Exact Sequence and Pattern Search
Source Sequence Type:
DNA
RNA
Protein
Target Sequence/Pattern:
Target Sequence/Pattern Examples:
1. ATCGAT -- exact match
2. ATCNNNNNNGAT -- There can be 6 mismatches between 'ATC' and 'GAT'
3. ATC[4:6]GAT -- [4:6] means there may be 4, 5 or 6 mismatches between 'ATC' and 'GAT'
more examples...
Mismatch Parameters:
Maximum Mismatches per Segment:
Maximum Total Mismatches:
Source Sequence : (
from database
input
)
If '
from database
', please select from genome database:
-- Roseobacter na
-- Roseobacter aa
-- Roseobacter na whole genome
Individual bacterials:
-- Citreicella sp. SE45 na
-- Citreicella sp. SE45 aa
-- Citreicella sp. SE45 na whole genome
-- Citreicella sp. 357 na
-- Citreicella sp. 357 aa
-- Citreicella sp. 357 na whole genome
-- Dinoroseobacter shibae DFL 12 na
-- Dinoroseobacter shibae DFL 12 aa
-- Dinoroseobacter shibae DFL 12 na whole genome
-- Jannaschia sp. CSS1 na
-- Jannaschia sp. CSS1 aa
-- Jannaschia sp. CSS1 na whole genome
-- Loktanella vestfoldensis SKA53 na
-- Loktanella vestfoldensis SKA53 aa
-- Loktanella vestfoldensis SKA53 na whole genome
-- Loktanella sp. SE62 na
-- Loktanella sp. SE62 aa
-- Loktanella sp. SE62 na whole genome
-- Maritimibacter alkaliphilus HTCC2654 na
-- Maritimibacter alkaliphilus HTCC2654 aa
-- Maritimibacter alkaliphilus HTCC2654 na whole genome
-- Oceanicola sp. S124 na
-- Oceanicola sp. S124 aa
-- Oceanicola sp. S124 na whole genome
-- Oceanibulbus indolifex HEL-45 na
-- Oceanibulbus indolifex HEL-45 aa
-- Oceanibulbus indolifex HEL-45 na whole genome
-- Oceanicola batsensis HTCC2597 na
-- Oceanicola batsensis HTCC2597 aa
-- Oceanicola batsensis HTCC2597 na whole genome
-- Oceanicola granulosus HTCC2516 na
-- Oceanicola granulosus HTCC2516 aa
-- Oceanicola granulosus HTCC2516 na whole genome
-- Octadecabacter antarcticus str. 238 na
-- Octadecabacter antarcticus str. 238 aa
-- Octadecabacter antarcticus str. 238 na whole genome
-- Octadecabacter antarcticus str. 307 na
-- Octadecabacter antarcticus str. 307 aa
-- Octadecabacter antarcticus str. 307 na whole genome
-- Pelagibaca bermudensis HTCC2601 na
-- Pelagibaca bermudensis HTCC2601 aa
-- Pelagibaca bermudensis HTCC2601 na whole genome
-- Phaeobacter gallaeciensis DSM 17395 na
-- Phaeobacter gallaeciensis DSM 17395 aa
-- Phaeobacter gallaeciensis DSM 17395 na whole genome
-- Phaeobacter gallaeciensis 2.10 na
-- Phaeobacter gallaeciensis 2.10 aa
-- Phaeobacter gallaeciensis 2.10 na whole genome
-- Phaeobacter gallaeciensis ANG1 na
-- Phaeobacter gallaeciensis ANG1 aa
-- Phaeobacter gallaeciensis ANGA1 na whole genome
-- Phaeobacter sp. Y4I na
-- Phaeobacter sp. Y4I aa
-- Phaeobacter sp. Y4I na whole genome
-- Rhodobacteraceae bacterium KLH11 na
-- Rhodobacteraceae bacterium KLH11 aa
-- Rhodobacteraceae bacterium KLH11 na whole genome
-- Rhodobacterales bacterium HTCC2083 na
-- Rhodobacterales bacterium HTCC2083 aa
-- Rhodobacterales bacterium HTCC2083 na whole genome
-- Rhodobacterales bacterium HTCC2150 na
-- Rhodobacterales bacterium HTCC2150 aa
-- Rhodobacterales bacterium HTCC2150 na whole genome
-- Rhodobacterales bacterium HTCC2255 na
-- Rhodobacterales bacterium HTCC2255 aa
-- Rhodobacterales bacterium HTCC2255 na whole genome
-- Rhodobacterales bacterium HTCC2255 (Metagenome) na
-- Rhodobacterales bacterium HTCC2255 (Metagenome) aa
-- Rhodobacterales bacterium HTCC2255 (Metagenome) na whole genome
-- Roseobacter denitrificans OCh 114 na
-- Roseobacter denitrificans OCh 114 aa
-- Roseobacter denitrificans OCh 114 na whole genome
-- Roseobacter litoralis Och 149 na
-- Roseobacter litoralis Och 149 aa
-- Roseobacter litoralis Och 149 na whole genome
-- Roseobacter sp. AzwK-3b na
-- Roseobacter sp. AzwK-3b aa
-- Roseobacter sp. AzwK-3b na whole genome
-- Roseobacter sp. CCS2 na
-- Roseobacter sp. CCS2 aa
-- Roseobacter sp. CCS2 na whole genome
-- Roseobacter sp. GAI101 na
-- Roseobacter sp. GAI101 aa
-- Roseobacter sp. GAI101 na whole genome
-- Roseobacter sp. MED193 na
-- Roseobacter sp. MED193 aa
-- Roseobacter sp. MED193 na whole genome
-- Roseobacter SK209-2-6 na
-- Roseobacter SK209-2-6 aa
-- Roseobacter SK209-2-6 na whole genome
-- Roseobacter sp. R2A57 na
-- Roseobacter sp. R2A57 aa
-- Roseobacter sp. R2A57 na whole genome
-- Roseovarius nubinhibens ISM na
-- Roseovarius nubinhibens ISM aa
-- Roseovarius nubinhibens ISM na whole genome
-- Roseovarius sp. TM1035 na
-- Roseovarius sp. TM1035 aa
-- Roseovarius sp. TM1035 na whole genome
-- Roseovarius sp. 217 na
-- Roseovarius sp. 217 aa
-- Roseovarius sp. 217 na whole genome
-- Ruegeria pomeroyi DSS-3 na
-- Ruegeria pomeroyi DSS-3 aa
-- Ruegeria pomeroyi DSS-3 na whole genome
-- Ruegeria sp. R11 na
-- Ruegeria sp. R11 aa
-- Ruegeria sp. R11 na whole genome
-- Ruegeria sp. TM1040 na
-- Ruegeria sp. TM1040 aa
-- Ruegeria sp. TM1040 na whole genome
-- Ruegeria sp. TrichCH4B na
-- Ruegeria sp. TrichCH4B aa
-- Ruegeria sp. TrichCH4B na whole genome
-- Ruegeria sp. TW15 na
-- Ruegeria sp. TW15 aa
-- Ruegeria sp. TW15 na whole genome
-- Ruegeria lacuscaerulensis ITI-1157 na
-- Ruegeria lacuscaerulensis ITI-1157 aa
-- Ruegeria lacuscaerulensis ITI-1157 na whole genome
-- Sagittula stellata E-37 na
-- Sagittula stellata E-37 aa
-- Sagittula stellata E-37 na whole genome
-- Sulfitobacter sp. EE36 na
-- Sulfitobacter sp. EE36 aa
-- Sulfitobacter sp. EE36 na whole genome
-- Sulfitobacter sp. NAS 14.1 na
-- Sulfitobacter sp. NAS 14.1 aa
-- Sulfitobacter sp. NAS 14.1 na whole genome
-- Thalassiobium sp. R2A62 na
-- Thalassiobium sp. R2A62 aa
-- Thalassiobium sp. R2A62 na whole genome
-- Phaeobacter caeruleus 13 na
-- Phaeobacter caeruleus 13 aa
-- Phaeobacter caeruleus 13 na whole genome
-- Wenxinia marina DSM 24838 na
-- Wenxinia marina DSM 24838 aa
-- Wenxinia marina DSM 24838 na whole genome
-- Phaeobacter inhibens T5 na
-- Phaeobacter inhibens T5 aa
-- Phaeobacter inhibens T5 na whole genome
-- Loktanella hongkongensis DSM 17492 na
-- Loktanella hongkongensis DSM 17492 aa
-- Loktanella hongkongensis DSM 17492 na whole genome
-- Leisingera nanhaiensis NH52F na
-- Leisingera nanhaiensis NH52F aa
-- Leisingera nanhaiensis NH52F na whole genome
-- Leisingera aquimarina DSM 24565 na
-- Leisingera aquimarina DSM 24565 aa
-- Leisingera aquimarina DSM 24565 na whole genome
-- Phaeobacter daeponensis TF-218 na
-- Phaeobacter daeponensis TF-218 aa
-- Phaeobacter daeponensis TF-218 na whole genome
-- Phaeobacter arcticus DSM 23566 na
-- Phaeobacter arcticus DSM 23566 aa
-- Phaeobacter arcticus DSM 23566 na whole genome
-- Loktanella vestfoldensis DSM 16212 na
-- Loktanella vestfoldensis DSM 16212 aa
-- Loktanella vestfoldensis DSM 16212 na whole genome
-- Roseobacter sp. LE17 na
-- Roseobacter sp. LE17 aa
-- Roseobacter sp. LE17 na whole genome
-- Oceaniovalibus guishaninsula JLT2003 na
-- Oceaniovalibus guishaninsula JLT2003 aa
-- Oceaniovalibus guishaninsula JLT2003 na whole genome
-- Ruegeria mobilis F1926 na
-- Ruegeria mobilis F1926 aa
-- Ruegeria mobilis F1926 na whole genome
-- Thalassobacter arenae DSM 19593 na
-- Thalassobacter arenae DSM 19593 aa
-- Thalassobacter arenae DSM 19593 na whole genome
-- Celeribacter baekdonensis B30 na
-- Celeribacter baekdonensis B30 aa
-- Celeribacter baekdonensis B30 na whole genome
If '
input
', please input the sequence in FASTA format:
Output Alignment:
Please specify the number of bases before and after the match range:
(chars)