| The following 95 regions match your request. |
|---|
Matches on TM1040
|
|---|
| TM1040_1763 | translation initiation factor 3 TIGRFAM: translation initiation factor IF-3: (1.6e-46); PFAM: initiation factor 3: (3.1e-54); KEGG: sil:SPO2638 translation initiation factor IF-3, ev=3e-70, 93% identity | TM1040:1.854..1.854 Mbp (414 bp) | score=110 |
|---|
| rpoH2 | RNA polymerase factor sigma-32 binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production | TM1040:473.3..474.2 kbp (879 bp) | score=70 |
|---|
| frr | ribosome recycling factor Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs | TM1040:1.507..1.507 Mbp (564 bp) | score=70 |
|---|
| TM1040_2141 | RNA polymerase sigma factor RpoD sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria | TM1040:2.246..2.248 Mbp (1.995 kbp) | score=60 |
|---|
| TM1040_1807 | peptide chain release factor 3 TIGRFAM: peptide chain release factor 3: (2.8e-226) Small GTP-binding protein domain: (3.3e-17); PFAM: protein synthesis factor, GTP-binding: (3.7e-54) elongation factor Tu, domain 2: (2.2e-07); KEGG: sil:SPO2695 peptide chain release factor 3, ev=0.0, 91% identity | TM1040:1.898..1.899 Mbp (1.689 kbp) | score=50 |
|---|
| infA | translation initiation factor IF-1 stimulates the activities of the other two initiation factors, IF-2 and IF-3 | TM1040:3.802..3.802 Mbp (219 bp) | score=50 |
|---|
| TM1040_0066 | anti-sigma-factor antagonist TIGRFAM: anti-anti-sigma factor: (1.8e-12); PFAM: Sulfate transporter/antisigma-factor antagonist STAS: (9.8e-21); KEGG: sil:SPO3409 anti-anti-sigma factor, ev=4e-40, 78% identity | TM1040:70.54..70.89 kbp (345 bp) | score=40 |
|---|
| TM1040_1349 | transcription-repair coupling factor TIGRFAM: transcription-repair coupling factor: (0); PFAM: helicase-like: (1.8e-17) transcription factor CarD: (1.9e-42) TRCF: (1e-44) type III restriction enzyme, res subunit: (8.4e-07) DEAD/DEAH box helicase-like: (4.2e-34); KEGG: sil:SPO2074 transcription-repair coupling factor, ev=0.0, 86% identity | TM1040:1.437..1.441 Mbp (3.45 kbp) | score=40 |
|---|
| infB | translation initiation factor IF-2 Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex | TM1040:3.079..3.082 Mbp (2.508 kbp) | score=40 |
|---|
| ihfB | integration host factor subunit beta This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control | TM1040:221.1..221.4 kbp (288 bp) | score=30 |
|---|
| TM1040_0224 | translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1 | TM1040:239.2..240.3 kbp (1.098 kbp) | score=30 |
|---|
| rplL | present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors | TM1040:247..247.4 kbp (378 bp) | score=30 |
|---|
| TM1040_0415 | RNA polymerase sigma factor RpoE Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response | TM1040:425.6..426.2 kbp (597 bp) | score=30 |
|---|
| prfB | peptide chain release factor 2 recognizes the termination signals UGA and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF2; in some organisms control of PrfB protein levels is maintained through a +1 ribosomal frameshifting mechanism; this protein is similar to release factor 1 | TM1040:924.8..925.9 kbp (1.125 kbp) | score=30 |
|---|
| ihfA | integration host factor subunit alpha This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control | TM1040:975.6..975.9 kbp (303 bp) | score=30 |
|---|
| prfA | peptide chain release factor 1 recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2 | TM1040:1.004..1.005 Mbp (1.053 kbp) | score=30 |
|---|
| TM1040_0963 | anti-sigma-factor antagonist PFAM: Sulfate transporter/antisigma-factor antagonist STAS: (1e-16); KEGG: vvy:VVA0580 anti-anti-sigma regulatory factor, ev=4e-33, 26% identity | TM1040:1.031..1.032 Mbp (927 bp) | score=30 |
|---|
| TM1040_1235 | TIGRFAM: Small GTP-binding protein domain: (1.5e-22) GTP-binding protein TypA: (0); PFAM: elongation factor G-like: (1.3e-23) protein synthesis factor, GTP-binding: (1.7e-72) elongation factor Tu, domain 2: (3e-08); KEGG: sil:SPO2031 GTP-binding protein TypA, ev=0.0, 90% identity | TM1040:1.331..1.333 Mbp (1.821 kbp) | score=30 |
|---|
| TM1040_1891 | chromosome replication initiation inhibitor protein specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport | TM1040:1.992..1.993 Mbp (921 bp) | score=30 |
|---|
| TM1040_2127 | NusB antitermination factor TIGRFAM: transcription antitermination factor NusB: (4.4e-28); PFAM: NusB/RsmB/TIM44: (2.2e-22); KEGG: sil:SPO1763 transcription antitermination factor NusB, ev=2e-64, 76% identity | TM1040:2.233..2.233 Mbp (483 bp) | score=30 |
|---|
| TM1040_2177 | RNA polymerase sigma factor Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription | TM1040:2.289..2.29 Mbp (627 bp) | score=30 |
|---|
| TM1040_2723 | RNA polymerase sigma factor Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription | TM1040:2.866..2.867 Mbp (558 bp) | score=30 |
|---|
| TM1040_3064 | molybdenum cofactor biosynthesis protein B TIGRFAM: Molybdenum cofactor biosynthesis protein B, proteobacteria: (2.6e-101); PFAM: molybdopterin binding domain: (2.2e-36); KEGG: sil:SPO0291 molybdenum cofactor biosynthesis protein B, ev=3e-84, 83% identity | TM1040:3.233..3.233 Mbp (543 bp) | score=30 |
|---|
| TM1040_3225 | von Willebrand factor, type A PFAM: von Willebrand factor, type A: (2e-06); KEGG: sil:SPO2221 von Willebrand factor type A domain protein, ev=3e-84, 41% identity | TM1040:3.424..3.425 Mbp (1.434 kbp) | score=30 |
|---|
| TM1040_3784 | RNA polymerase sigma factor Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription | TM1040:4.055..4.055 Mbp (555 bp) | score=30 |
|---|
| dnaA | chromosomal replication initiation protein binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself. | TM1040:45 bp..1.457 kbp (1.413 kbp) | score=20 |
|---|
| TM1040_0065 | anti-sigma regulatory factor, serine/threonine protein kinase PFAM: ATP-binding region, ATPase-like: (0.00013); KEGG: sil:SPO3410 anti-sigma B factor, , ev=5e-37, 54% identity | TM1040:70.07..70.51 kbp (441 bp) | score=20 |
|---|
| TM1040_0140 | anti-sigma-factor antagonist PFAM: Sulfate transporter/antisigma-factor antagonist STAS: (3.6e-10); KEGG: mpa:MAP0378c hypothetical protein, ev=1e-24, 54% identity | TM1040:153.3..153.7 kbp (357 bp) | score=20 |
|---|
| TM1040_0141 | anti-sigma-factor antagonist PFAM: Sulfate transporter/antisigma-factor antagonist STAS: (3.7e-11); KEGG: nfa:nfa32110 sigma activity regulator, ev=4e-31, 40% identity | TM1040:153.7..154.6 kbp (897 bp) | score=20 |
|---|
| TM1040_0151 | ECF subfamily RNA polymerase sigma-24 factor PFAM: sigma-70 region 2: (1.8e-16) sigma-70 region 4: (1.4e-06) Sigma-70, region 4 type 2: (2.5e-15); KEGG: rpa:RPA1116 RNA polymerase ECF-type sigma factor, ev=4e-88, 55% identity | TM1040:166.2..167.1 kbp (879 bp) | score=20 |
|---|
| TM1040_0227 | KEGG: sil:SPO3516 transcription termination/antitermination factor NusG, ev=2e-85, 87% identity; TIGRFAM: transcription termination/antitermination factor NusG: (9.3e-79); PFAM: transcription antitermination protein NusG: (4.7e-41) KOW: (4.4e-09); SMART: NGN: (3.2e-36) KOW (Kyrpides, Ouzounis, Woese) motif: (2.8e-06) | TM1040:241.9..242.4 kbp (534 bp) | score=20 |
|---|
| TM1040_0241 | elongation factor G EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene | TM1040:260..262.1 kbp (2.121 kbp) | score=20 |
|---|
| TM1040_0242 | elongation factor Tu EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu | TM1040:262.2..263.4 kbp (1.176 kbp) | score=20 |
|---|
| TM1040_0416 | anti-ECF sigma factor ChrR TIGRFAM: Anti-sigma factor ChrR , : (6.8e-79); KEGG: sil:SPO1479 transcriptional activator, , ev=1e-71, 61% identity | TM1040:426.2..426.9 kbp (636 bp) | score=20 |
|---|
| TM1040_0497 | molybdenum cofactor sulfurylase PFAM: protein of unknown function DUF182: (8.2e-12); KEGG: sil:SPO0652 xanthine dehydrogenase accessory factor, ev=1e-107, 61% identity | TM1040:520.4..521.4 kbp (936 bp) | score=20 |
|---|
| TM1040_0563 | RNA polymerase factor sigma-32 binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters | TM1040:599.6..600.5 kbp (900 bp) | score=20 |
|---|
| TM1040_0612 | in Rhizobium meliloti this protein is involved in the synthesis of nodulation factors that are active on the roots of alfalfa; catalyzes formation of activated sulfate intermediate; converts ATP and sulfate to diphosphate and adenylylsulfate and then ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; the activated intermediate is transferred to the nodulation factors by NodH; may interact with NodP and NodQ; similar to the CysD and CysN proteins from Escherichia coli involved in cysteine biosynthesis | TM1040:650.5..652.2 kbp (1.719 kbp) | score=20 |
|---|
| ksgA | catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin | TM1040:1.007..1.007 Mbp (843 bp) | score=20 |
|---|
| moaC | molybdenum cofactor biosynthesis protein MoaC MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis | TM1040:1.224..1.224 Mbp (471 bp) | score=20 |
|---|
| tsf | elongation factor Ts EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu | TM1040:1.3..1.301 Mbp (876 bp) | score=20 |
|---|
| TM1040_2434 | elongation factor Tu EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu | TM1040:2.574..2.575 Mbp (1.176 kbp) | score=20 |
|---|
| TM1040_2754 | PFAM: Endoribonuclease L-PSP: (4.9e-36); KEGG: sme:SMb21139 protein, similar to translation initiation inhibitors, ev=4e-35, 56% identity | TM1040:2.903..2.903 Mbp (390 bp) | score=20 |
|---|
| TM1040_3060 | translation factor SUA5 | TM1040:3.23..3.231 Mbp (972 bp) | score=20 |
|---|
| TM1040_3632 | TIGRFAM: molybdopterin converting factor, subunit 1: (5.7e-33); PFAM: thiamineS: (2.2e-19); KEGG: rsp:RSP_1072 molybdopterin MPT converting factor, subunit 1 protein, ev=2e-33, 86% identity | TM1040:3.891..3.891 Mbp (246 bp) | score=20 |
|---|
| greA | transcription elongation factor GreA necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus | TM1040:4.007..4.008 Mbp (471 bp) | score=20 |
|---|
| TM1040_3856 | RNA polymerase ECF-subfamily sigma factor PFAM: sigma-70 region 2: (2.9e-08) Sigma-70, region 4 type 2: (7.9e-08); KEGG: sma:SAV1195 putative RNA polymerase ECF-subfamily sigma factor, ev=2e-76, 44% identity | TM1040:4.131..4.132 Mbp (1.248 kbp) | score=20 |
|---|
| rpsO | primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence | TM1040:85..85.27 kbp (270 bp) | score=10 |
|---|
| rbfA | ribosome-binding factor A | TM1040:89.2..89.6 kbp (396 bp) | score=10 |
|---|
| TM1040_0139 | anti-sigma regulatory factor, serine/threonine protein kinase | TM1040:152.9..153.3 kbp (423 bp) | score=10 |
|---|
| TM1040_0214 | Enables the recycling of peptidyl-tRNAs produced at termination of translation | TM1040:230.2..230.9 kbp (747 bp) | score=10 |
|---|
| rpoB | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme | TM1040:247.7..251.9 kbp (4.14 kbp) | score=10 |
|---|
| TM1040_0235 | DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter | TM1040:251.9..256.1 kbp (4.233 kbp) | score=10 |
|---|
| rpsC | forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation | TM1040:270.4..271.2 kbp (720 bp) | score=10 |
|---|
| rpsQ | primary binding protein; helps mediate assembly; involved in translation fidelity | TM1040:276..276.2 kbp (231 bp) | score=10 |
|---|
| rpsE | located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance | TM1040:279.4..279.9 kbp (564 bp) | score=10 |
|---|
| TM1040_0288 | recombination factor protein RarA | TM1040:294.2..295.5 kbp (1.332 kbp) | score=10 |
|---|
| TM1040_0405 | PFAM: response regulator receiver: (9.2e-27) sigma-54 factor, interaction region: (5.2e-95) helix-turn-helix, Fis-type: (1.8e-07) ATPase associated with various cellular activities, AAA_5: (0.00012); SMART: ATPase: (2.2e-10); KEGG: eba:ebA2951 sigma-54 dependent response regulator, ev=1e-116, 49% identity | TM1040:414.9..416.3 kbp (1.353 kbp) | score=10 |
|---|
| TM1040_0445 | TIGRFAM: integral membrane protein MviN: (6.6e-117); PFAM: virulence factor MVIN-like: (3e-113); KEGG: sil:SPO0396 integral membrane protein MviN, ev=0.0, 74% identity | TM1040:461..462.5 kbp (1.548 kbp) | score=10 |
|---|
| TM1040_0562 | TIGRFAM: Pca transcription factor PcaQ: (6e-133); PFAM: regulatory protein, LysR: (5.9e-20) LysR, substrate-binding: (1.1e-35); KEGG: sil:SPOA0047 pca operon transcriptional activator PcaQ, ev=4e-98, 60% identity | TM1040:598.3..599.2 kbp (939 bp) | score=10 |
|---|
| TM1040_0576 | PFAM: transcription factor CarD: (6.8e-33); KEGG: sil:SPO1420 transcriptional regulator, CarD family, ev=9e-83, 92% identity | TM1040:613.6..614.1 kbp (510 bp) | score=10 |
|---|
| TM1040_0642 | PFAM: Cobalt chelatase, CobT subunit: (3.5e-268); SMART: von Willebrand factor, type A: (2.1e-10); KEGG: sil:SPO2855 cobalt chelatase, pCobT subunit, ev=0.0, 84% identity | TM1040:686..687.9 kbp (1.878 kbp) | score=10 |
|---|
| moaA | molybdenum cofactor biosynthesis protein A | TM1040:781.4..782.4 kbp (1.008 kbp) | score=10 |
|---|
| ilvH | with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit | TM1040:931.3..931.9 kbp (561 bp) | score=10 |
|---|
| tig | trigger factor | TM1040:1.113..1.114 Mbp (1.332 kbp) | score=10 |
|---|
| TM1040_1136 | PFAM: molybdopterin binding domain: (8e-37) MoeA-like, domain I and II: (2.7e-56) MoeA-like, domain IV: (1.3e-15); KEGG: sil:SPO2153 molybdenum cofactor biosynthesis protein A, ev=1e-150, 70% identity | TM1040:1.223..1.224 Mbp (1.173 kbp) | score=10 |
|---|
| rpmA | involved in the peptidyltransferase reaction during translation | TM1040:1.292..1.292 Mbp (270 bp) | score=10 |
|---|
| TM1040_1240 | PFAM: protein of unknown function UPF0074: (1.8e-40); KEGG: sil:SPO2025 iron-sulfur cluster assembly transcription factor IscR, , ev=2e-71, 88% identity | TM1040:1.335..1.336 Mbp (459 bp) | score=10 |
|---|
| TM1040_1359 | PFAM: response regulator receiver: (1.9e-35) sigma-54 factor, interaction region: (3.8e-92) helix-turn-helix, Fis-type: (1.3e-09); SMART: ATPase: (2.4e-12); KEGG: sil:SPO2085 nitrogen assimilation regulatory protein NtrX, ev=0.0, 81% identity | TM1040:1.451..1.453 Mbp (1.419 kbp) | score=10 |
|---|
| TM1040_1361 | PFAM: response regulator receiver: (4.7e-39) sigma-54 factor, interaction region: (1.1e-40) helix-turn-helix, Fis-type: (1.6e-14); SMART: ATPase: (6.6e-08); KEGG: sil:SPO2087 nitrogen regulation protein NtrC, ev=0.0, 74% identity | TM1040:1.455..1.457 Mbp (1.38 kbp) | score=10 |
|---|
| rpsI | forms a direct contact with the tRNA during translation | TM1040:1.479..1.48 Mbp (486 bp) | score=10 |
|---|
| miaA | IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity | TM1040:1.508..1.509 Mbp (867 bp) | score=10 |
|---|
| TM1040_1461 | PFAM: response regulator receiver: (5.5e-44) sigma-54 factor, interaction region: (1.6e-28) helix-turn-helix, Fis-type: (9.6e-07) ATPase associated with various cellular activities, AAA_5: (0.00016); SMART: ATPase: (9.8e-10); KEGG: sil:SPO1892 C4-dicarboxylate transport transcriptional regulatory protein DctD, ev=0.0, 92% identity | TM1040:1.561..1.563 Mbp (1.338 kbp) | score=10 |
|---|
| TM1040_1550 | catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors | TM1040:1.657..1.658 Mbp (1.059 kbp) | score=10 |
|---|
| TM1040_1769 | von Willebrand factor A | TM1040:1.861..1.862 Mbp (1.284 kbp) | score=10 |
|---|
| TM1040_1814 | PFAM: response regulator receiver: (1.8e-31) sigma-54 factor, interaction region: (6.1e-23) helix-turn-helix, Fis-type: (1.1e-08); KEGG: sil:SPO2629 C4-dicarboxylate transport transcriptional regulatory protein, ev=1e-161, 71% identity | TM1040:1.906..1.908 Mbp (1.23 kbp) | score=10 |
|---|
| TM1040_1987 | elongation factor P | TM1040:2.092..2.092 Mbp (564 bp) | score=10 |
|---|
| rpsD | primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination | TM1040:2.212..2.212 Mbp (621 bp) | score=10 |
|---|
| gltX | Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation | TM1040:2.39..2.392 Mbp (1.326 kbp) | score=10 |
|---|
| gltX | Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation | TM1040:2.39..2.392 Mbp (1.326 kbp) | score=10 |
|---|
| TM1040_2321 | PFAM: Sulfate transporter/antisigma-factor antagonist STAS: (0.00075) Xanthine/uracil/vitamin C permease: (8.4e-05) sulphate transporter: (1.3e-68); KEGG: sil:SPO3058 sulfate transporter family protein, ev=0.0, 80% identity | TM1040:2.441..2.443 Mbp (1.611 kbp) | score=10 |
|---|
| TM1040_2467 | PFAM: molybdopterin binding domain: (3.9e-42); KEGG: sil:SPO3759 molybdenum cofactor biosynthesis domain protein, ev=1e-112, 84% identity | TM1040:2.608..2.609 Mbp (723 bp) | score=10 |
|---|
| TM1040_2468 | Regulatory factor involved in maltose metabolism | TM1040:2.609..2.609 Mbp (717 bp) | score=10 |
|---|
| smpB | binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation | TM1040:2.622..2.622 Mbp (477 bp) | score=10 |
|---|
| TM1040_2666 | PFAM: Class I peptide chain release factor: (4.9e-17); KEGG: sil:SPO0127 peptidyl-tRNA hydrolase domain protein, ev=2e-56, 77% identity | TM1040:2.802..2.802 Mbp (420 bp) | score=10 |
|---|
| TM1040_2706 | PFAM: protein of unknown function DUF182: (5.2e-12); KEGG: mlo:mlr5136 xanthine dehydrogenase accessory factor, ev=4e-64, 46% identity | TM1040:2.85..2.851 Mbp (852 bp) | score=10 |
|---|
| rho | transcription termination factor Rho | TM1040:3.031..3.033 Mbp (1.272 kbp) | score=10 |
|---|
| nusA | transcription elongation factor NusA | TM1040:3.077..3.079 Mbp (1.617 kbp) | score=10 |
|---|
| flaF | acts as an activator of flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thick flagellum | TM1040:3.139..3.139 Mbp (372 bp) | score=10 |
|---|
| rpsT | binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase | TM1040:3.2..3.2 Mbp (264 bp) | score=10 |
|---|
| TM1040_3407 | PFAM: initiator RepB protein: (0.0063); KEGG: rsp:RSP_1425 plasmid replication initiation protein, ev=1e-153, 64% identity | TM1040:3.628..3.63 Mbp (1.293 kbp) | score=10 |
|---|
| TM1040_3633 | PFAM: molybdopterin biosynthesis MoaE: (5.7e-46); KEGG: sil:SPO3633 molybdopterin converting factor, subunit 2, ev=1e-53, 72% identity | TM1040:3.891..3.891 Mbp (447 bp) | score=10 |
|---|
| TM1040_3648 | TIGRFAM: sulfate permease: (3.5e-132); PFAM: Sulfate transporter/antisigma-factor antagonist STAS: (9.4e-17) sulphate transporter: (3e-85); KEGG: sil:SPO1956 sulfate permease, ev=0.0, 66% identity | TM1040:3.904..3.906 Mbp (1.767 kbp) | score=10 |
|---|
| TM1040_3751 | is involved in the formation of active molybdenum cofactor and the chelation of molybdenum | TM1040:4.01..4.011 Mbp (1.26 kbp) | score=10 |
|---|
| mobA | in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis | TM1040:4.012..4.013 Mbp (636 bp) | score=10 |
|---|
| TM1040_3782 | PFAM: beta-Ig-H3/fasciclin: (2.9e-41); KEGG: mlo:mlr4813 similar to secreted protein MPB70 (and transforming growth factor-induced protein), ev=3e-56, 64% identity | TM1040:4.053..4.054 Mbp (552 bp) | score=10 |
|---|