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Ruegeria pomeroyi DSS-3

Ecology and Physiology

A Model Heterotrophic Marine Bacterium

Ruegeria pomeroyi DSS-3 is an α-proteobacterium in the roseobacter clade isolated in 1998 from coastal Georgia seawater by enriching for growth on the organic sulfur compound DMSP (dimethylsulfoniopropionate).

The roseobacter clade is one of about 10 major taxa of marine bacteria that dominate bacterioplankton communities in coastal and open oceans. Unlike most of the major marine groups, R. pomeroyi and its roseobacter relatives are readily cultured from seawater (González and Moran 1997, González et al. 2000, Buchan et al. 2001). R. pomeroyi is serving as a model organism for studies of the biogeochemical, ecological, and physiological strategies of heterotrophic marine bacteria.

For NCBI Genome Page, click here.

General features of the Ruegeria pomeroyi genome
Feature
Total number of coding sequences 4,252
Number of rRNA operons (16S, 23S, 5S) 3
Number of tRNA genes 53
Number of structural RNA genes 2
Proteins similar to proteins of known function and role (% of total proteins) 59.7
Proteins of unknown function (% of total proteins) 16.8
Conserved hypothetical proteins (% of total proteins) 15.3
Hypothetical proteins (% of total proteins) 8.2
  Main chromosome Megaplasmid
Molecule length (bp) 4,109,442 491,611
G+C content (%) 64.2 62.8
Number of coding sequences 3,838 445
Average size of coding sequences (bp) 966 997
Percentage of coding sequence 90.2 90.3
Sequencing status Completed

J. Craig Venter Institute    University of South Alabama

Roseobacter Genomes
 
 
 
* Genomes available in GBrowse

Completed Genomes

Dinoroseobacter shibae DFL 12 Roseobacter denitrificans OCh 114
Jannaschia sp. CCS1 Ruegeria pomeroyi DSS-3
Phaeobacter gallaeciensis 2.10 Ruegeria sp. TM1040
Phaeobacter gallaeciensis DSM17395 (BS107)  

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Roseobase/images maybe used for research, educational projects andpresentations. A photocredit is required when using Roseobase/images in presentations and educational publications.

For other usage please contact Dr. Kunkel at:
Dennis Kunkel Microscopy, Inc.
P.O. Box 2008 Kailua, HI 96734

Phone: 808-263-0583
Email: kunkel@denniskunkel.com

 
University of Georgia
Marine Sciences
Athens, GA 30602