Roseobase: Ruegeria pomeroyi DSS-3

Name: SPO0098
Type: gene
Description:
Source: GenBank
Position: DSS3:99759..101357 (- strand)
Length: 1599
Dbxref: GeneID:3194676
load_id: SPO0098
Parts:
Type: mRNA
Description:
Source: GenBank
Position: DSS3:99759..101357 (- strand)
Length: 1599
load_id: SPO0098.t01
parent_id: SPO0098
Parts:
Type: CDS
Description: identified by match to protein family HMM PF00005; NCBI:microcin C ABC transporter ATP-binding protein YejF; IMG:peptide/nickel transport system ATP-binding protein
Source: GenBank
Position: DSS3:99759..101357 (- strand)
Length: 1599
Dbxref: GI:56695026
  GeneID:3194676
Note: identified by match to protein family HMM PF00005
  NCBI:microcin C ABC transporter ATP-binding protein YejF
  IMG:peptide/nickel transport system ATP-binding protein
codon_start: 1
load_id: SPO0098.p01
parent_id: SPO0098.t01
product: peptide/opine/nickel uptake family ABC transporter, ATP-binding protein
protein_id: REF_tigr:SPO0098
  YP_165372.1
transl_table: 11
translation: MSLLQITDLSLSIHAYDILKRVSLTIDAGEIVAVTGESGSGKSMTALAVMQLLPGGARAS GSIRLDGQEILTLPEAEMCALRGAAVGMVFQEPMTALNPVKTIGDQVMETILIHKAMTPI RAEERAREVLTRVGLPPDRFPLSRYPHELSGGQRQRVVIAMAIALRPKLLIADEPTTALD VTTQAQILDLLKGLVQEYGMGMLMITHDLAVVADMADHITVMRHGEVVEAAPTQRLLTGM SHPYTKMLFAASDHRVTLPAPPPPAPLLEVSEVVRDYALPRTRLFAHPGHHRAVDHVSFA LNRGERLGLVGESGCGKSTLTRAILGLEPVQGGEIRLAGQPVYDGKRANPEIRRRMQVVF QDPYGSFNPRHRVDRLVTEPFHLLDAPPTGSDRSDRIAEMLTAVGLSPDDAGKYIHEFSG GQRQRIAIARALIIRPQLILFDEAVSALDVSVRAQILDLLAQLCSEYDLTYLFISHDLSV VRTITDRVLVMQSGRIVEQGETAQVFSDPAHPYTRALIAAAPRLPETGARRA
Type: exon
Description:
Source: GenBank
Position: DSS3:99759..101357 (- strand)
Length: 1599
parent_id: SPO0098.t01
> class=Sequence position=DSS3:99759..101357 (- strand)
ATGAGCCTGT TGCAGATCAC CGACCTGTCG CTGTCGATCC ATGCCTATGA CATCCTCAAG CGCGTCTCAC TGACCATCGA
CGCGGGCGAG ATCGTGGCCG TCACCGGCGA GAGCGGCTCG GGCAAGTCGA TGACGGCGCT GGCCGTGATG CAGCTGTTGC
CCGGCGGAGC GCGAGCCAGC GGCTCGATCC GGCTGGACGG ACAAGAGATT CTGACCCTGC CCGAGGCAGA AATGTGCGCC
CTGCGCGGCG CGGCGGTCGG GATGGTGTTT CAGGAACCGA TGACCGCACT GAACCCGGTC AAGACCATCG GCGATCAGGT
GATGGAAACG ATCCTGATCC ACAAAGCGAT GACGCCCATC AGGGCGGAAG AGCGCGCGCG CGAAGTGCTG ACCCGTGTCG
GCCTGCCGCC TGACCGGTTC CCGCTTTCGC GCTATCCGCA TGAACTCAGC GGCGGCCAGC GCCAGCGCGT GGTCATCGCC
ATGGCCATCG CACTGCGCCC GAAACTGCTG ATCGCGGACG AGCCGACAAC CGCGCTCGAC GTCACCACGC AGGCGCAGAT
CCTCGACCTG CTCAAGGGGC TGGTGCAGGA ATACGGCATG GGCATGCTGA TGATCACCCA TGACCTGGCC GTTGTTGCCG
ACATGGCCGA CCATATCACC GTCATGCGCC ATGGCGAGGT GGTCGAGGCC GCCCCGACCC AGCGCCTGCT GACCGGTATG
AGTCATCCCT ATACGAAGAT GCTGTTCGCC GCCTCGGATC ACCGCGTGAC CCTGCCCGCG CCACCGCCAC CGGCACCGCT
GCTGGAGGTG TCGGAGGTGG TGCGCGACTA TGCCCTGCCG CGCACCCGGC TGTTTGCGCA CCCGGGGCAT CACCGCGCCG
TGGATCATGT CAGCTTTGCC CTGAACCGGG GCGAGCGGCT GGGGCTGGTC GGCGAATCCG GCTGTGGCAA ATCCACCCTG
ACACGCGCCA TCCTGGGGCT GGAGCCGGTA CAGGGCGGCG AAATCCGTCT GGCGGGGCAA CCGGTCTATG ACGGCAAACG
CGCCAATCCC GAAATCCGCC GCCGCATGCA GGTGGTGTTT CAGGATCCTT ACGGCAGCTT CAACCCGCGC CACCGTGTCG
ACCGGCTGGT GACCGAACCG TTTCATCTGC TCGATGCGCC GCCAACCGGG TCGGACCGCA GCGACCGCAT TGCCGAGATG
CTGACCGCCG TCGGCCTGTC GCCCGACGAT GCGGGAAAGT ATATCCACGA GTTTTCCGGC GGTCAGCGCC AGCGCATCGC
CATTGCCCGT GCGCTGATCA TCCGGCCTCA GCTGATCCTG TTCGACGAGG CGGTCTCGGC GCTTGATGTC TCGGTCCGGG
CGCAGATCCT TGACCTGCTG GCGCAGCTCT GCTCCGAATA TGACCTGACC TATCTGTTCA TCAGCCATGA TCTGAGCGTG
GTGCGCACGA TCACCGACCG GGTGCTGGTG ATGCAATCGG GCCGCATTGT CGAACAGGGC GAGACCGCAC AGGTCTTCTC
GGACCCCGCG CATCCCTATA CCCGGGCCCT GATCGCCGCC GCGCCGCGTC TGCCCGAAAC CGGGGCGCGG CGGGCATGA
>SPO0098 class=Sequence position=DSS3:99759..101357 (- strand)
ATGAGCCTGT TGCAGATCAC CGACCTGTCG CTGTCGATCC ATGCCTATGA CATCCTCAAG CGCGTCTCAC TGACCATCGA
CGCGGGCGAG ATCGTGGCCG TCACCGGCGA GAGCGGCTCG GGCAAGTCGA TGACGGCGCT GGCCGTGATG CAGCTGTTGC
CCGGCGGAGC GCGAGCCAGC GGCTCGATCC GGCTGGACGG ACAAGAGATT CTGACCCTGC CCGAGGCAGA AATGTGCGCC
CTGCGCGGCG CGGCGGTCGG GATGGTGTTT CAGGAACCGA TGACCGCACT GAACCCGGTC AAGACCATCG GCGATCAGGT
GATGGAAACG ATCCTGATCC ACAAAGCGAT GACGCCCATC AGGGCGGAAG AGCGCGCGCG CGAAGTGCTG ACCCGTGTCG
GCCTGCCGCC TGACCGGTTC CCGCTTTCGC GCTATCCGCA TGAACTCAGC GGCGGCCAGC GCCAGCGCGT GGTCATCGCC
ATGGCCATCG CACTGCGCCC GAAACTGCTG ATCGCGGACG AGCCGACAAC CGCGCTCGAC GTCACCACGC AGGCGCAGAT
CCTCGACCTG CTCAAGGGGC TGGTGCAGGA ATACGGCATG GGCATGCTGA TGATCACCCA TGACCTGGCC GTTGTTGCCG
ACATGGCCGA CCATATCACC GTCATGCGCC ATGGCGAGGT GGTCGAGGCC GCCCCGACCC AGCGCCTGCT GACCGGTATG
AGTCATCCCT ATACGAAGAT GCTGTTCGCC GCCTCGGATC ACCGCGTGAC CCTGCCCGCG CCACCGCCAC CGGCACCGCT
GCTGGAGGTG TCGGAGGTGG TGCGCGACTA TGCCCTGCCG CGCACCCGGC TGTTTGCGCA CCCGGGGCAT CACCGCGCCG
TGGATCATGT CAGCTTTGCC CTGAACCGGG GCGAGCGGCT GGGGCTGGTC GGCGAATCCG GCTGTGGCAA ATCCACCCTG
ACACGCGCCA TCCTGGGGCT GGAGCCGGTA CAGGGCGGCG AAATCCGTCT GGCGGGGCAA CCGGTCTATG ACGGCAAACG
CGCCAATCCC GAAATCCGCC GCCGCATGCA GGTGGTGTTT CAGGATCCTT ACGGCAGCTT CAACCCGCGC CACCGTGTCG
ACCGGCTGGT GACCGAACCG TTTCATCTGC TCGATGCGCC GCCAACCGGG TCGGACCGCA GCGACCGCAT TGCCGAGATG
CTGACCGCCG TCGGCCTGTC GCCCGACGAT GCGGGAAAGT ATATCCACGA GTTTTCCGGC GGTCAGCGCC AGCGCATCGC
CATTGCCCGT GCGCTGATCA TCCGGCCTCA GCTGATCCTG TTCGACGAGG CGGTCTCGGC GCTTGATGTC TCGGTCCGGG
CGCAGATCCT TGACCTGCTG GCGCAGCTCT GCTCCGAATA TGACCTGACC TATCTGTTCA TCAGCCATGA TCTGAGCGTG
GTGCGCACGA TCACCGACCG GGTGCTGGTG ATGCAATCGG GCCGCATTGT CGAACAGGGC GAGACCGCAC AGGTCTTCTC
GGACCCCGCG CATCCCTATA CCCGGGCCCT GATCGCCGCC GCGCCGCGTC TGCCCGAAAC CGGGGCGCGG CGGGCATGA

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