITLLCMVNYVLMRKADLKLLERPASYPQEFVRRGGRAF PALLMPIIILGGIYGGIMTPTEAAGVAVIYAIPVGLFIYRGLTPQNIWPTLRYAGTTI GVVMLMVFVVVIVSRFLVFEDIPGMAKDLIFSISDNPIVILLMVNLVMILIGMLMDDI SGLLLSAPLLLPIVQSVGMDPVHFAAVLGVNLGMANITPPTAPLLYLGAKVTDTPVSE MLKPTFIMILFAWLPTLLITTFVPEVALWLPNFVFG" /product="Hypothetical protein HI0147." /transl_table=11 /note=", TRAP dicarboxylate transporter, DctM subunit, TRAP C4-dicarboxylate transport (Dct) system permease DctM subunit, dctM: TRAP transporter, DctM subunit" /note="Conserved hypothetical protein" CDS complement(504208..504771) /locus_tag="Silicibacter_516" /function="COG: TRAP-type C4-dicarboxylate transport system, small permease component" /translation="MKDLSQDLPAGLAKLVRILLRLQTIYVCFGCIAMALTFFFVVVF RYGFNADLFAYEEWLLIICFWLYFIAAAIGTWEGAHVNADLLDFVILDPVKRRARAIL ITAIELLVTLVLFYWSTVMMIEEIGDYPRYQTTIALQIPFFVPRAAIFFGFGLMGLYS ALRFFVFLKLPATRFAVSADSDPAQGA" /product="Hypothetical protein yiaM." /transl_table=11 /note="Conserved hypothetical protein" CDS complement(504859..505860) /locus_tag="Silicibacter_517" /function="COG: TRAP-type C4-dicarboxylate transport system, periplasmic component" /translation="MRKSLLTTAATAAAFTLSLGAADAADMRLKLAGVVPVEHFGNDI LKQIEADIEGADVGLSVTLFEAGQLGSGEELFEDAARGNVDLVHSVIYAHRDPVLEIN SLPYLVSSFDEMEDIYLNKDSAFNEIFAERLEGLGLKLLANAPEGFIGVVAENLPENA TSVGDKDVNIRVWSSQVIKNTVEAMGFNATTMNWGEVFPAIQSGVVDGAICCTAQLAY SAFATSDVGKYFIPYGAVVENTTYYASMETWEEMNDEQRAAVQAAFDKAAQTYFAEAK ANEAGYIDKLKETGYEVVEVSDAERSAIAETVRKDVWPGIAEIVGQDVIDRLMTAKN" /product="Putative ABC transporter periplasmic binding protein yiaO precursor." /transl_table=11 /note=", TRAP dicarboxylate transporter- DctP subunit" /note="Conserved hypothetical protein" CDS 506032..507093 /locus_tag="Silicibacter_518" /function="COG: Transcriptional regulator" /translation="MVLNIRHLAAHTQGRQTHSQTLDFKNMTPPDQVHPRPHIDPERL TREMNWNLLRTFVVLAESGSITEAAERLRLKQPSVSVALKKLEDQLGQHLIDRSPGHF TLTKAGQMLYREAVNINGSILRLATLMRTVTPEISGHVRIAVASHVLCPLFDSVIGDF YAAHPKASLAIDVITSGDAITAVAAKRVSFALALVREQDPNLRYLPVYRETFGLFCGP RHPLFGRSDLTLEDLKGHAAVVFDNDRLQDALQDVTLLRARAALAPEITGVSENLEEV RRMIMAGLGIGPLPKHVVARDIEDGLLWQVPPFEDLPEVDVYLIWNPTTVRNRAEETL LTTLIERLETVPFAERSYA" /product="transcriptional regulator, LysR family" /transl_table=11 /note="identified by match to putative ortholog SPO2010 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 507209..508141 /locus_tag="Silicibacter_519" /function="COG: FAD synthase" /gene="ribF" /transl_table=11 /note="identified by match to putative ortholog SPO3154 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="riboflavin biosynthesis protein RibF" /translation="MRIIRDYQFVEEQDRGATVAIGNFDGVHRGHRSVIDLARKAAPD APLGVMTFEPHPREFFAPNAPPFRLMSAEARAHRLEKIGVEKLYQLNFNHALSSLTPE EFARNVIAEGLGLSHVVVGADFCFGKGRAGTVEDLQRFGQDMGFGVTIAPLMGYSEHT VSSTAIRTALSEGRPRDAAAMLGHWHRIEGEVIGGEQRGRTLGFPTANQSIDGLHPPA FGVYAVLVDVLDGPHKGSYHGAASVGVRPMFDGEQPNIETYLFDFKGNLYGAHLSVGL VDYLRAELKFDGLEPFIAQMQADCDQARAILTSL" /EC_number="2.7.1.26" CDS 508151..508621 /locus_tag="Silicibacter_520" /translation="MTNQIDRNGLTPKFWEKKPLKTLSQREWEALCDGCGKCCLNKLE DEDSGEVALTRVACRLLDDQSCQCAHYETRHSFIPECIVLKPENLDTHAYWMPQTCAY RRLWEGKSLPDWHPLVTGDPDSVHRAGVSVRGMTVSEFDTPLEEWEDYIIEEPV" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3155 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(508671..509507) /locus_tag="Silicibacter_521" /function="COG: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)" /translation="MSLDLSALPQEVYHRKFGTGARHLVAVHCSLAHSGAWRGLVGAL GEDRVSCTAFDMLSHGKSPDWDGQGLLQRRNAEAGLCLLEAEVAETGGPVDLIGHSFG ATVALAMAEMRPDLVRSLVMIEPVLFAAAKVQNPDALEQMRSDHMAVRSPYAAGDVEY ATRLFNRAWGTGHPKWPDLPEHARAAMVRSFPAVMDCDSQVYDDAAGLLAPGALEALE MPVLVMQGGATQPIMTAVTDALSARMPEAQISVIKGAGHMVPVTHPEAVAEVLRAFWS QR" /product="hydrolase, alpha/beta fold family" /transl_table=11 /note="identified by match to putative ortholog SPO3157 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(509504..510118) /locus_tag="Silicibacter_522" /function="COG: 2-hydroxychromene-2-carboxylate isomerase" /gene="nahD" /translation="MTASSLSIDYYFSTLSPFSYLAGQRLEEIAARHGAAVTYKPFDI MALFARTGGTPPKDRHPARQAYRLIEMERQSKRTGLPLNLKPAHWPTNAAPSSYAIIA AQKAGGGDLGALVHGTLRAVWAEERDIAQDDVVKSLLESAGFDPALADSGLLTGAEIY AQNLEDAVNADVFGAPFYVTSDGAKFWGQDRLVDLDEHLAGQGA" /product="2-hydroxychromene-2-carboxylate isomerase" /transl_table=11 /note="identified by match to putative ortholog SPO3158 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 510223..511245 /locus_tag="Silicibacter_523" /function="COG: Phosphoribosylpyrophosphate synthetase" /gene="prs" /transl_table=11 /note="identified by match to putative ortholog SPO3159 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ribose-phosphate pyrophosphokinase" /translation="MPTLNEPKLISGNANLPLAKSISRRMSMHRGVDQDLVNARVERF NDGEIFVEVYENVRGEDMFIIQPTSNPANDNLMELLIIADALRRSSAQRITAVIPYFG YARQDRRTKARTPISAKMVANMLTGAGIERVLTMDLHAAQIQGFFDIPVDNLYASPIF ALDVKAQFKDQMDDLMVVSPDVGGVARARELAKRINAPLSIVDKRREKAGEIAEMTVI GDVKDKICLIVDDICDTAGTLCKAAQILLDNGAKEVHAYISHGVMSGPAVERVTNSVM KSLVLTDSIQPTQPILDAPNIRIVPTAPLFTQAILNIWHGTSVSSLFEDKTLIPIYES LYNSQS" /EC_number="2.7.6.1" CDS 511602..512963 /locus_tag="Silicibacter_524" /function="COG: Predicted nucleoside-diphosphate-sugar epimerases" /translation="MLKSFFQQRICMNASKPNTPLELTVLIIGAYGLIGCGVAQRLER DGHRIIGLGRDTDTGKRVIPTIDWLPADLRSLTKASAWQPFLEGINAVVNCSGALQDG PEDDLEVVHHHAVAALAEACATSQVKLVQISAVGASEDAATPFLASKGRGDAAVQRAG KDHHIFRPGLVLARHSYGGTTMLRMLAAFPLVQPLAVPDAKIQTVALDDVAKAVSAAL AGDIPNGFVGDLVETETHSLRNVVASIRAWLGFAPTKHEFLIPSLFTISMSKIADGLG RLGWRSPLRSTAIKVLDDGVTGVPTDLSRFGLSPVRSLSQTLASMPARAEDRLFARMA LLTPIIIATLISFWFLSGVIGLLQIGEAALVLENVGWTHALAATSVLFWSIVDLAIAA AFAYRPYAKKACWCAVGVSLFYLGASTVFVPHLWLDPLGPMIKVLPSIALALVARIAL ETR" /product="hypothetical protein" /transl_table=11 /EC_number="1.6.99.3" /note=", 3 beta-hydroxysteroid dehydrogenase/delta 5-->4-isomerase type VI (3Beta-HSD VI) [Includes: 3-beta-hydroxy-delta(5)-steroid dehydrogenase (EC 1.1.1.145) (3-beta-hydroxy-5-ene steroid dehydrogenase) (Progesterone reductase); Steroid delta-isomerase (EC 5.3.3.1) (Delta-5-3-ketosteroid isomerase)]." /note="High confidence in function and specificity" CDS 512960..513433 /locus_tag="Silicibacter_525" /translation="MIVWIDVVRLLHVLGACVLIGTGAGIAFFMVMAHRTRDAASIAH TAHIVVIADMLFTATAAVAQPITGFVLARYYGWPLWEGWIAVSLALYVFIGLFWLPVV SIQIKMRDEARTSAQTATPLSARYMLLYRIWFACGVPAFLAIVALLWLMVVRPAI" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3062 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 513520..514383 /locus_tag="Silicibacter_526" /function="COG: Permeases of the drug/metabolite transporter (DMT) superfamily" /translation="MHTTDLLRLAALVFTAVTCVVLGDTAGKVLTSGGVDPVIVAWAR FGLGALVLLPLSGLRLTELSIARDWRVWLRAGFVTAGISCILTALRTEPIANVFGAFF VGPGVSYVIAVLFLGERPSPLRSLLLGLGFIGVMLVVKPGFGVSFGLFYALAAGCFYG AYLAMTRTVAGSYRPRLLLMSQLLIGTLLLTPMGLSVEMPTLDWTIFTLLSLSALGSA VGNYILVVVNKTAEASLIAPLVYSQLISATVLGVVVFGEWPDVISLCGLGLILLSGFG SLLAHQRATPL" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO0450 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(514446..515939) /locus_tag="Silicibacter_527" /translation="MKACFPFATAVIAATSLADVARATDMAVVTSDDCILTIGRSADV SPGFALPVRFIDIERPEPAADGAKSALTPIATALAVKLVETAFESGVSYLNKKANPDP KTAERMIGVDMFRVANEMEVLAPTKDDPEKTKTVRPVFLNPALRCLTVVTASAPIQTE AGAIRTADLLQRIAQDQETVEAWTQETETNGLSDETAGYRLAKAGIAVLEGGSLGTIL ELRLEVTADGSAFRYVPVYFDVMNFATEGKEKRDIGVTIKVSSLGTSSDNTVALASFH ANQLSAVTGSGGNVGVSVQSSKAFGGFGPTTVEAVLGRGAWSKFAMPSAALPQSIQDL LNLGSLDGLQGNAEFTPFVNEVQRLQTAPFTYTPVNISVSFEESTEASRVVTFLDDFV KDNDALKDQLEKSTLKALGLQSDADALAELVALKQKEIDAAEAHLAVFKADPDNLLDA KKEWFDKVVADREQQIAEKKAELAALQFGQDTYVPTSSLDLTEPDVD" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(516078..518522) /locus_tag="Silicibacter_528" /function="COG: Cation transport ATPase" /translation="MTQPITARLSIEGMTCAGCVGRVDRTLAALPGLRDVSVNLANET AQITAESPEALQQADSALRDLGKPARHQSVQLSIEGMTCGGCVGRVERAIKALPGVVS ANVNLAAESAQVEILQGVVTPSEVAAASTQAGYRARPAEATDTEDRAARKDREARDLR RQVMIAAALTLPVFLLEMGGHVVPAVHHWIAQTIGMQTSWVMQALLTTAVLFLPGRAF FTLGLPALRKGAPDMNSLVALGAGAAWIYSLVATFAPALLPADVRAVYFEAAAMIVTL ILIGRWLEARAKGRTGAAIQALVGLQARHARRLTKDGQPEDVEVEDLAPGDRILVRPG ERIPTDGTVLEGTAHVDESMISGEPIPVEKTEGAPVTGGTVNGEGSLTVAVTRTGAET TLAQIIRMVEDAQGAKLPIQSLVDKVTLRFVPVVMVLAVLTVGVWLLVGPEPRLTNAL VAGVSVLIIACPCAMGLATPTSIMVGTGRAAEQGVLFRKGDALQSLHEVDIIAFDKTG TLTEGRPSLVALRPTEGFERAEVLASVATVEARSEHPIARALVTAAQDEGLSLGEVSN FQSLTARGVTAEVAGREIRIGSARLMSEAGISVDALASEALERAGRGESVLYAAIGGQ LAALLAVADPIKPTSAEAIKALRAMGKDVAMISGDAPATAEAIARDLGISHVVAGVAP EGKVSALRDLASRGRKLGFVGDGINDAPALAQADVGIAIGTGTDVAIEAGDVVLMSGD LRGVATAIQISHKTLVNIRQNLGWAFVYNAALIPLAAGALYPAFGILLSPVFAAGAMA LSSVSVLTNALRLRRA" /product="copper-translocating P-type ATPase" /transl_table=11 /EC_number="3.6.3.4" /note="identified by match to putative ortholog SPO0794 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(518687..519040) /locus_tag="Silicibacter_529" /function="COG: Predicted transcriptional regulators" /gene="cueR" /translation="MLKIGDLAQRTGVSADALRLYERRGLIRSERMANGYRVFDPEME RLVKLIRLGQSIGFTLREMEHVIATLSSRDLSAAQTATLIQDRIDAVDVKLAELTELR RLLVDLQDQACPLRG" /product="HTH-type transcriptional regulator cueR" /transl_table=11 /note=", HTH-type transcriptional regulator cueR (Copper efflux regulator) (Copper export regulator)., Putative DNA binding, MerR family regulatory protein" /note="High confidence in function and specificity" CDS 519107..519547 /locus_tag="Silicibacter_530" /translation="MFCDGMNKKVYLASAWYDLAMSVPFALPITLSLTWGYVMIPLNA ALGFGVLEPLETHGAMFANFYGSIVMLWALLRLYLADVRLAVVDGTGRFLYSIAMINA LMHGATPLLWFFLTVEITFCVLQLAGAVARYRRQAPHRGAETPV" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(519903..520427) /locus_tag="Silicibacter_531" /translation="MAKREPLTFWQWHFSKTKRFTILLFGANAAGPFCLWLLLSGAAA TSGDASVARLQMSLVLWVVLLAVLYWLFRKERQITPAKISQGDKIRFRSIPSDLDADH ILHPIEPATNGMPLTQQKIFSYLVTCGDHFTVYDSAAAGGKELHLKLCVEDRMQTYVV PVPVDDSWYVSRYA" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(520437..520835) /locus_tag="Silicibacter_532" /translation="MSNFRCFHTSRGCSVRNTTFRSQRTGVAQGDVEVFSEFDSGGSM WTGSGGRERRLNVRFDHPFRAIPAVQVTASLMDMHQDTAHRSELVAENISETGFDVVF RTWSDSRVARVRAAWMAIGDLPFEDDWDVE" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3160 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(520918..521331) /locus_tag="Silicibacter_533" /function="COG: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit)" /gene="atpC" /transl_table=11 /note="identified by match to putative ortholog SPO3161 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ATP synthase F1, epsilon subunit" /translation="MADTMQFDLVSPERSLASLQARAVQIPGAEGDMTAMPLHAPTLT TLRPGILKVDAPEGTTEYLVTGGFAQITAEGLSVLAERAIPMDEMTRAHLDELIEEAR TMYKTAQEDNSEHGLVEDAAKMLADMEALGTHMSL" /EC_number="3.6.3.14" CDS complement(521343..522767) /locus_tag="Silicibacter_534" /function="COG: F0F1-type ATP synthase, beta subunit" /gene="atpD" /transl_table=11 /note="identified by match to putative ortholog SPO3162 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ATP synthase F1, beta subunit" /translation="MANAKGKVTQIIGAVVDVQFDGELPAILNALTTDNNGKKLVLEV AQHLGENSVRTIAMDATEGLVRGQEVTDTGAPISIPVGNATLGRILNVVGEPVDEGEP IVAKETRAIHQPAPEFNDQSTESEVLVTGIKVIDLLAPYAKGGKIGLFGGAGVGKTVL IMELINNIAKVHSGYSVFAGVGERTREGNDLYHEMIESNVIKPDNLEESQVALVYGQM NEPPGARARVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVG YQPTLATDMGAMQERITSTKNGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLNRA ISELGIYPAVDPLDSSSRLMDPQIVGEEHYKVASDVQQILQRYKSLQDIIAILGMDEL SEEDKLTVARARKIQRFLSQPFDVAKVFTGSDGVQVSLEDTIASFKAVVAGEYDHLPE GAFYMVGGIDEVIAKAEKMAADAA" /EC_number="3.6.3.14" CDS complement(522788..523663) /locus_tag="Silicibacter_535" /function="COG: F0F1-type ATP synthase, gamma subunit" /gene="atpG" /transl_table=11 /note="identified by match to putative ortholog SPO3163 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ATP synthase F1, gamma subunit" /translation="MPSLKDLKNRISSVKNTRKITKAMQMVAAAKLRRAQEAAEDARP YAERFNAVMAGLAASVGQSDTAPKLLAGTGSDQVQLLVVMTAERGLCGGFNANIAKLA RQKVLDLQAAGKTVKILTVGKKGRDVLKREFGDLFVGHVDLTEVKRVGYVDAQGIAKD ILARFDAGEFDVATIFYSKFQNVVTQIPTAQQIIPAEFDAEGAEATSGVVDYEPSEEA ILADLLPRGVATQIFAGLLENGASEQGARMSAMDNATRNAGEMIDKLTIEYNRSRQAV ITNELIEIISGAEAL" /EC_number="3.6.3.14" CDS complement(523679..525220) /locus_tag="Silicibacter_536" /function="COG: F0F1-type ATP synthase, alpha subunit" /gene="atpA" /transl_table=11 /note="identified by match to putative ortholog SPO3164 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ATP synthase F1, alpha subunit" /translation="MGIQAAEISAILKDQIKNFGQEAEVAEIGRVLSVGDGIARVYGL DNVQAGEMVEFPGGIMGMALNLESDNVGVVIFGSDRDIKEGDTVKRTNSIVDVPAGPE LLGRVVDGLGNPLDGKGPIEAKERKVADVKAPGIIPRKSVHEPMATGLKSVDAMIPVG RGQRELIIGDRQTGKTAIALDTILNQKSYNDAAGDDDSKKLYCVYVAVGQKRSTVAQL VKKLEESGAMEYSIVVAATASDPAPMQFLAPYAATAMAEYFRDSGKHALIIYDDLSKQ AVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERSAKLNEDFGAGSLTALPIIETQGG DVSAFIPTNVISITDGQIFLETELFYQGIRPAVNTGLSVSRVGSSAQTDAMSSVAGPV KLSLAQYREMAAFAQFGSDLDAATQQLLARGARLTELMKQPQYSPLTNSEIVCIIFAG TNGYLDKVDVKEVGRYEAELLTFLRSKKADFLQWITDEDPKFKKGEPVEKMKAVLDEF AADFA" /EC_number="3.6.3.14" CDS complement(525221..525874) /locus_tag="Silicibacter_537" /function="COG: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein)" /gene="atpH" /transl_table=11 /note="identified by match to putative ortholog SPO3165 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ATP synthase delta chain" /translation="MPGQNRATSRPRMLPARTHINRGQNNIGRVDVSEPASISAGIAD RYATAIFEIAAESNALDNLETSINDLAASLADSEDLRTLITSPLVSREEQAAAISAVA DKMGLVDVLRNSLALMAAKRRLFVVPALIDALRARIAEARGEVTAEVVSAKALTKTQS EKLAKTLAERVGKKVTINATVDASIIGGLVVKVGSKMIDSSIRSKLNSLQNAMKEVG" /EC_number="3.6.3.14" CDS complement(526197..526943) /locus_tag="Silicibacter_538" /function="COG: SAM-dependent methyltransferases" /translation="MHLDVQDLRNFYYRSTLGRAAQASIRGQLLRMWPDATGETIAGF GFAAPLLRPYLSEARRLMALMPGPQGVMQWPAGMPNVSVLCEETSWPVETGRVDRLVL LHGLETSEQPSALLDECWRVMGPRGRAIFIVPNRAGLWARSDETPFGYGRPYTLTQLE NQLRAHQFTIEQHAAALYRLPSSRRFWLKSGAMIERVGRRLPAMMAAGVFLVEVSKQT HPQKGHMTRARRTNPIRVLEGLSNPIAEPT" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3167 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 526998..527813 /locus_tag="Silicibacter_539" /function="COG: Zn-dependent hydrolases, including glyoxylases" /translation="MTMPDQTSFPSTVANGLEIVTVPCLADNYAYLVKGPDGVALIDA PEAEPILTALEARDWSLGVIMITHHHHDHVGGVAALREKFGCPVMGPKAEADKIAAQG VTLDMELEPGFEGGTGAGRCQVLAVPGHTLGHIAFYYPEAPALFSADSLMVMGCGRLF EGTPAMMWQTMTTLSALPDETLIYSGHEYTESNAGFALSLEPENAALQKRMDEITKTR QNGQPTVPALLSLEKQTNPFLRAGDPNLKKTLGLEGVEDAEVFAHIRVAKDKF" /product="hydroxyacylglutathione hydrolase, putative" /transl_table=11 /note="identified by match to putative ortholog SPO3168 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 528015..530351 /locus_tag="Silicibacter_540" /function="COG: ATPases with chaperone activity, ATP-binding subunit" /gene="clpA" /translation="MPSFSSTLEQAIHAALALANERRHEFATLEHLLLALTEEPDAAR VMRACSVNLDELRSTLLEFVDEDLANLVTDIDGSEAVPTAAFQRVIQRAAIHVQSSGR TEVTGANVLVAIFAERESDAAFFLQDQDMTRYDAVNFIAHGVAKDPAYGENRPVTGAS ESEEEIGGGPSMGSPEGEQKESALAKYCVDLNAKSREGDIDPLIGRDSEVERCIQVLC RRRKNNPLLVGDPGVGKTAIAEGLARKVVQGEVPEVLSETTIYSLDMGALLAGTRYRG DFEERLKAVVTELEEHPDAVLFIDEIHTVIGAGATSGGAMDASNLLKPALQGGKLRTM GSTTYKEFRQHFEKDRALSRRFQKIDVNEPSVEDSIAILKGLKPYFEDHHSIKFTSDA IKSAVELSARYINDRKLPDKAIDVIDEAGAAQHLVAESKRRKTIGVKEIEAVVAKIAR IPPKNVSKDDAEVLKDLEASLKRVVFGQDAAIDALSSAIKLARAGLREPEKPIGNYLF AGPTGVGKTEVAKQLADTLGVELLRFDMSEYMEKHAVSRLIGAPPGYVGFDQGGLLTD GVDQHPHCVLLLDEIEKAHPDVFNILLQVMDNGQLTDHNGRTVNFRNVVLIMTSNAGA SELAKSAIGFGRDRREGEDTAAIERTFSPEFRNRLDATISFGPLPKEVILQVVEKFVL QLEAQLMDRNVSIELTRKAAEWLADKGYDDKMGARPLGRVIQEHIKKPLAEELLFGKL SKGGVVQVGIKDGKLDLRIEGPGKPRLSGNKPPLLTAE" /product="ATP-dependent Clp protease, ATP-binding subunit ClpA" /transl_table=11 /note="identified by match to putative ortholog SPO3169 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(530563..531159) /locus_tag="Silicibacter_541" /translation="MRGSDGFAPGLSGFGLIALTYIVCHGVTIWVIAPAQRFFLDDVS VIASLAYLPHGVRVLSIWLVGWRAILPLIAGAVAANMIFTSSHILDLMQGKMSVSILM SVLSAYAAFEVLRLLGVASYAGGGRRVNWRTLLLTGLLASVFNSVCQTLIFSGIIAPD GTLWELASFVVGDMIGQIVLMIALMMIFRALRGPATRA" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(531280..531627) /locus_tag="Silicibacter_542" /translation="MFDRNMSGLVSGETFLDRLRAIFELRDMLRQMERDIGLESLSPA EKDVFQAAHRLTDVPGQLVVSDQIRQHPLTQGIAQATFHRALRSLLELGFLERPEGAR AKHYMVRKDLLHD" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO0695 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(531861..534215) /locus_tag="Silicibacter_543" /function="COG: Flagellar motor protein" /gene="motB" /translation="MALKRRTGQRFQGSIWPGFVDAMTGLLLVLMFVLTIFMVVQFVL RETISGQESELDELSTEVRALAEALGVKEREASQLQARLGALGATLSSTRSDLDAARE QISNQTARISALTQERDAARSDLATARTQISDFEAQVAALIAGRESAEAQIADLTAER DALDAARSELLSEQEALNLALAQLREEVDAEAEAARLAAAQTEALQALVEDLRAEGAA QSERVSALEEALSEEEATRLAEAAAAEALRARLENADAELTAMTLALEEERKKAEDTL TLLAAAEAARDQLDTELEEALAAIEQAKAQVNDRDELAERLTRVLAQMEVTESTATAR VSALEAELERVRNENAATRERMTADLETARQEAADTRSRLEAELTRQRAQTVETESQY QAQLRAAQESFDAERRALEDRLATLEAQADTTRRDLEDQLAALRGQAEETRSGLETRL ARAEADLAAARAAASSTAEERASVEQRLLIALEALERAQAAASDQEVLQSRLLAALAQ KDDFAQEISEQRTLAEQRADLLAQARAALAEEKQISEDARRETALLNQQVAALREQLG GLQSLLDDFKERDAAQGIQLQSLGQDLNTALARAAAEERRRRMLEEQERKRLEAERER LANEAKDLEQYRSEFFGQLRSVLGNQEGVRIEGDRFVFASEVLFALGSAELSEAGKAE IAKVARILQNVAAAIPDDINWIIRVDGHTDNQRFVGAGKYADNWELSQGRALSVVRYM IDELGIPPGRLAANGFGEFQPVNPADTPEARAQNRRIELKLTER" /product="homology to flagellar motor protein" /transl_table=11 /note="OmpA/MotB, OmpA family, , belas" /note="Conserved hypothetical protein" CDS complement(534219..535397) /locus_tag="Silicibacter_544" /gene="motA" /translation="MAHHEREGRPQFSQPVRQVVMMLIALGLAGAGAFMALPRVMPVF EANPYLNGFIAFVFIVGVLATFWQVMQLINSVRWIERFAAGVTTDEDRAPSMLAPLAA LLRSRGARMQLGSASTRSILDSVAERIDEEREITRYIVNLLIFLGLLGTFYGLATTVP AVVDTIRSLAPQDGEEGVAIFNRLMTGLESQLGGMGVAFASSLLGLAGSLIVGLLELF AGHGQNRFYRELEEWLSSFTRVSFSSGEEGGTGDSNLVAGVLDTMAEQMDALQAMFVE TAKGRAEVEGKLSRLIDTIEDMNRRQDDVASISGALERVAVGQETLAELMRAHGDVGI DAESRMRLRSIDVQMLRILEEISAGRQESLSELRKDIDLLVKAFAGPRGMDRAARKES " /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="homology to flagellar motor protein motA, , belas" /note="Hypothetical protein" CDS 535889..537085 /locus_tag="Silicibacter_545" /function="COG: Uncharacterized protein conserved in bacteria" /translation="MIAYKRSAHSHAASPPRGAQPGTPGSTEESRIQIPTSSYYWSFA ASAYKQQNVHKQKGFHGMKRGLKILFGLCVVWSLYWAVAAWGLRQSVAAWFEEQAARG WQVEVKEITAGDGLGGYPWRHVTQITQPALADPGTGAAWRADWLELQSPAIWPGHQSL RFADGDQRLSYYDQTAVITTQGLQADLFLAPGLALELEELGLTSGSWRIGDDAEATLS ADDLSLRMVQGSVAESYEISAEARAFRPGKALRRLLRAAPKLPQAFETLSLAMDVTFD KAWDLSVLEHRRPQPRQIDLALLEAHWGEMRLKMSGALEVDEAGIPTGEVALQVEAWA EFLALAEDSGLLSPTLREQASRVVAVMARASGNPEDLDITLGFRNGNITIGPIPLGPA PRLIIR" /product="hypothetical protein" /transl_table=11 /note="Hypothetical protein" CDS complement(537154..538020) /locus_tag="Silicibacter_546" /function="COG: Uncharacterized protein conserved in bacteria" /translation="MIAWARHTLAGLALACVAFTGMPVVAAPETTLRPPAVRGGATPE AARVSAMPTAAILPQSAPALRPQLRPVSAQILAAAARPTEQIPVAPDGTLRPMMRTPE FTQQVLFGRAKRRRGAVCGDIDIQGEEAGNIAGTLQGCGARDAVRVRSVSGVGLSRPA LMTCETAKALNKWVSRDVETAFGRSNRVVELRVAAGYSCRTRNNRPGAKISEHGRGRA IDISGFKLEDGTVVSVLRGWADASTSRALRRIWKAACGPFRTVLGPEADIYHRDHFHL DVARHRSGRYCR" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO3175 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(538017..538949) /locus_tag="Silicibacter_547" /function="COG: Prephenate dehydrogenase" /translation="MSEITAKPVYNRVALIGLGLIASSMFWAIKRAGLAGEVTGYARS AETRDTARRIGLCDRVCDTASAAVEGADLVVLCVPVGAMGAVAAEIAPALMPGATVSD VGSVKRHVIEDVAPHIPEGVHFVPSHPLAGTEHSGPESGFAELFDNRWCLLVPVDGSA PEAVARLRALWEGMGAHVDEMDADHHDLVLAVTSHTPHLIAYTMVGVADDLRRVTDSE VIKYSAAGFRDFTRIAASDPTMWRDVFLTNKDATLEILGRFTEELFALQRAIRTGDGQ HLHDYFTRTRSIRRGIIEAGQDTAAPDFGRGAKK" /product="prephenate dehydrogenase" /transl_table=11 /EC_number="1.3.1.12" /note="identified by match to putative ortholog SPO3176 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(538946..540034) /locus_tag="Silicibacter_548" /function="COG: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase" /gene="hisC" /transl_table=11 /note="identified by match to putative ortholog SPO3177 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="histidinol-phosphate aminotransferase" /translation="MTQITPQPGIMDIALYQGGAAHVDGVSNVTKLSSNENPLGPSPA AVEAMAEAAATMHRYPSSDHATLRAAIAETHGLDAERIICGAGSDEIIAFLCQCYAGP GDEVLYTEHGFAMYRISALAAGATPVEVKERERVTDVDALLAGCTAQTKLVFIANPNN PTGTMISEAEVARLADGIPEDAILVLDGAYAEYVEGFDAGAQLIAARHNVVMTRTFSK IYGLGGARVGWAYGPQEIIDVLNRVRGPFNVSTTALAGAEAAVRDTDYVQRCRLENAK WRGWLADQLAELGVPSDTSCTNFILARFASQSEAESCDDFLKQRGLIVRRVAGYNLPT ALRITIGDETACRAVAAAVKDFKAGAAE" /EC_number="2.6.1.9" CDS complement(540447..541871) /locus_tag="Silicibacter_549" /function="COG: Selenocysteine lyase" /translation="MIFDEFKTSIKNTADAGQLAATLIGEGVMIPGLRGDVPLVYADY VASGRAMRPVEDFIAEKLLPFYANSHTEASYCGQYVTRMRREARAEIARLTGAGDDCE VIFAGSGATAGLNRLVKLLGIEEATRPVVFIGPYEHHSNILPWRESRAEVVEIPEGPD GGVDLAALEAALVAHAEADLKIGSFSAASNVTGIITDPDPVTRLLRAHGALAVWDYAG GGPYLPIDMGAHGAEPKDAVVVSPHKFPGGPGASGVLVLRRDAVRAQNPSWPGGGTVS FVSPWSHRYADSLSAREEAGTPNVVGDIRAALAFLVKEAVGQEQIEAREAQYAAKARA AWADVPGLTLLGHAHAHRLPIFSFTVEGASGAPVHQQLFTRMLSDVYGIQARGGCACA GPYAHRLLEIDEPQSEALLRDLLAGRELQKPGWVRLNFSYLMAEETVDYVIESVKALV LEAENVASAYDADPSTARFQPRAA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3178 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 541978..542439 /locus_tag="Silicibacter_550" /function="COG: Transcriptional regulators" /translation="MSKNLDQIDRDLLRALQRDGSLSQRDLAQRVGLSQNACWRRLKA LQDKGILRGTRAELDRSQLDLGLVVFVMLRTRHHSAEWLAQFRRHVLTIPEVVDFHRI GGDYDYQLKVVTRDMATYDKVYQRLIAGVELDSVTSYFAMEAIAEGRPLPV" /product="transcriptional regulator, AsnC family" /transl_table=11 /note="identified by match to putative ortholog SPO3179 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(542485..543054) /locus_tag="Silicibacter_551" /function="COG: Histone acetyltransferase HPA2 and related acetyltransferases" /translation="MDAERGVWALKSKGGRGGAPRSAPLIFHVIHRKKMIAIRPAVSA DAESIAAVLEALRQAGNRKTAGDAAFIRETYIENSHRIACSVAVDAAGRLLGFQSLQI APEGNPYGAPAGWGVIGTHLHPEASGQGIGRALFAVTRAAAEATHLPAIEALISADNA QGLGYYSAMGFVDYRETPTAVGKKLVLTP" /product="acetyltransferase, GNAT family" /transl_table=11 /note=", GCN5-related N-acetyltransferase" /note="Hypothetical protein" CDS complement(543024..543611) /locus_tag="Silicibacter_552" /translation="MSKISTLCRALAGAATLTVALSAVALAAPLKLTPADPQPSNLKP GLSVRYAYPADVKTLSAARNALKYKVEQGAPLAGLDYRDTELGQNVLTAKRAERVVAD IRGYVRFERPGVYTIDFLTNDGLHATVGGQVVGEYDGRQPCEETFAVEVEVPKAGWYP LKALWFQRTNTACLHMRAGPAGKRPKWMPNAAFGH" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3611 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(543807..544427) /locus_tag="Silicibacter_553" /function="COG: Ribosomal protein S4 and related proteins" /gene="rpsD" /translation="MTKRTSAKYKIDRRMGENIWGRPKSPVNRREYGPGQHGQRRKGK LSDFGIQLRAKQKLKGYYGDLTEKQFRRIYGEAERVKGDTGENLIGLLERRLDAVVYR AKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVKEGDVIEVREKSKQNVAVLEAVQLA ERDVPDYIEVDHSKLTATFVRAPGLADVPYPVVMEPNLVVEFYAKN" /product="ribosomal protein S4" /transl_table=11 /note="identified by match to putative ortholog SPO3181 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(544491..544607) /locus_tag="Silicibacter_554" /translation="MPVKVEDHLIQIQEDNALRLLQVFWSRWTLTVQWQTRL" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(544872..545933) /locus_tag="Silicibacter_555" /translation="MKTGFRGTFVISWTQTEIDGLDAAPVAALDVGAAWSWHGDALRV DGPSELLRLDMADGEQDLRRRAARTVRRLVGAAVQNRSDVHAIEIDDPVSDSSFIVTN GVQSYTVTVIEAGRGRPPLLMFVDDIPPRNTDLWVVHHALGYMGADQAPQNPGVICFT PGTRIATPEGPKPVESLREGDRVQTRDNGAQVVQWIGARRMSGARLFVMPALRPVRIR AGALGIDRPERELLVSPEHRMLVRGAAARALFNESEVLVAARDLINGHTIDVDTTVRE VTYVHLLLEQHQVIWANGVETESFHPAHAALSALDDKDRKRLLRRLPAIEHDPASYGA FARRNLSASEAAILRHSAA" /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO3182 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(546066..547007) /locus_tag="Silicibacter_556" /translation="MIRSLALALCAAIALSATGAAFAADPVRAEPLKRHRIGYGHLID NDLIGDGKDRWRTGSVASSRIYGFGWDGQAPAGFGELLELRFLGQILAPDNLRSPAAG ERPWAGALSLGVHTHMQRGTLELSLGGDLVFIGPQTGLDDFQDALHDLANTTRPSDAV RAAQVSNTIRPTLVAEVGRTISLGPRSHLRPFVEARAGDETLVRIGADWTFGSAGIGE LMVRDPVTGQRYRTMYETRGISFTLGADVAHVAQSVYLPEGRGYDLTGRRDRLRAGLH WQGDGRDFFYGITYLGKEFSSQPEGQLVGSLRLRWTF" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(547182..547583) /locus_tag="Silicibacter_557" /function="COG: Predicted sulfurtransferase" /translation="MAQLKTSSAQMVAAARARIAEIDAAAAIALHDAPDVVFVDLRDV RERQRMGFIPGSFHCPRGMLEFWVDPDSPYFKEIFAEEKRFIFHCASGWRSALSVALL QDMGFEAAHISDGFSGWRSAGGPVVEPVDES" /product="rhodanese domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1432 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 547775..549073 /locus_tag="Silicibacter_558" /function="COG: Glycine/D-amino acid oxidases (deaminating)" /translation="MRADTSLSQSNAEPISLWDHSSEEPAYANPNARESRVDVAIVGG GYTGLSTALHGALKGLSCHVLEAAEIGHGGSGRNVGLVNAGLWLPPQQVEHLLGKTHG GALVRTLGEMPDYVFSLIEHHQIRCEATRAGTIHAAHAASGLRDLEARAAGWQALGAP VRLLSAEETAEKTGTVKFHGGLLDARAGTINPMGYVRGLARAARAAGAEISTQTKVLS LQKDGADWKVETDRGVITAGRVVLATNAYSADLWPKLAQSFTPIHFFQLATAPLGAEA SAILPDGQGLWDTGKIMFSLRRDRAGRLIIGSMGSVVGGTAGLSRRWAERKLRRLFPD LGRLDFEDAWHGQIAFTPDHLFRIHRLDEGLYAPVGYNGRGITTGTLFGRALADLFAG APEESLPLPISDLVPDRGRAVKTQLYRSAFLAKQAAESIL" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO0587 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(549126..549932) /locus_tag="Silicibacter_559" /translation="MLKENRSLDRGIEILETLAREGAMSLADLHRATGLPKSTLRRLL QTLIARKIVRRSLADKLYRTLVVFPDISGEVMPKGMLHISEAAIPRALALTKEIGWPS DIHIRETRAMRIIDNTRHASTFHVERGQINQRVSHFGSATGLACLAEMKDAEIATIYE AFKPDLQWGPVRFGLDLAGLMARIEQVRQVGYAERLSAPMSDPDWDTDLRAIAVAIKA RGRVVGGLSVLWLRPYKPVEEFARLHLEALQTAAAEINATLDAVWEDAAT" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 549977..551659 /locus_tag="Silicibacter_560" /function="COG: Arylsulfatase A and related enzymes" /translation="MPPDLTYRRFGTRNKACAMNILFIMFDQLRFDYLSCAGHPHLKT PHIDRLAERGVRFTNAYVQSPICGAARMSCYTGRYVSSHGAQWNNSPLRVGEWTMGDH LRMAGMGCWLIGKTHMNADSEGMARLGLSPDSVIGARQAECGFDVWIRDDGLWAEGPD GFYDQKRSPYNEYLKSKGYAGHNPWHDFANAGLEGEEMASGWFMANAQKAANIAEEDS ETPWLTTKTIEFIEQAEGPWCAHVSYIKPHWPYIVPAPYHDMYGPEHVLPAVKDPAER EDPHPVYGAFMGNAIGQAFSREEVRQAAIPAYMGLIKQCDDQMGRLFEYLEDTGRMDD TMIVITSDHGDYLGDHWLGEKDLFHEPSVKVPMIIYDPRPDADATRGTTCDALVENID LLPTFVEAAGGEVADHILEGRALTPWLHGQTPEVWRDYAISEYDYSGTPMSVKLGSAP RDARLFMVTDTRWKFMHAEGGLPPMLFDLENDPQEFHDLGRSPDHTEVIDMMYARLGQ WGRRMSQRITRSDAQIIAGRGASRGKGILLGVYEPEDVPAELTVKYRGKPPT" /product="Steryl-sulfatase precursor" /transl_table=11 /EC_number="3.1.6.2" /note=", Steryl-sulfatase precursor (EC 3.1.6.2) (Steroid sulfatase) (Steryl- sulfate sulfohydrolase) (Arylsulfatase C) (ASC)., Sulfatase, Sulfatase" /note="High confidence in function and specificity" CDS 551666..551767 /locus_tag="Silicibacter_561" /translation="MRPVLSRALTVSTQLRYVAATMSRASQEDRDVA" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 551988..553448 /locus_tag="Silicibacter_562" /function="COG: Uncharacterized conserved protein" /translation="MLLVENFDLRATMEQPTSFDEMWGTSGSLREPYREFHDWFGSED PARLRKKQRDADKLFRLTGITFNVYGKAEAEERLIPFDIIPRIISGSEWARLSRGIEQ RVRAINAFLYDIYHKQEIVKAGRIPKEMISRNDAFLPHMIGVEPPGGVYTHIVGIDLV RTGPGEFYVLEDNARTPSGVSYMLENRETMLQMFPELFSQNRVQPVSNYPTDLRRSLA ASAPQSCTGKPVVAVLTPGIYNSAYFEHAFLADKMGVELVEGQDLRVIDGRVAMRTTR GYKPIDVLYRRVDDEFLDPLNFNPESALGVPGIMDVYRAGNITIANAPGTGIADDKAI YSYMPEIVEFYTGERPLLQNVQTWRCSEPDALAYVLDNLEDLVVKEVHGSGGYGMLIG PTASKKDLAAFRRKLKARPGNYIAQPTLALSTVPIFSRAGLSPRHVDLRPFVLCSPNK VHITPGGLTRVALKKGSLVVNSSQGGGTKDTWVLED" /product="Hypothetical protein Mb2434c." /transl_table=11 /note=", Protein of unknown function DUF404, Domain of unknown function (DUF404)" /note="Conserved hypothetical protein" CDS 553453..554394 /locus_tag="Silicibacter_563" /function="COG: Uncharacterized protein conserved in bacteria" /translation="MLGKTANGLFWMSRYLERAENTARLIETGQRIALTRLGSAEDEW VSILQSAGSLGGFREAYDTHGQDAAVDWMLRGKDNPSSIMSSIASARQNARLVRAAIT GEVWEAINATYMTASDLLARKVSARDLPDVLASIRQHTALMRGMVHGTMLRNDIYDFL RIGTFLERADNTARILDVKYYVLLPSVSAVGSSIDNVQWESILRSVSARGGFRMEYGA DGGPQEIAHFLIFDKRMPRSLAFCVSKIKDNLRYLNAGQPTPSPSQELVTHLENTYLS HGIEEVFDYGLHEFIEKMLELLLELAHQIQLDYRFYE" /product="Hypothetical protein Mb2597." /transl_table=11 /note=", Bacterial protein of unknown function DUF403, Bacterial domain of unknown function (DUF403)" /note="Conserved hypothetical protein" CDS 554398..555195 /locus_tag="Silicibacter_564" /function="COG: Transglutaminase-like enzymes, putative cysteine proteases" /translation="MRLTIHHTTRYRFDEPVSFGLQQLRKTPKTNTNQQVVEWQTRII GGQKEVSFDDHHHNVTELISFEPGVTELELVSEGVVELTDTHGVVGRHRGPSPLWLYA RPTVLTEARAGVRELIRDLDDSNPVDMLHQLSARIREAITYQIGVSELGWSAEDAIQS AHGVCQDHAHVFIACARKLGLPARYVSGYLMLDDRTTQDAMHAWAEAHVEGLGWVGFD VSNGISPDARYVRVATGLDYSDAAPVSGTRIGGAGEALDVQIEVAQQ" /product="Hypothetical protein ML0607." /transl_table=11 /note=", Transglutaminase-like, Transglutaminase-like superfamily" /note="Conserved hypothetical protein" CDS 555203..555937 /locus_tag="Silicibacter_565" /function="COG: Predicted proteasome-type protease" /translation="MTYCVGMMLDAGLVFMSDTRTNAGLDNISTFKKMTSWEAPGERA ITLLSSGNLATTQAVVSLLEERPHAHGERDPSILGVPSMFQAARLVADTLREVIAQHD AAGQQADSAFGATLILGGQIKGGPPRLFMIYPEGNFIEASADTPFFQIGETKYGRPIL VRAYDPKMSFEAAIKLLLVSFDSTVKANLSVGAPFDFHFYRKDSLQLDTTGRIDADNP YLQLISQGWGDALKNALESLPDFALE" /product="conserved hypothetical protein" /transl_table=11 /note=", 20S proteasome, A and B subunits" /note="Hypothetical protein" CDS 557128..557436 /locus_tag="Silicibacter_567" /translation="MTHPSEPEDITEPTQLRFLRRLVTTLTVIMVGGVLVVIALLVIR LSDDTHAPQVPADISLPEGATARAVTFGSGWLAVVTTEDQILILDSETGALRQQIQID " /product="conserved domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1407 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(556092..557129) /locus_tag="Silicibacter_566" /function="COG: Pseudouridylate synthases, 23S RNA-specific" /gene="rluD" /transl_table=11 /note="identified by match to putative ortholog SPO1408 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="ribosomal large subunit pseudouridine synthase D" /translation="MASRRIEFVIADNPPKRLDKAIARDVPEEANLSRTRLARLIESG GVFVDGARANDAKSRVAEGALIVITVEEAEDSHIGPEDIPLDVIHEDADLIVINKPAG MVVHPAPGSPSGTLVNALLHHCGADLSGVGGVKRPGIVHRIDKETSGLLVVAKSDAAH QGLAAQFERHTVERYYQAVCYGVPDGNDPRLRGVRGTSFEPGNILKITTQLARHKTDR QRQAVLFEGGRHAVTRARIIEAFGAPAAASLVECWLETGRTHQIRVHMAHAGHGLLGD PTYGGKRKISPKALSAAGLAAINSFQRQALHAAVLGFEHPVSGEMMRFEAPLPEDMQA LIAALRIPASV" /EC_number="4.2.1.70" tRNA complement(557560..557633) /locus_tag="Silicibacter_13" /gene="Silicibacter_13" /description="RNA" /note="Created by Search for RNAs Autoannotator" CDS 557769..558149 /locus_tag="Silicibacter_568" /translation="MEPGGSLFCAAKHLRQRDGDSLVLGRVALWIYAAALKCTDEADI LHFRGLQASTLAHRDPKELDMGINTERDIEANMQIGPTDVGMVRIFIEADGLEIPMDF DPEEAEEIADEIRAAAQAARAVSS" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS 558404..559516 /locus_tag="Silicibacter_569" /translation="MYHFTTPPLGPVVILPSAIATANGPQAAAVSISDSESLTTNQLH NQLSEARRARDKMIEQVSRPPEPGWKSAMHQISDTVDHMEKVLDLLRSHVSALPASPA TGSDPLAVYPSGVAMQQSGRTPDSPPSVAEAPAAPTAASDPAAPPAAGPQDPNVSAQA LASSQPRVIYVMNDGVVIIGLPQTEADATTGTAEAASPASRDNSTDAAGRADPLQPPQ SGAPMTANTVISLPLTEDQKRASADLIALAKKAYAYQAQPRDAQAAELISDENVGLTG ALSESPELSAPDRPERAPVPRILTAELAQPDAGSQRPAANDDPLIAAAAPYARDPQRE AAQAQEEQQILALQLDGHHDIIYIVPPAQAAIDLTA" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(559599..560210) /locus_tag="Silicibacter_570" /function="COG: Uncharacterized protein conserved in bacteria" /translation="MTEQHKITEGFDTQAPDRSEAEGRPAEEADQGEVGTGDMDADAA TLALMQPGQRLARGVSRYLRSMGFAALEEFVPQRGLRVDVMALGPKGELWVIECKSSR ADFQSDGKWQGYLEWCDRYFWAVDVEFPTELLPEGTGLILADAYDAEVVRMGPEQKVA PARRKKMTQKFAMDAARRLQRLRDPRPGREAFAFAVSEEDCDS" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1766 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(560552..560872) /locus_tag="Silicibacter_571" /translation="MPELIKLYIKSALWGLVLAALFVAILLWFNIANLGALVFGSDSG VIAVLALWISNAVVFGGVQFGFKIMAMAERDDTPRGGTWVGPEMQPVPIPAKASKPQR RTLR" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1765 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 561066..562616 /locus_tag="Silicibacter_572" /function="COG: Adenylate cyclase, family 3 (some proteins contain HAMP domain)" /gene="cyaC" /transl_table=11 /note=", Guanylate cyclase, Adenylate and Guanylate cyclase catalytic domain" /note="High confidence in function and specificity" /product="putative adenylate/guanylate cyclase" /translation="MKITRRIGRFLVNQPHLINWGIGAAIVALPVVVWMDLMAITDQS LRRQGQALDAVLDTVRSYYARNVIGRLNPDGSTFATHDYHDRDGAIPIPATMAIELGD QIGTHGLNVQYRFASDYPFHGRETTELTWAEDHALSRFREGVDDHYLFYRGEESGLLT HAVTMITPVVMEEACVACHNNHSDSPKTDWAVGDIRGVQSYSIVQPVAVSLFSFSHLL AYMVVAGGFGAFFALHQLRLAQRFRKISEELSSNNEFLAGISMKISRYLSPQVYRSIF SGEKDASISTERKKLTVFFSDIKDFTQTAETLQPEELTALLNEYFTEMSAIAAKHGAT IDKFIGDAIVAFFGDPETLGTAEDARACVRMALEMQERLRELEKEWRARGIDRPFRAR IGINTGYCNVGNFGSEERMDYTIIGAEANLAARLEAAAEPGGIVMSHETYAHVRDFVA ATPMPPMQFKGITRDVHPYAIAPGQSGNLPPTETSMDGKSLTVHLERLDDTTRAQLEA ILGKPLKG" /EC_number="4.6.1.1" CDS complement(562731..564380) /locus_tag="Silicibacter_573" /function="COG: Choline-glycine betaine transporter" /gene="betT" /translation="MTDQTTETPDGIPSPDGAAHIIDTDYEIGQDNVEGSVGPFGFDI HNPVFAISGIAVVAFVFYTLALPEQAGNVFSWLFSAVTKGFDWFFLGAANIFVIFCLF LIVTPFGNVRLGGTEAEPDYSYIGWFAMLFAAGMGIGLMFYGVSEPLSHFASSIGGTA SEGGVRTDWAPLGAAGGNEAEAVRLGMAATIFHWGLHPWAIYAVVALALALFSYNKGL PLTIRSAFYPIFGDAVWGWVGHVIDILAVFATLFGLATSLGFGATQANAGLNELFGIS IGSTTEVILISAITAIALVSVLRGLDGGVKILSEINMGLAFVLLVFVLLVGPTVFLLS LFWDSLMAYFQYLPALSNPVGREDVNFMQGWTSFYWAWWISWSPFVGMFIARVSRGRT VREFIICVLLIPSMVCVLWMSVFGGTAIHQVLSDGYTVAQDAALELKLFKMLDVMPLA GITSLVGIVLVIVFFVTSSDSGSLVIDTITAGGKVDAPVPQRAFWCVFEGAVAIVLLL SAGGLQSLQSMVISTGLPFTVVLLVMCYAILRGLMSERKAT" /product="Glycine betaine transporter opuD." /transl_table=11 /note=", BCCT transporter, BCCT family transporter, bcct: choline/carnitine/betaine transport" /note="Conserved hypothetical protein" CDS complement(564422..564838) /locus_tag="Silicibacter_574" /translation="MFQKIVVPVDLAHEAALQRALDVAAAMAKTHSADVCYVGVASAN PGAVARSPEEYASKLEQFAQSQAAQHGITASAHAIMSHDPAVDLNKALERAISDLKAD LVVMATHVPNISDYIWAGHGAHVAAHSAASVLLVRD" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(565092..565574) /locus_tag="Silicibacter_575" /function="COG: Transcription termination factor" /gene="nusB" /translation="MTSKDAPKPGKNKTQARSAARLYAVQALFQMEQSDQSTNKVIVE FEDHRFGATYEGDEYAEGDTKLFRQLVNDAVNHQAKIDQMTDRALVAKWPIARIDPTL RALFRAAGAEFVESDTPVKVVINEYVDIARAFFPEGREASFVNAVLDHMAREAKPEAF " /product="transcription antitermination factor NusB" /transl_table=11 /note="identified by match to putative ortholog SPO1763 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(565598..566122) /locus_tag="Silicibacter_576" /function="COG: Riboflavin synthase beta-chain" /gene="ribH-2" /transl_table=11 /note="identified by match to putative ortholog SPO1762 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="riboflavin synthase, beta subunit" /translation="MAGQESHYILPRPEFDKPVKLLIVVSPYYKDIADNMVAGAVAEI EAVGGTYEVVEVPGALEIPTAIGISDRASNFDGYVALGCVIRGETTHYDTVCNDSSRA IQLLGLQGLCIGNGILTVENRKQAEVRADPEDQNKGGGAAAAALHLIALARKWGAQTK GVGFKPASDSYRLA" /EC_number="2.5.1.9" CDS complement(566137..567402) /locus_tag="Silicibacter_577" /function="COG: 3,4-dihydroxy-2-butanone 4-phosphate synthase" /translation="MRAARERAYAVCGAGICTARGLSRQGRQRRGQGLLDRAAPRAKG LLHMSYETPGPVESELRDAISPIEEIIDAARAGKMYILVDHEDRENEGDLIIPAEFAD ADAINFMATYGRGLICLPMTAERIDRLGLPMMAVNNSSRHETAFTVSIEAREGVDTGI SAADRALTVATAINEQNTMAAIATPGHVFPLRAKRGGVLVRAGHTEASVDISRIAGCH PSAVICEIMKDDGTMARLPDLVEFAKTHDMKIGTISDLIAYRAKNDNLVDETARSTVT SEYGGDWEMRIFTDQTHDVEHVVLIKGDITTPEPVLTRTHALHEASDLLGLGPKPAGE LPRAMELIADEGRGIVCLFRQPRNALYASDEEGVRTIKQTGLGAQILNKLGVEELILL TDSPQTKYVGLDAYGLSIVGTRPILSRDS" /product="3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1761 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(567555..568157) /locus_tag="Silicibacter_578" /translation="MGGRPTLGSVPGLGHNGGPSLEPGALWRTHAWRSAQKKLMPNTL PKLVLQMRLKRAAELGMDYKTYAKVRQTSGQDVLGLLFSSNALRLLKDPRLPEVERAR LAHLKRAERLALTYPPLRPSEVARVNPEIDAADTAPVFTEGWTEMRAKLQGVMRQRGL SGASVLVIGDAPLENEWAAAGRAAAYLSAAEYFGASARRP" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1760 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(568157..568762) /locus_tag="Silicibacter_579" /function="COG: Riboflavin synthase alpha chain" /gene="ribE" /transl_table=11 /note="identified by match to putative ortholog SPO1759 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="riboflavin synthase, alpha subunit" /translation="MFTGIITDVGTITELEQAGDLRARIQTAYDTSSIDMGASIASDG VCLTVVALGPDWYDVQISAETTSKTNIDARGTHKGWFVGKRVNLERALKVGDELGGHI VSGHVDGVAEVVAMRDEGDSTRVTLRAPKELARFIAPKGSVALNGTSLTVNEVEGCDF GINFIPHTKEVTTWGDVAVGDLINLEIDTLARYVARLQESL" /EC_number="2.5.1.9" CDS 569026..570330 /locus_tag="Silicibacter_580" /function="COG: Capsule polysaccharide export protein" /gene="wcbO" /translation="MPMRSKNGSADARSFLFLQGPHGPFFAALGRMLRAAGCSVHRVG FNTGDRVFWPDRQSYIAYRDTPEAWPERFGALLDQRAITDIVLYGDTRPIHADAIAIA KARGITVHTFEEGYLRPYWVTYERDGTNGNSRLMQMPVPEMEQALANSDLEMPMPPAH WGDTRQHVIYGALYHWFVMFLNRGYRNFRPHRALPVTKEFQLYLNRLLMMPLHALHRR LATMRIQRGGFPYHLALLQLEHDSAFQAHSPFSTITEFLEVVVAGFAEGAPRHHHLVF KAHPLEDGRAPIRRALKRLAAEHGVEGRVHYVRGGKLAALLNEARTAVTVNSTAGQQV LWRGLPLKVFGRAVYDKPEFSSTQSLPEFFAAPARPDGRAYKQYRRYLLETSQFPGGF YSRSGRRQLLRQVVDMMLAADDPYDALLRGTAAPRQHLRVVS" /product="Capsule polysaccharide modification protein lipB." /transl_table=11 /note=", Capsule polysaccharide biosynthesis, Capsule polysaccharide biosynthesis protein" /note="Conserved hypothetical protein" CDS 570436..571563 /locus_tag="Silicibacter_581" /function="COG: Periplasmic protein involved in polysaccharide export" /translation="MTLRWARPVALLAAVALAASCGLPKVGPNKREIFAGSVQKQGDA FVVSVNDRVARATAVVPALGFSDAFTKASVLTSDIIRPGDILGLTIWENVDDGLLASA GANATLLEEVQVDGAGFIFVPYAGRVRASGNTPEQLREAITKKLEDQTPDPQVQVRRL AGDGATVSLTGAVGAQGVYPIERPTRTLATMLAQAGGVAIEPEIAQVSVTRQGQTGTI WFEDLYDHPQMDIALRNGDKILVEGDTRSFTALGATAAQARVPFESQNLSALEALAQV GGLIATASDPTGVFVFRNEPEAISNQVLGRDDLIGAQRMIYVLNLTQPNGLFIARDFV IRDGDTIYVTEAPYAQWTKTLSLLTSPLSTAASVETLFGGS" /product="polysaccharide biosynthesis/export protein" /transl_table=11 /note="identified by match to putative ortholog SPO1756 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 571570..573609 /locus_tag="Silicibacter_582" /function="COG: Capsule polysaccharide export protein" /gene="kpsC" /translation="MMQGPLPHLDETRTGSKRSRLFVYNGGFLTQSRVRRILDLAGYD IRLGLPKEGDLVGIWGNSPTAHRGRKIAQEHNAPLVRIEDAFLRSVHPGRDGEPPMGL LIDRAGVHFDPALPSDLITLLKEHPLDDSALMKRARDAMARLQDAHLSKYNAFHPDVP PPEPGYVLVVDQLRDDASVKASIPFPGADRGRFQEMLAFAREENPGARVLIKTHPETT KGHRAGYFDARDTNDQVELFDAPVSPHLLLEGAVGVYTVSSQLGFEAILSGHRPRIFG QPFYAGWGLTQDEFPPAGRHRRLTRAQLFAAAMILFPTWYDPHHDRLCELEDVIDSLE AQVRAWREDRAGWAASEMRLWKRAPLQQFFGRHKRMSFTEKTATAKKSGKNWMVWASK ATKDHAGAHHLEDGFLRSRGLGAELVPPLSLVLDRQGIYYDPTRHSDLDDLIRERVTL SPQQERRIEALVMRLIKHEVTKYNLDGALPDLPKGHRVLVPGQVEDDASLRLGAGKIN TNMKLLQAVRAARPNAVVIYKPHPDVEAGLRKGRISHAEAWADVVAEHANPAALIDSV DEVWTMTSLLGFEALLRRVPVTCVGLPFYAGWGLTRDRLQAPHWRDARPGILGLAHAA LIDYPRYFDPVSKLPCAPEVAVDRLIAGELPARSPLNSSLSKLQGLFASFAPLWR" /product="capsular polysaccharide export protein KpsC" /transl_table=11 /note="identified by match to putative ortholog SPO1755 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(573676..574752) /locus_tag="Silicibacter_583" /function="COG: Pyrimidine reductase, riboflavin biosynthesis" /gene="ribD" /transl_table=11 /note="identified by match to putative ortholog SPO1754 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="riboflavin biosynthesis protein RibD" /translation="MGLALSLGRRGQGRTWPNPAVGCVIVQKGRVVGRGWTQPGGRPH AEPMALAQAGAAARGATAYVSLEPCAHHGKTPPCAQALIEAGVARVVAAIEDSDPRVS GQGFEMLRAAGISVTTGVRAEEAGFDHEGFFLKTEQGRPFVTLKLAASFDGRIATGSG QSQWITGPEARRVVHAMRARHDAVMVGAGTARADDPSLTVRDLGIDQQPARVVVSRHL DLPLISKLARSAAEVPLYLCHGTGADTERLRAWDGLGAHLLPCNALGTQLDPHDVLQQ LGSVGLTRVFCEGGGALAASLLAHDLVDELVGFSAGLTIGAEGLPSIGALGIGHLSEA PRFDLHETRPIGADILHRWRRPQN" /EC_number="3.5.4.26" CDS complement(574828..575295) /locus_tag="Silicibacter_584" /function="COG: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains" /translation="MRCPFCGNVDTQVKDSRPAEDHVSIRRRRFCPACGGRFTTYERV QLRDLVVIKTNGKREDFDRDKLERSIRISMQKRPVDPERIDQMISGIVRRLESMGETD IPSKKIGEIVMEALARIDTVAYVRFASVYKNFQAADDFEDFVHELRPPAPPES" /product="riboflavin biosynthesis protein RibX" /transl_table=11 /note="identified by match to putative ortholog SPO1753 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(575441..575869) /locus_tag="Silicibacter_585" /function="COG: Uncharacterized conserved protein" /translation="MSNIQQRTFTLSTHGQGLYEITDEIRSFVRSSGAVQALLTLYVR HTSCSLLIQENADPEVQGDLKAYFARLVPPTTDPQMSYLRHTYEGPDDMPAHIKAAMM PVSLSIPVSSAEMVLGTWQGIYLFEHRDAPHQRQIVAHLA" /product="conserved hypothetical protein TIGR00149" /transl_table=11 /note="identified by match to putative ortholog SPO1752 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(575874..576332) /locus_tag="Silicibacter_586" /translation="MRQSSHSMTRRLMLPALAATAALAGCADIQSTGPQADYFSSRAL ARIYALEDGRFEVVPEIGAEGAAYWCAASEYARRALGAGWSQDIYVAKGRAPSTVSGR IDAVTFSLSPVPSVTDKSPFIKTFGFKPGDNFSVSTGESLCRDIEPVFFF" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1751 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(576463..576771) /locus_tag="Silicibacter_587" /translation="MSGTNEMKNALSELDEKLNALDTMTEVNSFLVSALREHEQELIR MSPQETRDMLRQKARVRYRADGGETPNPQALDMLEKTLGNGHTAEIIKFPSGGRAGRA " /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(576987..577457) /locus_tag="Silicibacter_588" /translation="MTSIFKIAPIFAVFIAAPALSCPQGATPLVSCSLKSGSAYLETC RLGNFATYAYGKTGQRPDLALARPVQEVEMTPWPGVGRSIWEDFQFRNGDVSYRVFYS IDRFSEGEPALTAGVMVEKGEETLAELDCDPGTIDAGYPLPLWDAQELAAQARN" /product="hypothetical protein predicted by Glimmer/Critica" /transl_table=11 /note="Hypothetical protein" CDS complement(577742..579736) /locus_tag="Silicibacter_589" /function="COG: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)" /gene="rpoD" /translation="MAAKDTDDRKPDDQDAEISLDMSQAQVKKMIAEAREKGYITYDQ LNQVLPPDQVSSEQIEDVMSMLSEMGINIIEDEEAEEEENKGTTELVTTESNREVAVA GAATEKLDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNTMILGLCESPLTFQ AITIWHDELLSEDILLRDVIDLEATFGNQMDEDGDVAEPVVDPSAVSGAAKPEKDSGP ELDADGNPILNNDDDDDDDDDQANMSLAAMEAALKDRVLETLERISSDFAMLSEMQDL RISATLNEDGSFSADDEAKYQQLRSEIVELVNGLHLHNNRIEALIDQLYGINRRVMQI DSAMVKLADQARINRKEFVEAYRGRELDPNWLSEMSEKPGRGWQMFIERSTEKVEELR ADMAQVGQYVGLDISEFRRIVQQVQKGEKEARQAKKEMVEANLRLVISIAKKYTNRGL QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI ETINKLVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEE DSQLGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREERVLRMRFGIGMNTDHTL EEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDQ" /product="RNA polymerase sigma-70 factor RpoD" /transl_table=11 /note="identified by match to putative ortholog SPO1750 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(579902..581911) /locus_tag="Silicibacter_590" /function="COG: DNA primase (bacterial type)" /gene="dnaG" /transl_table=11 /note="identified by match to putative ortholog SPO1749 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="DNA primase" /translation="MSLPPGFLDELRTRISLSDVVGRKVMWDQRKSQPGKGDMWSPCP FHHEKTASFHVDDRKGFYYCFGCHAKGDALKFVQETENVSFMEAVEILAGEAGLEMPK RDPKAAEKQDRRTQLAEVMEQAVKYFRLQLKTQAASEARAYLARRGLDAAALDRWEIG FAPDGWQNLWDALKGKDIADDLILGAGLAKPSNKGKKPYDVFRNRIMFPIRNARGRAI AFGGRAMDPNDNAKYLNSPETELFDKGRNLYNHGPARAASGRGSTLIVAEGYMDVIAL SEAGFQSAVAPLGTAVTDNQLHLLWRMSDEPVIALDGDTAGLRAAMRLIDMALPLLEA GKSLRFAIMPEGKDPDDLIRAEGPEAVQAVLDQAIPMVQLLWRRETEGRVFDSPERKA ALDKSLREKIKLIRDPSIRLHYANDIKELRFQLFRGQRGGGGQGGTGYGQRYGGFKPG SRMQGGFRDGARMPWGAPPPPRSTTRASMVASSEEQDFARVREAVILATAITTPTVIP EFEINLERMQCQDMEHAHLRDLVLRYGIEAPERLRDEIAYALGPDALENLLSLRHVAI SPCVRKPGDLDMASLTLAEEFAKLESIAGLNAELAEAEEDLDGLADEALTWRLRQAAE ARNRAVRSENEDKATYDVGENGARLNRDERDAFGDLLKRIGFNSK" /EC_number="2.7.7.-" CDS complement(581977..582333) /locus_tag="Silicibacter_591" /translation="MIRNIFAAAFVAAPLFASPASADDYGKEDSCKYQGQVMAAVQAA RLDRVPEAKVEETIRASNPEWPENFSNAIPQLTQHVYQMKRRDLKNIDLGEVFETQCV ENWDQIQEMKKNLSGG" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1748 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(582372..582953) /locus_tag="Silicibacter_592" /function="COG: Glycine cleavage system T protein (aminomethyltransferase)" /translation="MTLREGAFVAEIKMQLAAKSPCEGLLPLTIGDVTLTEDMPAAMT LIAPYKGRKDALSKALNAAHGMAFPAPNRATGKVGGRAIWFGRAQALLIGPAADPSLA AHAALTDLSDGWAVVRLEGDQAENVLARLIPIDLRATVFKRGHTARTEIKHMMGSITR IGPKAFQIMVFRSFSETLIHDLKRAMEAVAARG" /product="sarcosine oxidase, gamma subunit family" /transl_table=11 /note="identified by match to putative ortholog SPO1747 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(582922..585867) /locus_tag="Silicibacter_593" /function="COG: Uncharacterized NAD(FAD)-dependent dehydrogenases" /translation="MRVSGKGLLSGNRTVNFSFNGKAYMGLEGDTLASALLANDVHLV GRSFKYHRPRGILTAGSEEPNALVSVGRGAARDPNIRATQQEIFEGLAAQSQNCWPSV ERDVMAVNDLAAPFLGAGFYYKTFMWPAPLWEKFYEPIIRRAAGLGALSGAANKDPYE KAFAFCDLLVIGSGPAGLMAALTAGRAGADVILAEDDSRMGGRLLAEIEEIDGKPAHV WVAEVLAELEAMENVRLMPRTAVTGVYDQGTYSALERVSHHLPPSQSLKTAHRPRECF WRIAAKAAVLAAGAIERPIAFRNNDRPGIMMAGAVRAYLNRWGVAPGERITVFANNDD AHRTARDLVAEGVHVTAVVDSRHDAPDSGEFPVIKGAVICDSAGRQRLESVTIRSVNG EEKLQTDCLAVSGGWNPSVHLTCHMGARPEWNRELTAFLPKPDAVPGMVVAGAANGVF STHGALRDGAEAAATALGKIGRSAAAVAVPEASDAPYQISPLWAVPGKGRAWLDFQND VTVKDVAQAARENFRSVEHMKRYTTQGMATDQGKNSNVAALAVLADATGRSIPETGVT TFRPPFVPTSIAAMGAGAEDQGFLPQRFLTSHKASLARGAANIEVGLWYRASYFAKDG ESTWRQSCDREVTMVRNAVGVCDVSTLGKIDIQGPDAAELLDLVYTNLFSTLKLGRVR YGLMLREDGFVMDDGTTARLGENHYVMTTTTAAAGQVMAHLEYLTQVVRPDLDVRFTS VTDQWAQFSVAGPKARDLIDALVDEDVNGETFPFMACGVITVLGVAGRLFRISFSGEH AYEIAVPARYGEALYERLLERAEALGGGPYGMEALNVLRIEKGFITHAEINGTVTAFD LGMQGLVSKNKSCWGKALSERDGLMHDDRMRLVGLKPVGAAQEMSAGAHLFDPDATVE RVNDLGYVTSVGFSPTLGHMIGLAMLSGGPDRMGDTIRLVDHTRGIDTLCEVVNPVFF DPEGGRVRG" /product="sarcosine oxidase, alpha subunit family" /transl_table=11 /note="identified by match to putative ortholog SPO1746 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(586209..587513) /locus_tag="Silicibacter_594" /function="COG: Glycine/D-amino acid oxidases (deaminating)" /translation="MLHIVETPFEEWAMGFSEKFSGWRVLKEGLTGNKGWTAHWRDPE PKREYDVVIVGGGGHGLATAYYLAKTHGLRNIAVLEKGYLGGGNVGRNTTIVRANYYL PGNSEFYSHSLKLWEGMEQDLNYNAMMSQRGILNVFHNDGQRDAAVRRANSIINQGDD AEILYRDQLKKLVPFLNYDNNRFPIMGALLQRRAGTARHDAVAWGFARGADQYGVDLI QNCEVTGIDVDGGKVTGVQTVRGPIKAKKVALAAAGRSSQVAAMAGLTLPIESHVLQA FVSEGLKPVIDHVITFAAGHLYISQSDKGGLVFGSYLDFYSSYAARGNLAMQEHTMEA ITAMVPAVTKARLLRSWGGIMDMTPDGSPIIDVTPIDGLYLNAGWCYGGFKATPASGD CFAHLIATGRPHEAATRFRLDRFRSGFGLMDEEGTGAQHNLH" /product="sarcosine oxidase, beta subunit family" /transl_table=11 /note="identified by match to putative ortholog SPO1744 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 587651..588337 /locus_tag="Silicibacter_595" /gene="tetR" /translation="MQLPSVFAVLSRLDCHYRLMSVIECMRTRLSRSARRAEILGNAQ KLIAARGFSGTEMEDIRLASGISRGGLYHHFANKHAVLDALVAEEVRRLADQLKAAQG SPIPALLRVGSSDLGNDPGLVSHLHTPEEKRAYLSSLEQAIPAELGPVLHERLRGHTA EGAAPAHVAELFLTITAHINRRRILNEWPPEEAAGFTATALRALLPLLTSQAELQPVI AELKRVAATS" /product="transcriptional regulator, TetR family" /transl_table=11 /note=", Homeodomain-like, Bacterial regulatory proteins, tetR family" /note="Hypothetical protein" CDS 588211..589101 /locus_tag="Silicibacter_596" /function="COG: Predicted metal-dependent membrane protease" /translation="MAPRRGSGIYRDSASGSVALADIASGAPAGHRRTEAGGGDILML IGFLALTFGISLLSFACVVAIPAARTPESAAGLPFWLVMVWGPSLAAILISAQNGQLP ALLLHSIEFSTVPPVVWILVLAPLLMLLMLRPFAPEQRRPVGPGVIAAMVGLNLILGP LGEELGWRGIMQADLNPRIGWLSASLLIGVVWLIWHLPLWTIDTPHSQITLPLFAAHC LLYAVIIGAAYTLSGGSILPAILIHLTVNLASNFATFAGFRDPNAWFKASLWPYLALA AGAVALVYAHLGQFGLWPQP" /product="CAAX amino terminal protease family protein" /transl_table=11 /note=", Abortive infection protein" /note="Hypothetical protein" CDS complement(589208..590638) /locus_tag="Silicibacter_597" /function="COG: Glutamate dehydrogenase/leucine dehydrogenase" /translation="MSNLKEPSFRESVDLMFNRAVALMDLPPGLEEKIRVCNATYTVR FGVRLRGQIHTFTGYRSVHSEHMEPVKGGIRYAMGVNQDEVEALAALMTYKCALVEAP FGGSKGGLRIDPRQYDEHELELITRRFAYELAKRDLINPSQNVPAPDMGTGEREMAWM ADQYARMNTTDINARACVTGKPLNAGGIAGRVEATGRGVQYALQEFFRYEEDKAKAGL SGTLDGKRVIVQGLGNVGYHAAKFLSEEDGCKIVAVIERDGGLYDENGLDIEDLRAWI EKHDGVDGYPSGRYIKNGAKYLEEDCDILIPAALEGVINLSNAENVKAKLIIEAANGP VTAGADEILRKKGTVIIPDMYANAGGVTVSYFEWVKNLSHIRFGRMQRRQEEARHQLV VDQLEMLSESMGKTWSLDPKFKEKYLRGAGELELVRSGLDDTMRIAYQSMRQVWHERD DVSDLRTAAYLVSIDKVASSYRAKGL" /product="glutamate dehydrogenase" /transl_table=11 /EC_number="1.4.1.3" /note="identified by match to putative ortholog SPO1743 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 591025..592773 /locus_tag="Silicibacter_598" /function="COG: Flp pilus assembly protein TadG" /translation="MKVNFWTSSALTGALGRRAIVDRMRQFRRDESGVLAKPMIMIVV LMFMIGGLGMDMVRLERDRTKLQYTLDRAVLAAADLDQPLDPEAVVLDYMSKSGLGDY TTVVVPEVSPTAKRVKASVDTNFTASWMNNVFYDDYIRNPDTYQLEPITLPLLASSTA VESIGNVEISLVLDVSGSMRSNDRLVNLKRAAKEFVQTMDDNTEDGKMSISIVPYSTQ VSMPEAFLDELNVSSEHDYSHCINFSGSDFNNAGISTTQAYERTMHFTVWNSGDYRSR TRLVRQPTCAAHSDNPERTALLLSDNVTQLQNYIDAFVPSENTSIDLGMKWGSALLDP SVQPVIASLADDANPNQSIASRFANRPVPYTDTETLKVIVMMTDGQNTSQYYLRNSYR EGDSPVWYNAQERVYSTYDPNRGSKPYYWDNLQRWADHPYGNGTYEETYCTGTLYYGN CYYGSWQTRTVDEPGTAVQLSYPDLFADTSLRYLRDRLFGDWMSNANYYWFSGLFSSV GSTTKDARTLDICEAAKAKGVVVFTIGFEAPSRGQEVLQACASSASHYYDVDGLEISD AFASIASAIRQLRLTE" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1742 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 592770..593318 /locus_tag="Silicibacter_599" /function="COG: Flp pilus assembly protein TadG" /translation="MIHLRFISKPLRQFRRDEEGNATVEFAMLFPLMLMVLFASVELG MITFRQIMLDRAMDMTVRDIRLGTGGDMQHDDIRDTICARTSFIDQASCDVSLKLEMV RLDPFNWAGIPPEPDCVDSVEEVDPVLTFTNGASNDLMYLRACVSIEALFPHWGLGKA IRKDDDGRLNLFASSAFVQEPQ" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1741 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 593322..593927 /locus_tag="Silicibacter_600" /translation="MFRKIAHKFRAFRRDEEGNIAVEAALYLPLLLFVFAATYTLFDL FRQETVNTKAAYTVSDLISRETTALNDEYINSIYTLGKLMARAGSDMSMRISVIRWDA ADDRYYVDWSVERGNQLDIWTDATVTAINDKLPTMPDQERVIVVETWNNVDPAFKIGI GQREIYNLIFTRPRFASLVAFEGTVVSDGTVHDDDVTDTGS" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1740 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(594037..594471) /locus_tag="Silicibacter_601" /translation="MTENLPTIAQAKAMAREWRAARQQAGESLRHGAALEHVARQLGF RDWNLCAAMLSQAEAQRYQPGQVVRGRYLSQPFSARVLRATAVEGRVGWVRLELDLEV PVDVVTSQRFSSFRRRVNGVIGPEGFSREQTSDGQPHLVIDP" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO3390 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(594468..595850) /locus_tag="Silicibacter_602" /translation="MSTSPPNRFLTARLGPVYAKTALPIIFVMGMNGFLTVADALFLG HFVGPEALAAVTLMFPGYMLVVALATLVASGMSSRLARHLGAGDTEAAQADFAAAHGL ALSVAVGLMAAFALWGSAVAHAAAGGDRLLADMGHTYLRITVGCTPLLFVLSVNSDAL RNEGRAGLMALMSLVVSLSNIAFNYLLIAQAGLGVAGSALGTALAQVLALSLIVAFRL RGDTVLRPSCLWRQSLWGGWGRMLALGAPQSLNFIGIALGSAVIMFALQWVDVSDYAT TVSAYGVITRLLTFTFLPLLGLSHAMQSITGNLYGAGQILRVGQSLRFAVVSALIYCA VMQAGLTWGAAWIAAWFVDDQGVIEDVARILPILGALFVLAGPLMMVAMHFQAIGDAP RAALLGLSKPYLFSIPLTFMLAALWGEPGIWLAAPVAEAGLLVLTGLVLLDLRRRRDQ VTSKVQERRA" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 596156..598870 /locus_tag="Silicibacter_603" /function="COG: Ammonia permease" /translation="MSDLDASWILVCALLVLLLQAGFLCLEAGTVRAKNSANVALKNL SDVCIVSTCFWLVGFGLMFGESFNGLFGTTQFWLALDNDSGHAASIFLFQMAFAASAA TIVSGAVAERERFLGYMVVSVALSALVYPVVGHWIWNQAGWLRQMGFVDFAGATVVHS VGGWTALVTIIILGPRLGRYGPKKRRFDEYSISLVTLGGLLLWVGWGAFNGGSAMAFG TGVGPIIARTMLLAAGAGVASIAIGLGLFRHVRAELLVNGFLGGLVAGTAGVHLMTGT VAFGIGALGAVTVIIARDILDALKIDDVVGAVPVHLAAGLIGTLSIAFTAPVDLLPAG SRLAQLGIQALGITAVGGWVVCSMAPLILLLRARGLLRVHPKDEVRGLNLTENNQRNA LMDLLAEMKRHQRSGSFSRRVRIDRSTEYGVLAYRYNRVLDRVEAEINARVDSIRKER MSRLLAEEAFESMREAQEENAWSARHDKLTGLGNRKYLEEVAVETSTGPLGATLLIAI DLDRFKEINDTYGHEAGDVVLEHTAQRLSEKIRTGRDFAFRIGGDEFVVLMEFAGTQD DAFEYCSDLLFELLQPVRYKATDLQVGASIGFALCKPPETLGAALRRADLALYASKAD GRSCVNAYSASIGSAHDEKMNLIRDFKQAFANNEIEVTLQPQIDGKTMEIAGCEALAR WHHPVRGIVSPDVFVPVAKEVNMLADLDRRILDLALAAYWNFASHGIALPSLSVNVSA ERLGHPDLIKELQQREDLPPDGLAFELLETVFLDQLTENYANQIAALKAMGIAIEIDD FGTGHASIAGVLALKPDRLKIDRMFTSGIDEKPARRDLMRGLIEMAASAGAETVVEGV ETEAQAQVLSELGADVLQGFAFARPMDQERFLLWAQDWNAARQMPKTG" /product="Ammonium transporter 1, member 1 (AtAMT1;1)." /transl_table=11 /note=", Rh-like protein/ammonium transporter, Ammonium Transporter Family, amt: ammonium transporter" /note="Conserved hypothetical protein" CDS complement(598928..599419) /locus_tag="Silicibacter_604" /translation="MSHEIDSGEVLATVEASPARRVIGVAMLIGLGLMTLYVAMASTP GVAWQGFLMLVSGLALWMGYRMWHATAHRIELTAAGLRCSDGTEIIRIQDLQHLDRGF FAFKPSNGFLMRSTTSAERCWYPGLWWRMGRRIGVGGVTPGSQTKTMTEILAALMVER DAG" /product="hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1739 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(599502..600221) /locus_tag="Silicibacter_605" /function="COG: Predicted transcriptional regulators" /translation="MHTFTQIDLASGLWEIFGKIRKNMSETTGKESSFSADTHSAVLD EGEKQRIRLELGRRVKGLRSAAGMTLEQAAERTRLAVSTIYKIENGKVSPSFENLLRL ARGYGVGLEKLIAEPEDEVHTTRLTVTRAGQGRSVEGKVYDYEVLCNGLTGKKIIPLI GTICAKGEGVPAHLDRHDGEELLLVLEGEVELRVEHYEPVILAAGDCAYYDSTLRHGV RSTGPDKARVFWACTHLGALS" /product="Putative HTH-type transcriptional regulator ycjC." /transl_table=11 /note=", Lambda repressor-like, DNA-binding, Helix-turn-helix" /note="Conserved hypothetical protein" CDS 600744..602198 /locus_tag="Silicibacter_606" /function="COG: Na+/H+ antiporter" /gene="nhaC" /translation="MPLQKTDIRPSIGLALLPIVLTLAILGVQIFYFGDFTPHIPLAI GIALTAVVGLIEGLSWDEIEKGAFHVIAVSFPAVSVLILVGMIVGTWIASGTVPTLIY YGLSLLSPELFLAAGMILCSIVSLALGTSWGTVGTVGLALMGIGEGFGIPAYWTAGAV VSGAFFGDKISPLSDTTNLAPAVTDTQLFDHIRNMLPTTVPAMLIALAIYTVMGFNLG DGAPSFERIESFKGALEGSFDITPWLLLPALLVVGLAMMRMPAIPTLFIGVVVASLIA IFVQGASLHDVFTYANYGYSVETGVAAMDSLMNRGGIQSMMWTISLILIALGFGGALE RTGCLAAIIELLTKRVKTIAGVQTSAILSSMATNTVAGDPYLSIALPGRMFKPVYDRI GYSRLNLARATEEGGTIISPLIPWNAGGAFVISALALGVSDGKIENLLYIPLSFACWL APVFGIFYAWTGLFTPKAEAADTVRAEAAQHPAE" /product="Na" /transl_table=11 /note=", Na(+)/H(+) antiporter (Sodium/proton antiporter) (Sodium/hydrogen antiporter)., Na+/H+ antiporter NhaC, Na+/H+ antiporter family, antiport_nhaC: Na+/H+ antiporter NhaC" /note="High confidence in function and specificity" CDS 602341..603252 /locus_tag="Silicibacter_607" /function="COG: Pirin-related protein" /translation="MSLRPILEKRSAQPTMEGAGVHLHRAFGFQDPSELDPFLLFDDF RNDHPELYQQGFPWHPHRGIETITYVLAGSVDHGDSLGNTGTLGAGDVQWMTAGSGIL HQEMPSGNQKGQMHGFQLWGNLPSAQKMTAPRYQDVQGKDIPEVIDDDGTRVKVIVGE FWGKRGPVDGIAADPQYLDVYVPAGVKKTFKIDTYRRAFAYIFEGQAAFADASQPQGV LLEKEVAGQEVNIRDLSGDRTLVRFGTGEEITVQAGPEGVRFLLISGAPIEEPVAWHG PIVMNTQAELQKAFSELRNGTFIKPAH" /product="pirin domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO1737 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(603569..604057) /locus_tag="Silicibacter_608" /function="COG: Acetyltransferases, including N-acetylases of ribosomal proteins" /translation="MELKDLKSGRLHATEPVQMTAADREALFAPEVVAFLPPGFQNLG SDAARRHLIDALQQEAEVVALSAQDQEIVGLVILSFAHDAAGQRNLGYLFTRRAWGQG YASEMLRALQDQLRGTHVVLSGGVMAENAASARVLEKCGFEPGEKTASGEMTYVWDAA QG" /product="Hypothetical P20 protein." /transl_table=11 /note=", GCN5-related N-acetyltransferase" /note="Conserved hypothetical protein" CDS complement(604062..604691) /locus_tag="Silicibacter_609" /function="COG: Transcriptional regulator" /translation="MPLLSEHMFRYSVYMARTQGSHSDITGPRIRAAAQELFARHGYA AVSMRQIAGAVGVQAGALYNYTADKQSLLFDLMQAHMEGLLTAWAAEDLPEDVMGQLE RFVRFHIRYNLERPDAVFIAYMELRNLTDENFARIEERRRTYENQLEGILKAGVTQGL FQVPDTKIAALAVIAMLNGVLTWYRDGGRLSLVEVETLYWDMVRKSVGV" /product="transcriptional regulator, TetR family" /transl_table=11 /note="identified by match to putative ortholog SPO1736 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 604775..605077 /locus_tag="Silicibacter_610" /translation="MTATPAARLFFAPTPRSTRLGVLLACTLLSLATACSRVPELEDR LPADLRSQPYPDLLPLETALSDEPLPEDESAALSEALDARAEGLRRRAEELRRRQF" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS 605173..606459 /locus_tag="Silicibacter_611" /function="COG: Homoserine dehydrogenase" /gene="hom" /transl_table=11 /note="identified by match to putative ortholog SPO1734 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="homoserine dehydrogenase" /translation="MTEPLRLGIAGLGTVGIGVVKIIRRHAALLEARTGRPVVITAVS ARDATKDRGVSLKDYAWETDPVALATRDDVDVFVELMGGHEGPARLATEAALAAGKDV VTANKALLAIHGQDLAERAEANGSVIRFEAAVAGGIPVIKSMTESLAGNEITRVMGVM NGTCNYILTQMEATGRGYNALFEECGKLGYLEADPLLDVGGIDAGHKLALLASIAFGT KPAFDDVKLEGIQRIAIEDIRHAADMGYRIKLLGVAQRSARGLEQRMTPCLVPANSPL GQLEGGTNMVVIEGDAIEQVVLRGPGAGEGPTASAVMGDVLDIARGLRISTFGQPATT LSKEPAAQTGLPAPYYVRMALQDKPGALAKVAAALGDAGVSIHRMRQYDHATTVAPVL IVTHKCTSAMLEQALEALAATGVVEGAPVALRIEEL" /EC_number="1.1.1.3" CDS 606636..607619 /locus_tag="Silicibacter_612" /function="COG: Fructose-1,6-bisphosphatase/sedoheptulose 1,7-bisphosphatase and related proteins" /gene="glpX" /transl_table=11 /note="identified by match to putative ortholog SPO1733 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="fructose-1,6-bisphosphatase, class II" /translation="MTSTTADAPFHDRLLSLGLARVAEQAALASAPLIGRGDEKAADQ AAVNAMREQLNLLDIAGVVVIGEGERDEAPMLYIGEEVGTGNGPGVDIALDPLEGTTL TAKDMPNALTVIAMGPRGSMLHAPDTYMDKLAVGPGYPEGVVSLDMSPRERVEALAKA KGCTPADITVCILERPRHEAMIAEVRETGASIRLITDGDVAGVMHCAEAEVTGIDMYM GQGGAPEGVLAAAALKCMGGQIFGRLLFRNDDEKARAAKAGITDLDRVYSRDEMVTQD VIFAATGVTGGSLLPRIKREPGWVETTTLLMRSKTGSVRRMSYRTPLSAHQ" /EC_number="3.1.3.11" CDS 607667..609478 /locus_tag="Silicibacter_613" /function="COG: Single-stranded DNA-specific exonuclease" /gene="recJ" /transl_table=11 /note="identified by match to putative ortholog SPO1732 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="single-stranded-DNA-specific exonuclease RecJ" /translation="MGKDEGRVPRGSGLFYTEDEGIELSFLGVETSLTGRRWVGPGVD QARASEHLAQETGLPPAVCQVLARRGVPAHEATGFLTPQLKDLLPDPRRMKDMETAAA RFLQAVERRERIAIFADYDVDGGSSAALLLVYLRQMGQQATLYIPDRIDEGYGPNDAA MAALARDHDLIICVDCGTLSHGPIAAAKGADVVVLDHHLGGETLPDCVAVVNPNRQDE DGDLGYFCAAGVVFLMLVEVRRQARDKGLGAGPDLMAMLDLVALATVADVAPLIGANR ALVRQGLKVMGRRQRPGLVALADVSRMDAAPSTYHLGFLLGPRVNAGGRIGKADLGAR LLSTDDPHEAAALSERLDQLNTERRDIENAVRAAALEQAEARGFDAPLVWAAGEGWHP GVVGIVASRLKEATGRPAVVIGLDGEEGKGSGRSVSGIDLGASIQKVAMEGLLLKGGG HKMAAGLTVARGQLEPAMARLAELLDKQGAGDLGPADLKLDGMLMPGAASVELIEQIE QAGPFGAGAPAPRYGFPDVAVRFAKRVGESHLKVSFTDGMGGNIDAIAFGAFDTNLGP RLLEHGGARFHVSGRLEVNTWGGRQSAQLRLEDAAEA" /EC_number="3.1.-.-" tRNA 609593..609664 /locus_tag="Silicibacter_20" /gene="Silicibacter_20" /description="RNA" /note="Created by Search for RNAs Autoannotator" tRNA 609882..609953 /locus_tag="Silicibacter_41" /gene="Silicibacter_41" /description="RNA" /note="Created by Search for RNAs Autoannotator" CDS complement(610016..611413) /locus_tag="Silicibacter_614" /function="COG: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs" /translation="MPSDLPAFMPDRRSDVPIFEQICTALRSRIRSGALATGARLPAT RALAGDLGVARATVVTAYEQLVAEGYLMARRGSGYTVCAMGEVELPAKGTPTPPADLS ERGDLLLEAGQPDMRLFPHRAWAKAVARLCRTRPEDMLMGCGRFGHPDLRQAIAAHVN DWRGIAARPDQVLVTSGATEALDVCLAALASSTGAVGVEDPGYPPIRRFAQAQGRRIR DLALDSQGAEVPTTGDGTDVVVLTPSHQYPLGGAMSAGRRQEFVRWAAQSQGWIIEDD YDSEFRYAGRPIPALAGVDGQGRTVYIGSFSKIFSNSLRMGYIVAPEALVERLVRAMR RKGARASAMPQAALAEFMQHGEFYRHLRRVRRIYAERHRTLIARLRSDFSDVGHVEDY QAGMQVVLHLRPEICDQTVTTAARAAGVGAEALSSYSRRAGAFNGVVLGACLNDLDEQ AEALSRLRATISSTG" /product="transcriptional regulator, GntR family" /transl_table=11 /note="identified by match to putative ortholog SPO3185 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(611521..613602) /locus_tag="Silicibacter_615" /function="COG: Anaerobic dehydrogenases, typically selenocysteine-containing" /translation="MSRQARSSQDTRVVPSVCPLDCPDTCSLSVEVTGDQITAVRGSN ANPFTAGVVCNKVTRAYPDFVHGPARLTHPLRRVGPRGAGTFERISWEDALDLVVEGF HAAIDAHGAQSILPLNYAGPHGELAGGSLDRRFFYRLGATRMDRGPLCGGVRSLAYES LYGNAPGMPPEQAQHADLIVVWGNNVTVSNLHLTRIVKAARAKGARLVVIDPKRIKIA EQADLYLQVRPGTDVVLAHALAAELERRGAFDAEFIAHWVHGVDEYMDEARKHSVENA SEICGLAVSDILKLADWMQTAQRLATSTGNGMERGRSGGSGLRAAMALNALLGQHGRL GAGVVAKSGLASPKTRARLQGDHLIDPETRVVNILDVAQLMLDREQSTPINAVMIYNH NPVATHPDQTRMIAALSQPEIFTVGCDVVMTDSMAYCDVILPAATHFEHDEIFAAYGQ NYVQRAEPVIAPIAESLPNTEIFRRLAARFGYIEPEHQASDVQLMDDAMDASHPQFEG RPPSQMPVDRALEMQKSDGAALVLCETVTPDTETGRIELFSAALEAETGFGVPRYDPV SQDLPLVLITPSSDKRINATFGSAPLSAGPESIEVHPEDAAARGLQDGDLVEVANARG SVTFRLKISDAMQRGVTYAPKGTWRISSKTGLTANALIPVEVRTDIGDGACYNETFVE LRAYAGVRAAE" /product="oxidoreductase, molybdopterin-binding" /transl_table=11 /note="identified by match to putative ortholog SPO3183 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(613797..614819) /locus_tag="Silicibacter_616" /function="COG: FOG: GGDEF domain" /translation="MMTFEQLTGLADQLCPMHVIIDADGLIVSHGPTLDKIRGDNGWL GKPVLEVLDLQRPRSVKAVADLMNTAGSKLHFQLHDAPHTRMKGVLVPLPKGRGAFIN LSFGISVLDAVRDFNLTSQDFSPTDLTIEMLYLVEAKSAAMEASRQLNLRLQGAKIAA EEQAFTDTLTGLKNRRAMDHVLNRLISGGRDFALMNVDLDFFKSVNDTYGHAAGDAVL QRVASIMVECTRKSDTVARIGGDEFVLVFEGLMDRNRINDLACRLIERLEEPIMYGAD ECRISASAGTTLSTDVAQPLPATLLHQADLALYASKRAGKAQHMFYTPSLEDEMDLVE QNSKSA" /product="Phytochrome-like protein cph2" /transl_table=11 /note="Phytochrome-like protein cph2 (Bacteriophytochrome cph2)., GGDEF, GGDEF domain, GGDEF: diguanylate cyclase (GGDEF) domain, , belas" /note="High confidence in function and specificity" CDS complement(614816..615403) /locus_tag="Silicibacter_617" /translation="MHGLINRAVQAFVTSTYGDKRWADIMDESGLGFTEFEAMLVYPE DQSIRMLRAVEAKLERPLDEILEDVGTFLVSNPQVEALRRLLRFGGVNYVEFLHSLDD LPDRARLAVSDLHLPGLELIEQAPGQFQLLCQPGVPGYAQVMTGVLRAMADDYGALVI LDLVGEQEGSDVISITLVESDFSEGRAFELGAHTL" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2748 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(615819..617378) /locus_tag="Silicibacter_618" /function="COG: Trimethylamine:corrinoid methyltransferase" /translation="MSQTQARRRRGGGRAGAAARRGAATLEQMPWKPPVNIDRPVEPL TAEGIAAIHDGAMRILEEIGVEFLNDEALEIFKEAGLKVDGALVRMDREFVMEMVGKV PSEFTLTPRNPERAIRIGGNSIVFGNVSSPPNYWDMDLNKKVPGTREHCQNLLKLTQY FNCIHFAGGYPVEPVDLHASIRHLDVLYDKLTLTDKVMHAYSLGKERVEDVMEMVRIA GGLSHEEFDSQPHMYTNINSTSPLKHDEPMIDGALRLVRRGQPVIVSPFTLAGAMAPV TMAGAVAQSLAEALCAIALFQYVRPGTPCAIGTFTSNVDMKSGAPAFGTPEYMRATQM TGQMARFYGLPMRSSGVCAANVPDGQAMWETSNSLWAAVQSGTNMVYHAAGWLEGGLI ASPEKFIMDCEVLQMIQRYMDPVINATGPEEIALDAIREVGNDGHFFGIQHTQDRYAT AFYQPFLSDWHNYEAWEAAGGTWTAQRANGLFKQIINEFEAPTLDEGIREELQAFVAR RKEEGGAPTDF" /product="trimethylamine methyltransferase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2750 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(617508..618200) /locus_tag="Silicibacter_619" /function="COG: Predicted phosphatases" /translation="MTLSALLFDKDGTLFDFAQTWNGWALGMLTELAGEDTGRLGAMA EAVRYDLTERAFHPDSLVIAGTNDEVAEVLSPHVPQMSETDLEQYLIRTAGEAELAQA VPLAPFLSDLRASGLKLGVMTNDGAHSAQRHLTRSGVYDQFDMVIGADSGFGSKPDPD PLLAFCSHVGVAPGATAMVGDSRHDLIAGRAAGMRTIGVLTGLARAEDLADLADVVLP NIGHIPDWLAQA" /product="HAD-superfamily hydrolase, subfamily IA, variant 1 family protein" /transl_table=11 /note="identified by match to putative ortholog SPO2751 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(618237..618521) /locus_tag="Silicibacter_620" /translation="MPFSADRAEVLGLKALTWLAGNEELLPIFLGSSGASLSDLRDRV NDPEFLGAVLDFLLMDDSWVMAFCDHEGVPYPSLVEARATLPGGEQVHWT" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2752 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 618638..620041 /locus_tag="Silicibacter_621" /function="COG: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain" /translation="MQGTILVIDGVSTNRIILKVQLTAACFQVLQADSLSAAMALMKD NRPDLVLTAMTLPDGDAADVKRALDRVRHGVGVPVIALCPQNDRGTRIMALSAGIDEV LPLPVDDMILQARIRSLLRMRMQDDELHLREEGVAAFSVPLKDTTAVQITQSDATVAL VCHDLQTAQKWKSRLSASVDFRLKAYNVDAIQDLMRTPVPDVIVIELNEHSAGMALRL LADLRARISTRDSVVIAVPNPADASIAAEALDRGAHDVLHCGFQVDELALRITAQLAH QQRAEMIRNTLRDGYRAAMRDPMTGLYNRRYARPFLEQVTQDAQSAGSNFAVMVADLD HFKRINDAYGHPVGDAVLIEAARRLQAELRGCDLLARIGGEEFMLVLPDLHPDEASTV ANRLCRAISGSPFVVKGCAQPLEVTISVGAVVAQHGTQPLSADDLFVAADRTLYEAKH AGRNQAAIKGLTQSAAA" /product="response regulator/GGDEF domain protein" /transl_table=11 /note="GGDEF, GGDEF domain, GGDEF: diguanylate cyclase (GGDEF) domain, , belas" /note="Hypothetical protein" CDS complement(620087..620560) /locus_tag="Silicibacter_622" /translation="MPRWLKAVFALSLAGNLAVVGIMVGAALREGRPGPHRHKAPPPA AADAIGAVMYRSFDDAERRALRRLASGKHGDIVERRLAELNVLLEVIQQDPLDADRLR AEIDAQSQSAQAFRSSMHEVWIAELQKMTPAERAGFAEKVRDHIARFRKPREDRP" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(620593..620988) /locus_tag="Silicibacter_623" /translation="MGNKLNSQTEIDDLDALFAEARATRPEVPASLMESILADAADAQ AGHLSSTATEPPRRGPIEVLIAALGGWPSLGGLVAASCVGLWVGINAPDLMLETPGLQ TLARTGSETTDYAAYETFDLATVLAEDLQ" /transl_table=11 /note="unique gene to TM1040, belas" /note="Hypothetical protein" CDS complement(620981..621607) /locus_tag="Silicibacter_624" /function="COG: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog" /translation="MTAETGVDRAHGATRATFVEPALSDEALLIRFGNGDPSAATELT RRLAPRVLSLATRVLGNRAEAEDVTQEAMLRLWKIAPDWRNGEARVSTWLYRVGMNLC IDHKRRVRGGHVDLDAIPEPPDPAAGAAEALQEGARRDALQDALMTLPERQRQAVVLR HIEELTNPEIAGVMEISVEAVESLTARGKRALAAALAGRREELGYQDG" /product="RNA polymerase sigma-70 factor, ECF family" /transl_table=11 /note="identified by match to putative ortholog SPO2756 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(621678..622181) /locus_tag="Silicibacter_625" /function="COG: Ca2+-binding protein (EF-Hand superfamily)" /translation="MKKQILIASLLTLTTALAGGQVLAKQGFGPRHEKPTFEQLDANG DGALTQDELAARGQARFAEADQNGDGVLSADELNARAQERMARRTAKMIERFDTDGDG GLSAEEMPRRHGAINLLEKADTDGNGSISKAEFDTAQAIVEEIRKRQHHRGGPEKHRA GAGQDSE" /product="EF hand domain protein" /transl_table=11 /note="identified by match to putative ortholog SPO2757 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 622447..622878 /locus_tag="Silicibacter_626" /function="COG: Uncharacterized protein conserved in bacteria" /translation="MTDTQGLTPQHASVDEERQTKPALWKGWRGRCPNCGEGKLLHSY LKVNDSCSECGEEFHHHRADDGPAYLTILIVGHLMAPLMHYMAFEWRPSPWVMASVFS TGCLAASLYLLPHLKGVVVAYQWARRMHGFDKTPKEKTSAA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO2758 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 622967..623695 /locus_tag="Silicibacter_627" /function="COG: NTP pyrophosphohydrolases including oxidative damage repair enzymes" /translation="MAATGASDTSIDKTTIRDAATVIVVRDSKSDDPKVLMGQRGAKA AFMPNKFVFPGGAMDLGDREIALAGDIGAPCRNRLQEDGGAEVWRALCVAAARELWEE TGLILGQPGYWPAEVPKDWQSFAATGHVPDASALTFVFRALTPPGRPRRFDARFFLLK AEDLRGDLDDFSRASDELSHLQWIPLSQVRSFDLPFITEVVLAEVTANLRHESPPEST PFFRNDDEESLFLRLHGRPMSQAD" /product="hydrolase, NUDIX family" /transl_table=11 /note="identified by match to putative ortholog SPO2759 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(623722..624624) /locus_tag="Silicibacter_628" /function="COG: Permeases of the drug/metabolite transporter (DMT) superfamily" /translation="MPLWIPVTLAAASFQTVRFMLQKVLSSVTLSAAGATFSRFVYSA PLILLLLWAYVGATGAELPALSAAFWGFAIIGGLSQILATVCVVALFKERNFAVGITF KKTEVIQTAIVGLVILGDEVSPLGWVAILIGLVAVLVLSKTKDGPKGLWGQLTGRAPL LGLGSGVLFAFSAVSYRGASLELQEPDAVLRAAVTLGVVVCLQTAMMLVWLLSRDPGE ILRVWDARRVAVWVGLTSMGGSFCWFLAFTLQNAAYVKALGQVELLLSLLASLLVFKE EVTRREIIGMALLVLSILALILAL" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1442 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(624670..625695) /locus_tag="Silicibacter_629" /function="COG: Fatty-acid desaturase" /translation="MHDMSAMQPASRTAESAIGMPENLLEVPPAIDVAEAEARAVLPK HPEWGTFLLIVACYLLWAGALFGLAQVSQALAVVAAGLMVALHSSLCHEVLHGHPFAR RALNEALVFLPLNLCVPYGRFRDTHLAHHQDENLTDPYDDPESNFMDPEIWARLPKWR QSLLRVNNTLLGRILLGPMIGQICFMQTDWRLARNGVCGIGRDWLLHGIGILLVLGIV SLSEMSVLAYLGAAYIGLALLKIRTYLEHRAHEDMHGRTAIVEGRGVLGWILSFLFLN NNLHIVHHLYPGVPWHRLPRLYRQHRARFQDRNDGYVLPSYASVFRQFAFRAKDPVPH PLWKSSE" /product="fatty acid desaturase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO1441 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS complement(625688..625894) /locus_tag="Silicibacter_630" /translation="METRGRSLVKAIVWNVIGLISMTAVGFIATGSLSAGGMMAGINT ALGFLSYLIYERVWAGIRWGRHHA" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1440 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 625999..626868 /locus_tag="Silicibacter_631" /function="COG: Predicted transcriptional regulators" /translation="MTDKIDKRLRAVQFRDRLERALRDSGLSQSALARATGVDRSTIS QLLTDDGARLPNAHVIGACAEALGVSADWLLSLSERPESAAELLASSIAMTEAPRALV DERIYEWHREAAGYKIRHVPATLPDMLKTRAVLEWEYAPHLGRTADQAIGASEDRLTW MRQAGSDYEIALPIYEVDSFAKGVGYYEGLSAEIRIEQLEHLERLTTQLYPRLRVYLY DAKRLYSSPLTVFGPLLCVFYAGSHYMAFRDRARVETYTGHFDRLVREADITARQVPG RLRALRAQIGVAT" /product="DNA binding protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1439 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(626939..627691) /locus_tag="Silicibacter_632" /function="COG: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /gene="linC-1" /transl_table=11 /note="identified by match to putative ortholog SPO1437 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase" /translation="MRVLVTAGASGIGRAMAEGFVATGAEVWVSDVDRDALAALPDGW NARQVDATDEVAMRALFAEIAQAGGLDVLCANAGVAGPTALVEDIQLEDWRACVSVNL EGAFLAAKYAAPLMKAAGQGSIVLTSSTAGIYGYPNRAPYAAAKWAVIGLMKTLAMEL GPFGIRANAICPGAVEGPRMEGVLAREAALKGMSRDAVHEGYAAGTSMRTWVTAEDVA NMAVFLGSEASRRISGQVIAVDGHTENPDPKV" /EC_number="1.1.1.-" CDS complement(627691..629166) /locus_tag="Silicibacter_633" /function="COG: 3-hydroxyacyl-CoA dehydrogenase" /translation="MTKTAAIIGGGVIGGGWAARFLLNGWDVRVFDPDPEAERKIGDV LANARRSLPGLGNVALPPEGSLSYHETLAETVQGVDWVQESVPERLDLKQKVYAELEA HAPGGAVIGSSTSGYKPSQLQDGFTNAAQIVVAHPFNPVYLMPLVEVVTTDVNTPEMI AKAKAIITEIGMYPLHLKKEIDAHVADRFLEAVWREALWLVKDGIATTEEIDNAIRYG FGIRWAQMGLFETYRVAGGEAGMKHFMAQFGPALSWPWTKLMDVPEYNDALVDLIAGQ SDAQSGQYSIRELERIRDDNLVGMMRALGANNWGAGALQNAHDAARLSEAGLARSMED VADLSQPILTQSRVVPLDWTDYNGHMTESRYLDAFAQSTDRLMEIIGCDADYIASGGS YFTAETHIRHIDEVHAGHPVQVRTRVIMGAGKKMHLWHEMYEGDRLLATGEHMLLHVD LKTRRSAPPAAHIEANLVKLAEAHAALPAPEGLGRAIGAPR" /product="3-hydroxyacyl-CoA dehydrogenase family protein" /transl_table=11 /note="identified by match to putative ortholog SPO1436 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS complement(629179..629739) /locus_tag="Silicibacter_634" /function="COG: Bacterial lipocalin" /gene="blc" /translation="MIAVAFRSTLAATLVALTLAAPVQAAEYRDTDVAMTVQEDLDLS RYLGTWYEIARFPNRFEQGCAAVTAEYSPLPKDRIKVVNSCRKGGVTGPLETVEGVAR VAGPGKLEVNFVSWLRLLPFTWGDYWVLDVDADYQVAVIGTPKGKQGWILARTPNISA TELEAAKAVLRKNGYDTGALEMVPQN" /product="Apolipoprotein D precursor (Apo-D) (ApoD)." /transl_table=11 /note=", Calycin" /note="Conserved hypothetical protein" CDS complement(629805..630722) /locus_tag="Silicibacter_635" /translation="MPLSMNREVFITCAVTGSGGTQDRSPHVPRSPKEIAESAIAAAK AGAAIVHCHVRDPETGAPSRDLGLYREVTDRIRESDTDVVLNLTAGMGGDIVFGGVER PLPVTEDGTDMIGASARVAHVAECLPEICTLDCGTMNFAEADYVMTNTPGMLQAMGQM MTDLGVKPEIEAFDTGHLWYAKQLVKDGVLKSDALVQLCMGVPWGAPNDLNTFMAMVN NVPDDWNWSAFSLGRDQMAYVAASVLAGGNVRVGLEDNLYLDKGVLAENWQLVERAGT IVSNLGARVITPAEVREKLGLQKRAPITK" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO1435 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 630740..631888 /locus_tag="Silicibacter_636" /function="COG: Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain" /translation="MYRVVPRVIPRLLPGFQFALICSLAQPWQQELTRSESKLMKSAK NILQPENRPLKTAVLVMDECNTLSFAAAVDPMRAANRLAGRAAFDWDYVSASAEPPML TSGLTVPTTPLARLDDCDLLIVVAGFQLARHATPSLLAGLRRIAGSGATIAGIDGGPW LMAEAGLLDGHAATTHWEDLENFSARFPDIHCRTDRFTVSEGRMTSGGATPAIEMMLH IIGARHGHGFASRVAGLFLYDGTASPQRSQSRLGHHKHNALTAKANAIMEAALDDPKP LAEIAEVLGTSPRSLQQQFRLRLNTTPQDHYLQLRLAEARRLVTDTNLPLMEIAVATG FTSQSTFARAFRTAHGLSARELRQNSAETAFASYPVLKATSHASHSTN" /product="transcriptional regulator, AraC family" /transl_table=11 /note="identified by match to putative ortholog SPO1434 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(631967..633013) /locus_tag="Silicibacter_637" /function="COG: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)" /translation="MKKNRLGRTDMMVTDLCLGTMTYGTQTDEADAHAQIDMALEAGI NFLDTAEMYPVNPIRAETLGLSEEIIGNWNQKTGRRKDYILATKHSGEGSVARDGAPI TGKTIAATVEASLKRLKTDYIDLYQFHWPNRGSYMFRKNWSYDPTASSYNRAQVIADM EECLAALQAQVEKGNIRAFGLSNESAWGTAQWLRLAEEGKGPRVASIQNEYSLLCRLY DTDLAELSHYEDVGLLSFSPLGAGYLTGKYQEGAVPEKSRKSINPEMGGRQSDRVEAA VAAYLTIAADHGLDPVHMALGWCRTRPFMASAIFGATDVAQLAHILEGADLELAPEVL AQIDQAHRAHAMPY" /product="oxidoreductase, aldo/keto reductase family" /transl_table=11 /note="identified by match to putative ortholog SPO1433 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" CDS 633068..634513 /locus_tag="Silicibacter_638" /function="COG: Permeases of the major facilitator superfamily" /translation="MQVIERRSWGALPTLLPTCLKSGPFPFACPTPPCTGQRHTAICA ALATAHEKRPPNVENATAPIWQIPMVSPAMRTILSFAALFLSVILLQLSTGGVGPLDA ISGAAMGFDNRQIGLLGSAHFFGFFIGCWWTPRLMGRVGHSRAFAVCTALGAMGLLAH TLTDDPYAWAAMRIASGLCVAGCYTVIEAWINAKVTNENRGRTSGLYRIADTSASLAA QLLIAVLPPAHYISYNLLAILCCATLLPLMMTRASQPEMPAAPRLRPRLAWRCSPLGV AGVIVSALSGASFRMVGPIYGQEVGLVIDQIAFFLAAFVLGGALAQYPVGWLADKFDR RWVLIWLSGVSMIACAVTLPASGGGTIAIMASAAFFGLTTVPIFSVSAAHANDFATSE ERVELSAALMFFYATGAIAAPFIASALIEAFGPGALFVFIAVGHAGLIVFGLARMRSR ATPTERTRYVYAPRTSFTIGKMLKRAREGRQ" /product="membrane protein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO1404 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS complement(634615..635343) /locus_tag="Silicibacter_639" /function="COG: Transcriptional regulator" /translation="MFERVPKGLAFTPVGRSYHNRIAGVFADLRAATAELKPEPNKVL ISVTPTFAAKWLIPNLPDFATAHPNIDLRIMATEKVSSFHSDGIDLAVRQGSPPFGAS LDVTLLFKQSLVAVAAQKLADKGGTPLDPETLAKQPKVHDAHDLWPSYLAHLGVQDQS ARHLRLSQTSLAVDAAIAGQGVALVSRFLVAHDLAAGRLVEVGEAWAPDRNDFYVLMP RTAKNNAPTTNVLTWLKSRSAKDT" /product="HTH-type transcriptional activator ampR." /transl_table=11 /note=", LysR, substrate-binding, LysR substrate binding domain" /note="Conserved hypothetical protein" CDS 635618..636016 /locus_tag="Silicibacter_640" /function="COG: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)" /gene="fabG" /transl_table=11 /note=", 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (3-ketoacyl- acyl carrier protein reductase)., Glucose/ribitol dehydrogenase" /note="High confidence in function and specificity" /product="3-oxoacyl-" /translation="MEVYLMNVIRPTRLITPVMQAQGGGAIINISTFAAFEPDPLFPT SGVFRAGLAAFTKLYSDKYASENIRMNNVLPGFIDSLPETEDRKARIPMGRYGFASEV SSLISWLASENGGYMTGQNLCIDGGLTRAV" /EC_number="1.1.1.100" CDS complement(636404..638092) /locus_tag="Silicibacter_641" /function="COG: Uncharacterized protein conserved in bacteria" /gene="yqiK" /translation="MDGSFLLVPVISILALVALIGLVLGRLYRRATREVSLVKTGSGG KKVIMDGGTVVVPLLHEISPVNMKTLRLEVQRSGEAALITQDRMRVDVGVEFYVSVMA TEEGISRAAQTLGDRTFDVEQLREMIEGKLIDGLRAVAAQMTMDGLHENRADFVQEVQ NAVSEDLLKNGLSLESVSLTALDQTPFEALDENNAFNAVGMRKLAEVIATSKKERAQI DAEAEVAVRRAAMEAERHKLLIEQDEQQARIEQMQKVETMRVAQEAEIAARTEDSVRE TERARIAREEAIRAADIERERKIREAEITKERELEVAEQERQIIIAQKSEEESRARAS ADLARAEAIKATEAVATAREVAEAERQKQIVLIEAAREAERQATGIRLAAQAEKEAAA DRAEARREEAQAEADALNIRAEAKKNDMLAEAEGKRALVEADNALSPELVRMKVDLAR IEAMPSIIAEMVKPAEKIDSIKIHQVGGVGGGAAYSSAGASGDKPVVNQALDSIMGMA VQMPALKTLGRELGISMEDGVSGVVNGMLEGNDIAPEVAADPEATDQAKTSEVH" /product="Hypothetical protein sll1021." /transl_table=11 /note=", Band 7 protein, SPFH domain / Band 7 family" /note="Conserved hypothetical protein" CDS 638581..640869 /locus_tag="Silicibacter_642" /function="COG: Methionyl-tRNA synthetase" /gene="metG" /transl_table=11 /note="identified by match to putative ortholog SPO1403 from Silicibacter pomeroyi DSS-3" /note="High confidence in function and specificity" /product="methionyl-tRNA synthetase" /translation="MPSQLRTPPPPVTSGAAEPVSASRPSTDSKFRASRSALSSASRS TAPISRSASSSGPPGPSRSASLSPPRRLPPKSNARTSIPTRPSKSARATVNGAKAPSR RRSVICKYSPICMPLYANRYVHACARFQGLGRQIRLEPPRCGAVGQGRMHPKPERFTG FFALHWIMGFSYLPAWDRRAARQATWMDDMARILITSALPYINGIKHLGNLVGSQLPA DLYARYNRGRGHEVMFLCATDEHGTPAELAAAKAGKPVADYCAEMHAVQADIAKRFGL SFDHYGRSSSPQNHALTQHFAGKLEEAGLITEVSEKQVYSNADGRFLPDRYIEGTCPN CGFEKARGDQCEECTKQLDPTDLINPRSAISGSTDLEVRETKHLFLRQSAMRDQLDQW IDSKTDWPVLTTSIAKKWLHDGDGLQDRGITRDLDWGIAVKKGDADWPGMEGKVFYVW FDAPIEYIAAAGEWAEAHGKTDADWERWWRTDKGADDVKYVQFMGKDNVPFHTLSFPA TLLGSGEPWKMVDHLKSFNYLNYDGGQFSTSQGRGVFMDQALEILPADYWRWWLLSHA PESSDSEFTWENFQQSVNKDLADVLGNFVSRITKFCRSKFGEEVPDGGTWGEQEQTLI EELSTRIGAFERHMEAMEVRKSAQELRAIWVAGNEYLQSAAPWSVFKEDPERAAGQVR LGLNLIRLYAVLSAPFIPDASDRLFAALGTEDRSWPEDVAAALAALPAGHAFTVPEVL FAKITDEQREEWQERFAGGRSA" /EC_number="6.1.1.10" CDS 641256..641435 /locus_tag="Silicibacter_643" /translation="MSNLKPISQADITAATQPETYPTYHAEDLTRGGVQARILLNGQI YSLRITRAGKLILTK" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO0789 from Silicibacter pomeroyi DSS-3" /note="Hypothetical protein" CDS 641487..642755 /locus_tag="Silicibacter_644" /function="COG: Uncharacterized iron-regulated protein" /translation="MKTPLFTGAAVLALAAGTSAAFATSKGEVLINYANIAEAKYEDS LITAKTLQAAVGALIDAPSAETLAAAKKAWLAARVPYQQTEVYRFGNAIVDDWEGKVN AWPLDEGLIDYVDASYGGPTDENAAAVLNVVANPDFSLSGQAIDASEITPELLAETLH EADGVEANVATGYHAIEFLLWGQDLNGTEHGAGARAWTDYATGEDCTNGNCDRRGAYL KAATDLLVSDLEWITAQWAEGGAARAEVLSDENAGITAILTGMGSLSYGEQAGERMRL GLMLNDPEEEHDCFSDNTHNSHYYDGLGIQNVYLGEYVRVNGALVSGAALADLVEAAD PALNSELTAKLATTMMKLGRIKTAAEAGFSYDQMLAQGSTAGEALVMGGVDALVDQTR SIERVVAALELDAVSIEGSDSLDDPSAVFH" /product="lipoprotein, putative" /transl_table=11 /note="identified by match to putative ortholog SPO0086 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 643557..645251 /locus_tag="Silicibacter_645" /function="COG: Predicted thiol oxidoreductase" /translation="MVISCLRSCSKSYSQTRKAILISWRPSLNCTTALAPKTTRSSTP PRWTKPSNSVPVLGAALALVLAAPLHATDRPAPAAPGLAEPHLSILPRTTHETRRVER VTAPTEDFAAPEAFEENSAGTATLPHTDDRDAFSQPPANLTFEQGLEFHLGEALFDKL WVFSPASTLASDGLGPVYNARACQRCHIRDGRGHLPEGPDYRSASTFLRISIPGPVPP HLRAIPDYIGMVPEPTYGWQLQDFSAPGVDPEYRLSVTFTEEEIALNGGEVAHLRKPQ FEASALKYGPLDSEAMLSPRVAPPMIGLGLLEAIPAADILALADPDDLDGDGISGRAN LVWSKEFDQVMLGRFGLKAGTATIHEQSAAAFSGDIGISTPLFPQPYGDCTAQQVDCR AAPHGDEDLRGTEIDQPNMDLVTFYSRNIAVPARRNLDAPEVLRGKSVFYEIGCTSCH TPKFVTHRLIDRPEQSFQLIWPYSDLLLHDMGEGLADNRPEARATGREWRTAPLWGIG LTQQVSARATFLHDGRARTLLEAILWHGGEAQAARDRVVALPPADRAALISFLESL" /product="conserved hypothetical protein" /transl_table=11 /note=", Protein of unknown function DUF1111, Protein of unknown function (DUF1111)" /note="Hypothetical protein" CDS 645251..646279 /locus_tag="Silicibacter_646" /function="COG: Predicted periplasmic lipoprotein" /translation="MPLLYRLTATACTVACTVLALSSAARADALAEAVIDQHILPTYA QLASESAEFATLAQSDCAPTSEAVRNAWGAAFDAWVAASHLRFGPSEVDNRAFAIAFW PDSRSKTPKALRSLLTNRSPVVDTPEDFATASVAVRGFYALEYLFFDPAYADLGDPDY ACAFVQAVARDLARNSAAILDDWEQDYADQLRTPAARYRSETEAHQELFKALTTGLEI LADMRIGRPLGTFDAPKPNRAEARRSGRSLRHIEIQLQSLRELALLLSANDGALTEHL TQVFDKADRHADQLSDDPSLAGITDPQKRFLLETLQQDVFEIKEIALRDLGPKLGVEA GFNALDGD" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO0089 from Silicibacter pomeroyi DSS-3" /note="Conserved hypothetical protein" CDS 646316..647416 /locus_tag="Silicibacter_647" /function="COG: Uncharacterized protein conserved in bacteria" /translation="MPSRRGFLAGLLASSVTPTATWADVGAPAYLSAGKDALGLFVMA GLSAAGEVLFRHPLPDRGHAASAHPTRPEAVAFARRPGRFADVIDCRSGAQLARLEPP EGHHFYGHGVFSPEGEVLYTTENDYARGAGVIGVWNAGDYHRIGQFSSGGIGPHEMLL RRDAPGLVVANGGIETHPESGRAKLNIPFMRPNLSYLRLSGEIQHQMELPADLHKNSI RHIAVRSDGAVGFAMQWQGDLGADVPIVGLHQPGSAPRLMAEDDPRLRNLNGYGGSIA FSGDETAIAVTSPRGGVVQVMDCTSGALQAEHALSDVCGLAPLKDGFLVSTGTGIMAQ IGTEVTTLTQAPLAWDNHLIALSSAASAPRQP" /product="conserved hypothetical protein" /transl_table=11 /note="identified by match to putative ortholog SPO0090 from Silicibacter pomeroyi DSS-3" /not